mRNA_H-paniculata_contig12963.1856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12963.1856.1
Unique NamemRNA_H-paniculata_contig12963.1856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12963.1856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12963contigH-paniculata_contig12963:378..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.4136312-CDS-H-paniculata_contig12963:377..5031622929022.4136312-CDS-H-paniculata_contig12963:377..503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12963 378..503 +
1691480702.932956-CDS-H-paniculata_contig12963:377..5031691480702.932956-CDS-H-paniculata_contig12963:377..503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12963 378..503 +
1622929022.433192-CDS-H-paniculata_contig12963:1985..20391622929022.433192-CDS-H-paniculata_contig12963:1985..2039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12963 1986..2039 +
1691480702.9428678-CDS-H-paniculata_contig12963:1985..20391691480702.9428678-CDS-H-paniculata_contig12963:1985..2039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12963 1986..2039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12963.1856.1prot_H-paniculata_contig12963.1856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12963 378..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12963.1856.1

>prot_H-paniculata_contig12963.1856.1 ID=prot_H-paniculata_contig12963.1856.1|Name=mRNA_H-paniculata_contig12963.1856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
IKRRQRRVQAQVAAYRMEREREENRRREIERMIAREERRHSQTDIEARVR
QDVEKARRRR
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mRNA from alignment at H-paniculata_contig12963:378..2040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12963.1856.1 ID=mRNA_H-paniculata_contig12963.1856.1|Name=mRNA_H-paniculata_contig12963.1856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1663bp|location=Sequence derived from alignment at H-paniculata_contig12963:378..2040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAAGAGACGACAGCGGAGGGTTCAAGCGCAAGTGGCGGCCTATCGTAT
GGAAAGGGAGAGAGAAGAAAATAGAAGACGTGAGATTGAACGGATGATTG
CCAGGGAGGAACGACGACACTCTCAGGCAAGCATGTGCCTATAATAGTAA
TATCAAAAGGACTGTGGACAAGAATTGCGGAGACTGTACGTCTCAGGGCT
CATCATAGAGAAATACGTGCTTCGCTATGATGCTTCATTGCGTTGCTTAA
CTGTTATACGACATACCAACGTCTACCATGTTCCCTTTTTACGTAAGAGT
TACACATCGAAGTACCCGCAGAAAGGAGGTACGTACCAGATTTGGTGTGG
CAAGGAGATAGGCAGTGGCTTCAGCGTGGTAGCAATGTAATAGAATTTGC
GTGGCAGGGACCACAACATGGCGGTTCGTGGCGGGACGTCAATAGTTACC
CCGGTATGGCAAAAAGGAACCAACTGGCAGTCACATACCAGAGACGTACA
TTTTGGAATTCTTGTCGTAGTGACAGGCGAATGAACGTTCGCACGGCAGA
GGTACATGTGAGCAACAGAGTGCTAGGAGGTATTGGCGTGCTAGGGAGGT
GCGAACTAGGATTCGTGTGACAGGGAGATACAAATGGGTCATCACGTGGC
AAGGAGGTCTAAAGACGTTGTTGCGTCGCAGCTGGTCAGAAACGATTTGG
CCGGGAGACGGAAATTAACGTCGTGTAGCAAGAAGACACGAATGAAAATT
CACGTGTGAGGGACGTACCGATTTACAATTGCGCGTTATCGGGAGGTGGG
CACCCATTAGCATTTGCGTGGCACGGGGGTACAAATGGAGCCTGGTGTGC
TAGGGAGGCAGAGAGATATACATTTGCGTGACAGGCGGGTACGAAGAGCC
AATCGCGTTGGAGGAAGGTGTACATTCACATTCGCGTGGTGGGGATAAAC
GATGCACGTTCACGTGGCAGGGAGCTACATGTTGGCAATTGGGTGCCGGC
GAGGTACAAATTAGTATTCGTCTGCTAGAGAGGTACTAAGGGGCACTCCT
TGGTAGCATTTGCTCGGCAAGAAGGCACGCAGTAGTTTTTGCCTGAGGGC
AGGTGCAGATTGGCAACCGCGTGGTGAGGAGATAGCAACGACGGTGTACA
TTGCAGGCAAGTGCGAATCGGCAATCGCGTTGCAGGAGATCACAACTATG
CCAATTCGTCCCGGGGGGGATGAACTTGGCATTTATTGCAGAGACATATG
CATTCATATTTGCGTGGTAAAGGAGTACAAGTGATCGTTCGAGTGGGAGG
GAGGTGCCAAATATGCCAACACATGTTTGAGGTAGCTGGGGGAGGGGCGT
ACTCATGTTTTGCATGCCATGGTTGTTTGGTCGTTGACAATGCGTCCTCA
AGTCAACGGAGTATGGCAGAGGGCGTACAACTCAACACCCGCGTGGTAAG
GCGTTACAAGTTCGCGTCAAAAGAACCCGTAGACCTCGTGCGTGCAGCAT
TACCCAGATATGCACGTCACTACAACGCCAAAACTTAGTGTACGCGCATT
TTGCCTAACAATATTTTCTTCTCTGAGTTACCTGGCTGCCTCACTCCGCG
CTCGACAGACGGATATAGAAGCGCGCGTGAGGCAAGACGTTGAAAAGGCA
CGACGACGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12963:378..2040+

>mRNA_H-paniculata_contig12963.1856.1 ID=mRNA_H-paniculata_contig12963.1856.1|Name=mRNA_H-paniculata_contig12963.1856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig12963:378..2040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAAGAGACGACAGCGGAGGGTTCAAGCGCAAGTGGCGGCCTATCGTAT
GGAAAGGGAGAGAGAAGAAAATAGAAGACGTGAGATTGAACGGATGATTG
CCAGGGAGGAACGACGACACTCTCAGATAAAGAGACGACAGCGGAGGGTT
CAAGCGCAAGTGGCGGCCTATCGTATGGAAAGGGAGAGAGAAGAAAATAG
AAGACGTGAGATTGAACGGATGATTGCCAGGGAGGAACGACGACACTCTC
AGACGGATATAGAAGCGCGCGTGAGGCAAGACGTTGAAAAGGCACGACGA
CGGCGGACGGATATAGAAGCGCGCGTGAGGCAAGACGTTGAAAAGGCACG
ACGACGGCGG
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