mRNA_H-paniculata_contig12867.1796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12867.1796.1
Unique NamemRNA_H-paniculata_contig12867.1796.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12867.1796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12867contigH-paniculata_contig12867:2465..6135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size659
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12867.1796.1prot_H-paniculata_contig12867.1796.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12867 2465..6135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.6389124-CDS-H-paniculata_contig12867:2464..26291622929012.6389124-CDS-H-paniculata_contig12867:2464..2629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12867 2465..2629 +
1691480698.8721197-CDS-H-paniculata_contig12867:2464..26291691480698.8721197-CDS-H-paniculata_contig12867:2464..2629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12867 2465..2629 +
1622929012.6555996-CDS-H-paniculata_contig12867:3659..38661622929012.6555996-CDS-H-paniculata_contig12867:3659..3866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12867 3660..3866 +
1691480698.887486-CDS-H-paniculata_contig12867:3659..38661691480698.887486-CDS-H-paniculata_contig12867:3659..3866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12867 3660..3866 +
1622929012.6758606-CDS-H-paniculata_contig12867:5850..61351622929012.6758606-CDS-H-paniculata_contig12867:5850..6135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12867 5851..6135 +
1691480698.8976972-CDS-H-paniculata_contig12867:5850..61351691480698.8976972-CDS-H-paniculata_contig12867:5850..6135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12867 5851..6135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12867.1796.1

>prot_H-paniculata_contig12867.1796.1 ID=prot_H-paniculata_contig12867.1796.1|Name=mRNA_H-paniculata_contig12867.1796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
EGEEGVAATTAAATVCVDEGAVSTNHRRPAPMHHHRLFGLAAIIAARSED
SPEKESPTFGAETDHTSTASRAIEELRPPSATSPVADGSFWPFSSTVPFD
GLRKGSAGAGGGESVESMSLLKQQSIERPKDTSTVVDGIAGRPLAGAPPS
GVGGGFGVGELLRVLRTTDSPSPATPRDSPLPPNGSLRDSAVTAVVEAAA
AATKVGGGESGKQRLGWGM
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mRNA from alignment at H-paniculata_contig12867:2465..6135+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12867.1796.1 ID=mRNA_H-paniculata_contig12867.1796.1|Name=mRNA_H-paniculata_contig12867.1796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3671bp|location=Sequence derived from alignment at H-paniculata_contig12867:2465..6135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGTGAAGAGGGCGTAGCGGCGACGACGGCGGCGGCGACGGTCTGTGT
AGATGAAGGTGCGGTGTCTACAAACCACCGGCGGCCTGCCCCGATGCATC
ATCATCGCCTGTTCGGGCTCGCTGCGATCATCGCCGCTCGTTCTGAAGAC
TCTCCCGAAAAAGAGGCAAGCACGTAGCAAAAGAAGCGTTGTTGTTATTG
TGTTTTTGCGATTTTTTTGTTGTAGTTTGAATGTATGTACGTGCTCCGTG
CTAACATCAGGTGTTTGTTTGGTTGGTGGATAGTCGATAGTTGTGCCTGG
TAGTAGTAATGACAGCAAGAAGAGTCTTGACGAAGGCTGGATTGATTTCC
GTTACACGGCGAAACCGACATGAGCAACCTACCACCTCTTTCTTTCCATG
TGAGCGGGGCCGTTGTCGCCCGTATCCCGCAACGAATTCGGCAGCAGACC
TTCGCAGGGTCGAGTGTGTTGTTGAATTGTTGAGGTAGTATTTACCCACG
GCACGATGTTGGAGTATCTTTTTAAATTCCGGTTTGCCGATTTGTCTAGT
ATAACAAACAATTTTACAAGTATTATCTTAAAGGCTAGGACACCTGGGAG
GCCTGTGTAGAGTAGAGTAGAGCTAACGCATGTGCAAAAATCACACCTCA
ATGAACCCCACATTATTGAGTTTCATATGCTCGTGATTATATAAAGCTGA
TTTTTGAGGTCAGCTGTATTACCTGAACAAGGGTATAATGGAGCTTCATA
GTTGTACTGTAGTTGAACTGACTGTGGCAGGTTTAATTTGTTGATGGGAA
TTCGGTCTGTGAAATGAAGTGCTGTTTTTTATTTCTATGGTGCCAGTTGC
TCATGTGGAGACAACCCCCCCCCCCCCCACCCCTCCCCTCCCCTCCCCCC
ACACATATTCACACATCAGTTTGAAAGAGTGATGAAAGCTTTTGGTTGAT
GGGTGAATGTTATCTGGAGGTACATTGCATGGAAAACTCTTTAAGTTGTT
GTTAGGGTGGAACGTGGAGTTGCGAGCTATCTAATCTGTAACTAGTGTAT
AGTTGTGAAGTACCCCCATTCGATTTGATTTTGCTGATGAATGTGCACAT
CTGATTTTTTTAGGTCAGCTGCATAAGTTCAAAAGTTAGGTACACCCTCC
CCTTCTCTCTCTCCACCATTTCGGCCGCGCCCTCACCGTCCCCAGTCTCC
AACATTTGGCGCCGAGACCGACCATACCTCGACTGCTTCTCGAGCAATAG
AAGAACTCAGACCCCCTAGTGCAACATCTCCGGTCGCGGATGGCTCCTTC
TGGCCTTTCTCGTCTACCGTGCCGTTCGATGGACTGCGTAAGGGTAGCGC
GGGCGCAGGCGGGGGGGAGAGTGTGGAATCTATGTCGTTGCTGAAGCAGC
AGGTATTCTTCATATAATCGAAGGAGCGGGTCGTATCTACGGAGACGTGG
AGGACTAACCCTCTTTTCACAGCTCATCGTTTTCACTTGTAAAGCCTCAG
ATGGTCTCTCTCTCTTTTTTATTTTGCGATTACTTCATTTTTTTATTTTT
TTTCTAAATGGTATCCTTTTGCGTTCGCCGCTTGCCTGTACAAAAAAAAA
GGACAAGGGTGGCATAATGGAAATGTCGAAAATTTCAGTAAATGAGAAAA
TCTGTTTCTCTTACTCGGCGTAGTGCTTCTCTACGTACGTCCTTTTCACC
CCCCCCCAGTTCATCATTTATTTGTCATCAGGATCGATCAGGATGATTGA
TTTAAATGTAATTCGCAGATATCGAGCTTGTACAAGCAGATCTCAGTAAA
TCCTGTCAGATTTCATCATCGTCACGTTTCGTAGAGCTAATGTACAAAAT
AAAGTGTCACAAATCCATAGATTGACTTGAAGACAGGGACAACACAAAGA
TAGCAACGTCGTGCATTTGATGATATTACGAGTCGTAGTTCCCGAGAAAA
CCGGAGGTGACCCCCCATCCGTGTCCTGATGTGCCATACTTGTGCCAAAC
ACCAGGACAGAGGTGCGCTTTTCGACTTGCTTTTGCAGAATTTTACGAGT
TGGAAGCTGAGATTTCGCCAAGTATCGTAAATAGCAATGCAAATAAGCGT
ACACATTTCCCTTTTCGATATCGGTCGTACTTACAAAAAAAAAACAAAAA
ACTATGTTTACGCTTTCTGGTCATACTCCAAAATCCGTTTTGAGTTTTTT
AGCTTGTTTTAGCTGAACTTTTATGAACTATGAACTGAAAATTTCCACAG
ATGTTGTAGGTAGCAATACGATTTTTTTTCACTGGCCTCTTTTCGATATC
GGTCGCAGTCCTCTAAAAATCCGCCGAATACGAGCTCTGGAGTATGATTT
ATTTGGGGACAATATCCGTTTTTACCGGATTTATCGACAATCACGATCGA
TGTTAAAAAGGTGGCGAGTGTTTAGTTTTTCGTCCTGTCATTTGCAACAT
CTTTGCAGAGGTTGAGCTTCCAATTCGTAAATTTTAGCTGCAGAAATCGT
ACTGTTCAAGTTTTTTCAATATCCAGCCTACAAATGACAGTTGCGTAAGT
GGAGGTCATGTAAAGTTTGAGCTGATTTTCACGAATTAGAAGCTGAAAAA
AATGCGGAAACATTGTAAATTGCGACCCGAAAACATGCTTTCGTTCATTG
TGGGTGTCATACTCCAGAATCCGATTTTTTTACGTTTTTTTGCCTTTTTA
GCTCAGTTTTCTAATTGAACGCTGAACTTCTTCTGGGATGCTGCAATTGG
CAATTTAAAGAAAGTTACACTTGCCCCATTCCGATCGGTATCGCCAAAAG
TTTAGCCCTCGAGTATGACTTATTTTTGCCTGGAATCGGTTTTTCCCGGA
TGTCTGGACAACCACACTCGGTATCAAGAATTGACAAACTACTTTTTTTT
GTATTGCTAATTACATACAACATCTATTGAAATTTTCAGTCTCTTCACAC
ACAAAACTCAGCTCAAAATGCTTGACGAAATCTCACAAATCTTGAAGAGA
GACCAGCTTGTATAACGGACTTTAATGGGCCCTTGACCGATAAAATTCAA
GTCAATCCCCGCCTCCCCCTTCCGAAATATATTTACTCACACGTTTTTTT
AATGTATAACATGAACGCCACCATCGAATTAAACGTCTGATAAACCTGCA
CAGGTGAACGTAGTGCCTCTCCAGTGGTACGCATGTCCACCTGTTAGACG
TCAAAATATAGGCCATGGATAAAATACAAAACACTGAAATATACCTTTGA
CATATATATATATATATATATATATATATTTAAACTCTCTAAGAAAACCT
GGGGGGGTTTTGCCTCGTGTGAAAATCTCTTTTTTTTCGTCTGTCCGTCG
CCTCGTCCCCACCTCCAAAACTCAAACCCCAAACAGAGCATTGAACGCCC
GAAAGACACCAGCACTGTCGTGGACGGGATTGCAGGCCGACCGTTAGCAG
GAGCGCCACCGTCAGGCGTCGGGGGCGGGTTCGGGGTTGGAGAACTTTTG
CGAGTGCTGAGGACAACCGACTCCCCCTCTCCGGCGACGCCCAGGGACTC
CCCACTTCCTCCCAACGGATCTCTAAGGGATTCAGCAGTGACGGCGGTGG
TGGAGGCGGCGGCGGCAGCGACTAAGGTTGGTGGGGGAGAAAGCGGGAAG
CAGCGGCTGGGATGGGGCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig12867:2465..6135+

>mRNA_H-paniculata_contig12867.1796.1 ID=mRNA_H-paniculata_contig12867.1796.1|Name=mRNA_H-paniculata_contig12867.1796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig12867:2465..6135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGTGAAGAGGGCGTAGCGGCGACGACGGCGGCGGCGACGGTCTGTGT
AGATGAAGGTGCGGTGTCTACAAACCACCGGCGGCCTGCCCCGATGCATC
ATCATCGCCTGTTCGGGCTCGCTGCGATCATCGCCGCTCGTTCTGAAGAC
TCTCCCGAAAAAGAGGAGGGTGAAGAGGGCGTAGCGGCGACGACGGCGGC
GGCGACGGTCTGTGTAGATGAAGGTGCGGTGTCTACAAACCACCGGCGGC
CTGCCCCGATGCATCATCATCGCCTGTTCGGGCTCGCTGCGATCATCGCC
GCTCGTTCTGAAGACTCTCCCGAAAAAGAGTCTCCAACATTTGGCGCCGA
GACCGACCATACCTCGACTGCTTCTCGAGCAATAGAAGAACTCAGACCCC
CTAGTGCAACATCTCCGGTCGCGGATGGCTCCTTCTGGCCTTTCTCGTCT
ACCGTGCCGTTCGATGGACTGCGTAAGGGTAGCGCGGGCGCAGGCGGGGG
GGAGAGTGTGGAATCTATGTCGTTGCTGAAGCAGCAGTCTCCAACATTTG
GCGCCGAGACCGACCATACCTCGACTGCTTCTCGAGCAATAGAAGAACTC
AGACCCCCTAGTGCAACATCTCCGGTCGCGGATGGCTCCTTCTGGCCTTT
CTCGTCTACCGTGCCGTTCGATGGACTGCGTAAGGGTAGCGCGGGCGCAG
GCGGGGGGGAGAGTGTGGAATCTATGTCGTTGCTGAAGCAGCAGAGCATT
GAACGCCCGAAAGACACCAGCACTGTCGTGGACGGGATTGCAGGCCGACC
GTTAGCAGGAGCGCCACCGTCAGGCGTCGGGGGCGGGTTCGGGGTTGGAG
AACTTTTGCGAGTGCTGAGGACAACCGACTCCCCCTCTCCGGCGACGCCC
AGGGACTCCCCACTTCCTCCCAACGGATCTCTAAGGGATTCAGCAGTGAC
GGCGGTGGTGGAGGCGGCGGCGGCAGCGACTAAGGTTGGTGGGGGAGAAA
GCGGGAAGCAGCGGCTGGGATGGGGCATGAGCATTGAACGCCCGAAAGAC
ACCAGCACTGTCGTGGACGGGATTGCAGGCCGACCGTTAGCAGGAGCGCC
ACCGTCAGGCGTCGGGGGCGGGTTCGGGGTTGGAGAACTTTTGCGAGTGC
TGAGGACAACCGACTCCCCCTCTCCGGCGACGCCCAGGGACTCCCCACTT
CCTCCCAACGGATCTCTAAGGGATTCAGCAGTGACGGCGGTGGTGGAGGC
GGCGGCGGCAGCGACTAAGGTTGGTGGGGGAGAAAGCGGGAAGCAGCGGC
TGGGATGGGGCATG
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