prot_H-paniculata_contig9980.17558.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9980.17558.1
Unique Nameprot_H-paniculata_contig9980.17558.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length84
Homology
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A5S6R675_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R675_TRIMR)

HSP 1 Score: 79.0 bits (193), Expect = 2.680e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    2 VGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            VGSLMY +  TRPD AYAV  A ++++ P +  +   KRIF+YL    D G  +G KS+    E + DAD+AGDV+ RKST+
Sbjct:  272 VGSLMYLAIATRPDIAYAVSTASQKLESPTKSDWEAVKRIFKYLRGTTDFGILYGTKSNFGSLEAYSDADFAGDVKSRKSTS 353          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A1X1QS81_9GAMM (Uncharacterized protein n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. M TaxID=1840537 RepID=A0A1X1QS81_9GAMM)

HSP 1 Score: 74.7 bits (182), Expect = 5.850e-15
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0
Query:    2 VGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            +GSL+Y STGTRPD  +AV    +   DP +  +   KRI RYL    DLG  + +  D      + D+DWAGD++DRKST+
Sbjct:   64 IGSLLYLSTGTRPDITFAVSNVAKFCSDPTKRHWIGVKRILRYLKGTSDLGLLYNEGGDLQECFGYSDSDWAGDLDDRKSTS 145          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL)

HSP 1 Score: 75.5 bits (184), Expect = 1.130e-14
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 0
Query:    1 MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            ++GSLM+  +GTRPD  +A+    R  ++P +E +   KR+ RYLS   D+G  F  + D      ++DADWA D+ DRKSTT
Sbjct:   16 LIGSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTT 98          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 75.9 bits (185), Expect = 2.930e-14
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    1 MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKS 81
            M+G LMYA+  TRPD AYAV +  +   +P  E  + CKR+FRYLS   + G  +G + DG  FE + DAD+A +++DRKS
Sbjct:  191 MIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKS 271          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3H8M0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8M0_PHYRM)

HSP 1 Score: 73.6 bits (179), Expect = 3.770e-14
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 0
Query:    2 VGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTF--GDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            VG+LM+  T TRPD AYAV    R M++P  E +   KRIFRYL      G  F  GDK D  G+ D   ADWAGD+ DRKST+
Sbjct:   49 VGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYLQGTKTHGICFKPGDKVDFRGYSD---ADWAGDLADRKSTS 129          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 5.910e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            +VGSLMY S  TRPD A AV    R M +P  + ++  K + RYL+  PD+G TFG  S G   + F DAD AGD++ R+STT
Sbjct:  187 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTT 267          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 6.420e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            +VGSLMY S  TRPD A AV    R M +P  + ++  K + RYL+  PD+G TFG  S G   + F DAD AGD++ R+STT
Sbjct:  739 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTT 819          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 6.510e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            +VGSLMY S  TRPD A AV    R M +P  + ++  K + RYL+  PD+G TFG  S G   + F DAD AGD++ R+STT
Sbjct:  843 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTT 923          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 6.540e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            +VGSLMY S  TRPD A AV    R M +P  + ++  K + RYL+  PD+G TFG  S G   + F DAD AGD++ R+STT
Sbjct: 1005 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTT 1085          
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3H5N2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5N2_PHYRM)

HSP 1 Score: 73.6 bits (179), Expect = 9.180e-14
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 0
Query:    2 VGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTF--GDKSDGHGFEDFIDADWAGDVEDRKSTT 83
            VG+LM+  T TRPD AYAV    R M++P  E +   KRIFRYL      G  F  GDK D  G+ D   ADWAGD+ DRKST+
Sbjct:  160 VGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYLQGTKTHGICFKPGDKIDFRGYSD---ADWAGDLADRKSTS 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S6R675_TRIMR2.680e-1547.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X1QS81_9GAMM5.850e-1543.90Uncharacterized protein n=1 Tax=Cycloclasticus sp.... [more]
A0A182G509_AEDAL1.130e-1442.17Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A146H7K8_MYCCL2.930e-1446.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8M0_PHYRM3.770e-1451.19Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P6UYX8_9CHLO5.910e-1448.19Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A2P6UYV9_9CHLO6.420e-1448.19Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYV5_9CHLO6.510e-1448.19Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6UZ08_9CHLO6.540e-1448.19Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
H3H5N2_PHYRM9.180e-1451.19Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 1..82
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9980contigH-paniculata_contig9980:1340..1591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9980.17558.1mRNA_H-paniculata_contig9980.17558.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9980 1016..1639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9980.17558.1 ID=prot_H-paniculata_contig9980.17558.1|Name=mRNA_H-paniculata_contig9980.17558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPD
LGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like