mRNA_H-paniculata_contig12792.1752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12792.1752.1
Unique NamemRNA_H-paniculata_contig12792.1752.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: D8LRQ4_ECTSI (N/a (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.790e-48
Identity = 103/165 (62.42%), Postives = 109/165 (66.06%), Query Frame = 1 
Query:  418 MESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGGAXXXXXXXXXXXXXXXXXXXXSSRTHGGSDIATAGEASSPLRKGQDQVQPRXXXXXXXAVRSPDERLVLVARSYGRAMCELAGTPDPEGHALLQETLV 912
            ME RLKKLEAAGGP+VLRLVEHM+QRDA KRKTV+EYI RMEKPG LFP+SFGSFLFPLLATMHAG             XXXXXXXXX                    + G              A+RSPDERL LVARSYGRAMCELAGTPDPEGHALLQ  L 
Sbjct:    1 MEERLKKLEAAGGPVVLRLVEHMVQRDAGKRKTVKEYIRRMEKPGTLFPRSFGSFLFPLLATMHAGEGAGEDGDPASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKGG--------------AIRSPDERLALVARSYGRAMCELAGTPDPEGHALLQAALA 151
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.410e-22
Identity = 67/129 (51.94%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:  538 MEKPGMLFPKSFGSFLFPLLATMHAGGAXXXXXXXXXXXXXXXXXXXXSSRTHGGSDIATA----GEASSPLRKGQDQVQPRXXXXXXXAVRSPDERLVLVARSYGRAMCELAGTPDPEGHALLQETLV 912
            MEKPG LFP+SFGSFLFPLLATMHAG                              D+A+A       S P           XXX    A+RSPDERL LVARSYGRAMCELAGTPDPEGHALLQ  L 
Sbjct:    1 MEKPGTLFPRSFGSFLFPLLATMHAGEGAGED-----------------------GDLASAPPSPANGSKPPLPEHXXXXXXXXXCKGGAIRSPDERLALVARSYGRAMCELAGTPDPEGHALLQAALA 106
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A225X0L1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0L1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.920e-19
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            SL ESMD+FS GCVIAE+FLGG PL DLP LL+YR +GD E+  ++L+  G P +  L+ HMLQ D + R +   Y+ +   P  LFP  F +FLF  L  + + G
Sbjct:  302 SLQESMDIFSAGCVIAELFLGGKPLFDLPSLLKYR-TGDSEALRQQLKKVGDPRLEELLLHMLQLDPNARMSASNYLAKYTSPSGLFPTYFDNFLFRFLVLVLSRG 406
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A0W8DI87_PHYNI (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DI87_PHYNI)

HSP 1 Score: 98.6 bits (244), Expect = 5.070e-19
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            SLLESMD+FS GCVIAE+FLGG PL DLP LL+YR +GD E+   +L+  G P +  L+ HMLQ D + R +   Y+ +   P  LFP  F +FLF  L  + + G
Sbjct:  303 SLLESMDIFSAGCVIAELFLGGKPLFDLPSLLKYR-TGDSEALRYQLKKVGDPRLEELLLHMLQLDPTARLSASGYLAKYTSPSGLFPTYFDNFLFRFLVLVLSRG 407
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A3F2RM04_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM04_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.390e-19
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            SLLESMD+FS GCVIAE+FLGG PL DLP LL+YR +G+ ++  + L+  G P +  ++ HMLQ D S R +   Y+T+   P  LFP  F +FLF  L  + + G
Sbjct:  279 SLLESMDIFSAGCVIAELFLGGKPLFDLPSLLKYR-TGNSDALRQTLKKVGDPRLEEMLLHMLQLDPSARLSASGYLTKYTSPSDLFPTYFDNFLFRFLVLVLSRG 383
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A3R7MTH5_9STRA (Non-specific serine/threonine protein kinase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTH5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.540e-19
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            SLLESMD+FS GCVIAE+FLGG PL DLP LL+YR +G+ ++  + L+  G P +  ++ HMLQ D S R +   Y+T+   P  LFP  F +FLF  L  + + G
Sbjct:  279 SLLESMDIFSAGCVIAELFLGGKPLFDLPSLLKYR-TGNSDALRQTLKKVGDPRLEEMLLHMLQLDPSARLSASGYLTKYTSPSDLFPTYFDNFLFRFLVLVLSRG 383
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A0P1AGI3_PLAHL (Non-specific serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGI3_PLAHL)

HSP 1 Score: 98.2 bits (243), Expect = 7.720e-19
Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            SLLESMD+FS GCVIAE+FLGG PL DLP LL+YR +GD+E+  ++++  G   +  ++ HMLQ D S R +   Y+++      LFP  F SFLF  L  + + G
Sbjct:  303 SLLESMDIFSAGCVIAELFLGGKPLFDLPSLLKYRRTGDIETLKQQIKKVGDCDLEEMLLHMLQLDPSARNSASGYLSKYTSLNGLFPTYFDSFLFRFLVLVLSRG 408
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: A0A6A3T4I0_9STRA (Non-specific serine/threonine protein kinase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4I0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.040e-18
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            +LLESMD+FS GCVIAE+FLGG PL DLP LL+YR +GD E    +L+  G P +  L+ HMLQ D S R +   Y+ +   P  LFP  F +FLF  L  + + G
Sbjct:  303 NLLESMDIFSAGCVIAELFLGGKPLFDLPSLLKYR-TGDSEMLRLQLKKIGDPRLEELLLHMLQLDPSARLSASGYLAKYSSPSGLFPTYFDNFLFRFLVLVLSRG 407
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: H3GYM4_PHYRM (Non-specific serine/threonine protein kinase n=16 Tax=Phytophthora TaxID=4783 RepID=H3GYM4_PHYRM)

HSP 1 Score: 97.4 bits (241), Expect = 1.410e-18
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:  301 SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            SLLESMD+FS GCVIAE+FLGG PL DLP LL+YR +GD E+  ++L   G P +  L+ HMLQ D + R +   Y+ +      LFP  F SFLF  L  + + G
Sbjct:  304 SLLESMDIFSAGCVIAELFLGGKPLFDLPSLLKYR-TGDSETLRQQLRKVGDPRLEELLLHMLQLDPNARLSASGYLAKYTSQSGLFPTYFDSFLFRFLVLVLSRG 408
[Close]
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Match: F0WBK1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBK1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.510e-17
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  304 LLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAAGGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLATMHAGG 618
            LLESMD+FS GC IAE+F+GG PL DLP LL+YR +GD    +  L+    PI+ +L+  MLQ D + RK+  +Y+T  +    LFP  F SFLF  LA + + G
Sbjct:  285 LLESMDIFSAGCAIAELFMGGKPLFDLPALLKYRRTGDTSGLIATLKKIQDPILEKLLLDMLQLDPNARKSASQYLT--DNLNRLFPTYFESFLFRFLALVLSCG 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12792.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ4_ECTSI3.790e-4862.42N/a (Partial) (Fragment) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JSX2_9PHAE7.410e-2251.94Non-specific serine/threonine protein kinase n=1 T... [more]
A0A225X0L1_9STRA4.920e-1948.11Non-specific serine/threonine protein kinase n=1 T... [more]
A0A0W8DI87_PHYNI5.070e-1949.06Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3F2RM04_9STRA7.390e-1948.11Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3R7MTH5_9STRA7.540e-1948.11Non-specific serine/threonine protein kinase n=3 T... [more]
A0A0P1AGI3_PLAHL7.720e-1947.17Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A3T4I0_9STRA1.040e-1849.06Non-specific serine/threonine protein kinase n=4 T... [more]
H3GYM4_PHYRM1.410e-1849.06Non-specific serine/threonine protein kinase n=16 ... [more]
F0WBK1_9STRA1.510e-1747.62Non-specific serine/threonine protein kinase n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12792contigH-paniculata_contig12792:1680..4567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue4.7e-20
Seed eggNOG ortholog67593.Physo144363
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3QCEB@4776,KOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Exons3
Model size977
Cds size975
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12792.1752.1prot_H-paniculata_contig12792.1752.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12792 1680..4566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.9898262-CDS-H-paniculata_contig12792:1679..20301622928999.9898262-CDS-H-paniculata_contig12792:1679..2030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12792 1680..2030 +
1691480696.7017505-CDS-H-paniculata_contig12792:1679..20301691480696.7017505-CDS-H-paniculata_contig12792:1679..2030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12792 1680..2030 +
1622929000.0080209-CDS-H-paniculata_contig12792:3387..35581622929000.0080209-CDS-H-paniculata_contig12792:3387..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12792 3388..3558 +
1691480696.715842-CDS-H-paniculata_contig12792:3387..35581691480696.715842-CDS-H-paniculata_contig12792:3387..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12792 3388..3558 +
1622929000.025157-CDS-H-paniculata_contig12792:4113..45661622929000.025157-CDS-H-paniculata_contig12792:4113..4566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12792 4114..4566 +
1691480696.7259016-CDS-H-paniculata_contig12792:4113..45661691480696.7259016-CDS-H-paniculata_contig12792:4113..4566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12792 4114..4566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12792.1752.1

>prot_H-paniculata_contig12792.1752.1 ID=prot_H-paniculata_contig12792.1752.1|Name=mRNA_H-paniculata_contig12792.1752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
EASEIQVRPSWPPPSSPTSPKDASLVVGSGGGAAASCSISASDNRDALGN
TPDGDAQQHQSQRQQQQQQQSGVGSTAGGKGDPTKKTAGAGVPMKGIGRQ
SLLESMDVFSLGCVIAEIFLGGDPLLDLPGLLRYRISGDMESRLKKLEAA
GGPIVLRLVEHMLQRDASKRKTVQEYITRMEKPGMLFPKSFGSFLFPLLA
TMHAGGAAGDPPTTTTTTKDTTPTTPASSRTHGGSDIATAGEASSPLRKG
QDQVQPRRRRRRRRAVRSPDERLVLVARSYGRAMCELAGTPDPEGHALLQ
ETLVGLNPSSAGEEDRRGGGHGREG
back to top

mRNA from alignment at H-paniculata_contig12792:1680..4567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12792.1752.1 ID=mRNA_H-paniculata_contig12792.1752.1|Name=mRNA_H-paniculata_contig12792.1752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2888bp|location=Sequence derived from alignment at H-paniculata_contig12792:1680..4567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGAGCGAGATTCAAGTGAGACCGTCATGGCCCCCTCCATCATCCCC
AACCTCTCCCAAAGACGCCTCACTTGTAGTCGGGAGCGGCGGTGGGGCTG
CTGCTTCTTGTTCTATCTCCGCATCTGACAACAGGGACGCTCTCGGCAAC
ACCCCAGACGGCGACGCCCAGCAACATCAGTCGCAGCGGCAGCAACAACA
ACAGCAGCAATCGGGGGTCGGTAGCACTGCAGGGGGAAAAGGCGATCCCA
CCAAGAAAACGGCGGGGGCTGGGGTACCCATGAAGGGAATAGGCAGACAG
AGTCTGTTGGAGTCCATGGACGTTTTCAGTCTCGGATGCGTCATTGCCGA
GGTGCGTCTTGTGGCATGTGCTGTAATGTCCTTTCACCCCTGCTGCAAAC
CTAAAGGATGGTGTCGATACTGATAAGAGGGGTGTAACCAAATGCCACGC
ACGAAAGGCCATGCTCTGGCCATTTTTTTCATGGGGAATTCAGTATATGT
AACCGCCGACACTCTGAACATGAAGGTCCAAAATTCTGTCGAAATAGGCA
AGAAACCGATACCTGTTGCCACCGAACTGACCAAGTCGCAATTCATTTTG
GCAACCACCGCGCGCTGGCATTTTCGTTTTGTTGGATGATGATAGAATAT
ATATATATGCGGTACATGGAATAAAAACCAGCAACAGCAGAGATGATGAT
AAATATGCTGTACTGCACAATATTCAAAAATGAACCCAGCCGTTTGGACT
GTCGCACGGACTGCGCTGCATCAAATCCAGTACAATATCCACAAATATCC
CGTATATTGAAGCAGGAGGCGCCACCCTTCAAGTGTTCTTCCTGACCTCA
TTTCTTGATATGCAAAATTATGCACATTATCGTAACATTCCTTAAAACTC
AAGCTATTATTCTCACGCGCGTTGGTCAACTATGGAGCACTAGAATTTGG
GCGAAGCAACCTTGACCGAGAGCATCAGCTATCCCGCAGTTGAAGCGTAG
AGTTTTAGGGTATGACTGCGGCAGACCGAAAAATTTACGCCCTGAGCAAA
AGTCCGGCCAAGAACTTCACTCCCTCATGAGGCCACAGTGGCACCTATTC
TTGTCCCTCTCGTCGTGGGCGTCAGTCCAACGGGCTGTAGGAGGGCCTCG
TGCCGTACGTCAGCTACTACAAAAAAAGACGTCCGTGTTTGACCCAGACC
TATGGATAATGACTAGAGGGTGTATCCCTCATAACTAAAAAGGCTTCGAT
TTTGGTTAGTTTTTTATTTTGTGTGTTTTATGTTGGTTATCAATATGGGT
ATTTGTTGTCTATCGCACCCGGAGGTGCGAACTGCGAACGTTTTTAAACG
TGATTTATTCAACTTTCACCTGCCCACCCCTACTCCTCCCCTCTTAAACT
GAAGAATGCAATCAAGAGGTCCTTGAAATTTGGGACTGCGAAATAAAATG
CGATAGCAGTTCTCGGTGGTGTTGACAGGTGGCTTGAAAGGCCGAAAATT
GGGGAAGAAATAGGACAGGTGTATTAGATTGTTTTCGCCATATTTGGCGA
CGTAGAGAAGGGGTGATAAGCCATCGGATATCGCTCTGATACGAACGAAG
CTCCGTCCTCTCGAGATGCGTGTGGTCAACGTTTTAACAATTGCAGTATG
CAAAACAAGAGTACCCCCGCTCCCCACTCGCGTCCATCGTTTCCCCCCGT
CGCCGTAGATCTTCTTGGGAGGGGACCCGCTGTTAGACCTGCCCGGCCTT
TTACGATATCGCATCTCCGGAGATATGGAGTCCAGACTCAAGAAGCTCGA
GGCGGCCGGGGGTCCCATCGTGTTGAGACTTGTCGAGCACATGCTCCAGC
GGGATGCGAGCAAACGCAAGACGGTCCAGGTAAGCAGCGTTACGGAAATA
TATTGCCAATGAAAACAAAGGAATAATGTTGTACTTACTCTTTGTCAGGG
ATATATACCACATATCTATGGTAGGAACCATATCTATAAAACATTTGGAA
AAAGAAAAAAACTTGTAACATTTGGAGTGTACATGGCTAAGTAGCGAATT
GCTTTTTCTTATCGTTTTTTTTTACTCGATCAAGAAGGAGATCCTGGATG
TGGGGTTTACGCAAAATCGTTTCTGACAGACGTGCCCTTGCTTACTATCC
TTGTTGGTCGCATTTGGTTTTAAGCTTTCCGACAGTCGATATGATGAAAT
TCTGCTCTGTGGAATCTTCCTCGAGGCGGTTTGACCTCTCATGCAGTGCG
TATATCTCAAGTGCTCGTGCTATGCTGCTGCTGTTAACAGATTGTGGTCT
CTGACTGTTGAGCTAGCCTCTTCCCTGTTTCCCTTCGTTGATATAACACA
AGCGCATCGCTATCCCCCGTCGCAACCCCCCCCCTAAAAAAAAACCAAAC
CGAATCAAACCAAACCAACCGAAAAAAATAACAGGAATACATAACCCGGA
TGGAGAAGCCGGGTATGCTCTTCCCCAAATCCTTCGGCTCTTTCCTGTTC
CCGCTGCTGGCCACTATGCACGCCGGCGGAGCAGCCGGCGACCCCCCTAC
CACTACCACCACCACCAAGGACACCACACCTACTACACCCGCCTCAAGCC
GCACCCACGGTGGAAGCGATATAGCCACGGCAGGAGAAGCAAGCTCGCCA
CTGCGAAAAGGTCAGGATCAGGTCCAGCCGCGGCGGAGGCGGCGGAGGCG
GCGGGCGGTGAGATCGCCCGACGAACGGCTAGTCTTGGTGGCACGGTCGT
ACGGGAGGGCTATGTGCGAGCTAGCCGGGACGCCGGATCCCGAGGGGCAT
GCACTCTTGCAAGAGACGCTAGTTGGGTTGAACCCCAGTAGTGCAGGAGA
GGAGGACCGACGAGGAGGCGGGCATGGGAGAGAGGGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12792:1680..4567+

>mRNA_H-paniculata_contig12792.1752.1 ID=mRNA_H-paniculata_contig12792.1752.1|Name=mRNA_H-paniculata_contig12792.1752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig12792:1680..4567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGAGCGAGATTCAAGTGAGACCGTCATGGCCCCCTCCATCATCCCC
AACCTCTCCCAAAGACGCCTCACTTGTAGTCGGGAGCGGCGGTGGGGCTG
CTGCTTCTTGTTCTATCTCCGCATCTGACAACAGGGACGCTCTCGGCAAC
ACCCCAGACGGCGACGCCCAGCAACATCAGTCGCAGCGGCAGCAACAACA
ACAGCAGCAATCGGGGGTCGGTAGCACTGCAGGGGGAAAAGGCGATCCCA
CCAAGAAAACGGCGGGGGCTGGGGTACCCATGAAGGGAATAGGCAGACAG
AGTCTGTTGGAGTCCATGGACGTTTTCAGTCTCGGATGCGTCATTGCCGA
GGAAGCGAGCGAGATTCAAGTGAGACCGTCATGGCCCCCTCCATCATCCC
CAACCTCTCCCAAAGACGCCTCACTTGTAGTCGGGAGCGGCGGTGGGGCT
GCTGCTTCTTGTTCTATCTCCGCATCTGACAACAGGGACGCTCTCGGCAA
CACCCCAGACGGCGACGCCCAGCAACATCAGTCGCAGCGGCAGCAACAAC
AACAGCAGCAATCGGGGGTCGGTAGCACTGCAGGGGGAAAAGGCGATCCC
ACCAAGAAAACGGCGGGGGCTGGGGTACCCATGAAGGGAATAGGCAGACA
GAGTCTGTTGGAGTCCATGGACGTTTTCAGTCTCGGATGCGTCATTGCCG
AGATCTTCTTGGGAGGGGACCCGCTGTTAGACCTGCCCGGCCTTTTACGA
TATCGCATCTCCGGAGATATGGAGTCCAGACTCAAGAAGCTCGAGGCGGC
CGGGGGTCCCATCGTGTTGAGACTTGTCGAGCACATGCTCCAGCGGGATG
CGAGCAAACGCAAGACGGTCCAGATCTTCTTGGGAGGGGACCCGCTGTTA
GACCTGCCCGGCCTTTTACGATATCGCATCTCCGGAGATATGGAGTCCAG
ACTCAAGAAGCTCGAGGCGGCCGGGGGTCCCATCGTGTTGAGACTTGTCG
AGCACATGCTCCAGCGGGATGCGAGCAAACGCAAGACGGTCCAGGAATAC
ATAACCCGGATGGAGAAGCCGGGTATGCTCTTCCCCAAATCCTTCGGCTC
TTTCCTGTTCCCGCTGCTGGCCACTATGCACGCCGGCGGAGCAGCCGGCG
ACCCCCCTACCACTACCACCACCACCAAGGACACCACACCTACTACACCC
GCCTCAAGCCGCACCCACGGTGGAAGCGATATAGCCACGGCAGGAGAAGC
AAGCTCGCCACTGCGAAAAGGTCAGGATCAGGTCCAGCCGCGGCGGAGGC
GGCGGAGGCGGCGGGCGGTGAGATCGCCCGACGAACGGCTAGTCTTGGTG
GCACGGTCGTACGGGAGGGCTATGTGCGAGCTAGCCGGGACGCCGGATCC
CGAGGGGCATGCACTCTTGCAAGAGACGCTAGTTGGGTTGAACCCCAGTA
GTGCAGGAGAGGAGGACCGACGAGGAGGCGGGCATGGGAGAGAGGGGGAA
TACATAACCCGGATGGAGAAGCCGGGTATGCTCTTCCCCAAATCCTTCGG
CTCTTTCCTGTTCCCGCTGCTGGCCACTATGCACGCCGGCGGAGCAGCCG
GCGACCCCCCTACCACTACCACCACCACCAAGGACACCACACCTACTACA
CCCGCCTCAAGCCGCACCCACGGTGGAAGCGATATAGCCACGGCAGGAGA
AGCAAGCTCGCCACTGCGAAAAGGTCAGGATCAGGTCCAGCCGCGGCGGA
GGCGGCGGAGGCGGCGGGCGGTGAGATCGCCCGACGAACGGCTAGTCTTG
GTGGCACGGTCGTACGGGAGGGCTATGTGCGAGCTAGCCGGGACGCCGGA
TCCCGAGGGGCATGCACTCTTGCAAGAGACGCTAGTTGGGTTGAACCCCA
GTAGTGCAGGAGAGGAGGACCGACGAGGAGGCGGGCATGGGAGAGAGGGG
back to top