mRNA_H-paniculata_contig12786.1746.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12786.1746.1
Unique NamemRNA_H-paniculata_contig12786.1746.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.130e-22
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            F+DFRMRRS A+V+KIRRDRA+LPIA F++AIV AVASNPCVLVAGDTGCGKSTQV
Sbjct:  347 FIDFRMRRSLAKVVKIRRDRASLPIAAFQNAIVRAVASNPCVLVAGDTGCGKSTQV 402
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: A0A6H5K4A6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.620e-21
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            F+DFRMRRS  +V+KIRRDRA+LPIA F+ AIV AVASNPCVLVAGDTGCGKSTQV
Sbjct:  382 FIDFRMRRSLTKVVKIRRDRASLPIAAFQDAIVRAVASNPCVLVAGDTGCGKSTQV 437
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: UPI00074FB632 (probable ATP-dependent RNA helicase DHX34 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FB632)

HSP 1 Score: 79.3 bits (194), Expect = 6.430e-16
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            FLDF+ +RSFAR+ +++RDRAALPIA F  A+++AVA +P V+VAGDTGCGKSTQV
Sbjct:  111 FLDFQQKRSFARLAQLQRDRAALPIARFREALLTAVARSPVVVVAGDTGCGKSTQV 166
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: A0A226MC08_CALSU (Uncharacterized protein (Fragment) n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226MC08_CALSU)

HSP 1 Score: 75.1 bits (183), Expect = 3.550e-15
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            +LDF  +RSF+++ KIRRDR+ALPIA +  AI+SAVA +  V+VAGDTGCGKSTQV
Sbjct:  124 YLDFAQKRSFSKLAKIRRDRSALPIARYREAILSAVARHRVVVVAGDTGCGKSTQV 179
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: UPI001C66DFB4 (probable ATP-dependent RNA helicase DHX34 n=1 Tax=Lagopus leucura TaxID=30410 RepID=UPI001C66DFB4)

HSP 1 Score: 73.2 bits (178), Expect = 1.870e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            +LDF  ++SF+++ KIRRDRAALPIA F   I+ AVA +  VLVAGDTGCGKSTQV
Sbjct:  122 YLDFTQKQSFSKLAKIRRDRAALPIARFREPILRAVARHRVVLVAGDTGCGKSTQV 177
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: A0A226PJT2_COLVI (Helicase ATP-binding domain-containing protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226PJT2_COLVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.970e-14
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            +LDF  +RSF+++ KIRRDR+ALPIA +  AI+SAVA +  V+VAGDTGCGKSTQV
Sbjct:  123 YLDFAQKRSFSKLAKIRRDRSALPIARYREAILSAVARHRVVVVAGDTGCGKSTQV 178
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: UPI0020266C50 (probable ATP-dependent RNA helicase DHX34 isoform X1 n=4 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI0020266C50)

HSP 1 Score: 75.1 bits (183), Expect = 1.990e-14
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            FLDFR +RSF+R+ +++R+RAALPIA F   +++AVA N  V+VAGDTGCGKSTQV
Sbjct:  102 FLDFRQKRSFSRLAQLQRERAALPIARFREPLLAAVARNQVVVVAGDTGCGKSTQV 157
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: A0A7L0MUN8_9PSIT (DHX34 helicase (Fragment) n=2 Tax=Amazona TaxID=12929 RepID=A0A7L0MUN8_9PSIT)

HSP 1 Score: 74.7 bits (182), Expect = 2.720e-14
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            +LDF  +RSFA++LK+ R+RAALPIA +   +++AVA +P V+VAGDTGCGKSTQV
Sbjct:   33 YLDFTQKRSFAKLLKLHRERAALPIAQYRERLLAAVARHPVVVVAGDTGCGKSTQV 88
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BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: A0A1V4KE20_PATFA (Putative ATP-dependent RNA helicase DHX34-like n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4KE20_PATFA)

HSP 1 Score: 73.9 bits (180), Expect = 3.310e-14
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            +LDF  +RSFA++ KI+++RAALPI  +   I+SAVA NP V++AGDTGCGKSTQV
Sbjct:  114 YLDFAQKRSFAKLAKIQKERAALPIWRYRERILSAVAENPVVVIAGDTGCGKSTQV 169
[Close]
BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Match: UPI00192F6BA8 (probable ATP-dependent RNA helicase DHX34 isoform X1 n=3 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F6BA8)

HSP 1 Score: 73.9 bits (180), Expect = 5.070e-14
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FLDFRMRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQV 168
            FLDF  RRS AR+++++R+RAALPIA    A+++A+A +P VLVAGDTGCGKSTQV
Sbjct:   89 FLDFAQRRSLARLVRLQRERAALPIARSREALLAALARSPVVLVAGDTGCGKSTQV 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12786.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ4_ECTSI7.130e-2283.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4A6_9PHAE4.620e-2182.14Helicase ATP-binding domain-containing protein n=1... [more]
UPI00074FB6326.430e-1667.86probable ATP-dependent RNA helicase DHX34 n=1 Tax=... [more]
A0A226MC08_CALSU3.550e-1566.07Uncharacterized protein (Fragment) n=1 Tax=Callipe... [more]
UPI001C66DFB41.870e-1466.07probable ATP-dependent RNA helicase DHX34 n=1 Tax=... [more]
A0A226PJT2_COLVI1.970e-1466.07Helicase ATP-binding domain-containing protein n=1... [more]
UPI0020266C501.990e-1464.29probable ATP-dependent RNA helicase DHX34 isoform ... [more]
A0A7L0MUN8_9PSIT2.720e-1462.50DHX34 helicase (Fragment) n=2 Tax=Amazona TaxID=12... [more]
A0A1V4KE20_PATFA3.310e-1462.50Putative ATP-dependent RNA helicase DHX34-like n=1... [more]
UPI00192F6BA85.070e-1464.29probable ATP-dependent RNA helicase DHX34 isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12786contigH-paniculata_contig12786:240..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.5e-15
Seed eggNOG ortholog2880.D8LEZ4
Preferred nameDHX34
KEGG koko:K20101
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070035,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons1
Model size168
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.2254739-CDS-H-paniculata_contig12786:239..3921622928999.2254739-CDS-H-paniculata_contig12786:239..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12786 240..392 -
1691480696.4079065-CDS-H-paniculata_contig12786:239..3921691480696.4079065-CDS-H-paniculata_contig12786:239..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12786 240..392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.2646227-UTR-H-paniculata_contig12786:392..4071622928999.2646227-UTR-H-paniculata_contig12786:392..407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12786 393..407 -
1691480696.4224837-UTR-H-paniculata_contig12786:392..4071691480696.4224837-UTR-H-paniculata_contig12786:392..407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12786 393..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12786.1746.1prot_H-paniculata_contig12786.1746.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12786 240..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12786.1746.1

>prot_H-paniculata_contig12786.1746.1 ID=prot_H-paniculata_contig12786.1746.1|Name=mRNA_H-paniculata_contig12786.1746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MRRSFARVLKIRRDRAALPIAGFEHAIVSAVASNPCVLVAGDTGCGKSTQ
V
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mRNA from alignment at H-paniculata_contig12786:240..407-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12786.1746.1 ID=mRNA_H-paniculata_contig12786.1746.1|Name=mRNA_H-paniculata_contig12786.1746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig12786:240..407- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTCGACTTTCGCATGAGACGTAGCTTTGCGAGGGTGCTCAAGATCCG
CCGCGACCGAGCGGCGTTACCCATCGCAGGTTTTGAACACGCTATCGTTA
GCGCCGTCGCGTCGAATCCGTGCGTGCTAGTGGCGGGGGATACCGGCTGT
GGTAAAAGTACACAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12786:240..407-

>mRNA_H-paniculata_contig12786.1746.1 ID=mRNA_H-paniculata_contig12786.1746.1|Name=mRNA_H-paniculata_contig12786.1746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig12786:240..407- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACGTAGCTTTGCGAGGGTGCTCAAGATCCGCCGCGACCGAGCGGC
GTTACCCATCGCAGGTTTTGAACACGCTATCGTTAGCGCCGTCGCGTCGA
ATCCGTGCGTGCTAGTGGCGGGGGATACCGGCTGTGGTAAAAGTACACAG
GTGATGAGACGTAGCTTTGCGAGGGTGCTCAAGATCCGCCGCGACCGAGC
GGCGTTACCCATCGCAGGTTTTGAACACGCTATCGTTAGCGCCGTCGCGT
CGAATCCGTGCGTGCTAGTGGCGGGGGATACCGGCTGTGGTAAAAGTACA
CAGGTG
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