mRNA_H-paniculata_contig12773.1743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12773.1743.1
Unique NamemRNA_H-paniculata_contig12773.1743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12773.1743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12773contigH-paniculata_contig12773:3165..4771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size432
Cds size432
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12773.1743.1prot_H-paniculata_contig12773.1743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12773 3165..4771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.914631-CDS-H-paniculata_contig12773:3164..32481622928998.914631-CDS-H-paniculata_contig12773:3164..3248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 3165..3248 +
1691480696.294723-CDS-H-paniculata_contig12773:3164..32481691480696.294723-CDS-H-paniculata_contig12773:3164..3248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 3165..3248 +
1622928998.9451275-CDS-H-paniculata_contig12773:3572..36771622928998.9451275-CDS-H-paniculata_contig12773:3572..3677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 3573..3677 +
1691480696.3047435-CDS-H-paniculata_contig12773:3572..36771691480696.3047435-CDS-H-paniculata_contig12773:3572..3677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 3573..3677 +
1622928998.959911-CDS-H-paniculata_contig12773:4128..41621622928998.959911-CDS-H-paniculata_contig12773:4128..4162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 4129..4162 +
1691480696.313656-CDS-H-paniculata_contig12773:4128..41621691480696.313656-CDS-H-paniculata_contig12773:4128..4162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 4129..4162 +
1622928998.9720876-CDS-H-paniculata_contig12773:4562..47711622928998.9720876-CDS-H-paniculata_contig12773:4562..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 4563..4771 +
1691480696.3228002-CDS-H-paniculata_contig12773:4562..47711691480696.3228002-CDS-H-paniculata_contig12773:4562..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12773 4563..4771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12773.1743.1

>prot_H-paniculata_contig12773.1743.1 ID=prot_H-paniculata_contig12773.1743.1|Name=mRNA_H-paniculata_contig12773.1743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
AETVFVGTYTSTGTTTLTGLGEVTPFEELSPADFPLIASTSINKVIISSP
ADTPAGQWLSILEVRLETYGVTCQASNPYQSCGPDAVEDRLSAETYLNMA
DDELWELLVNGKGIGLCNIRVAWAGEPTDLYVHTGIATFPDDG*
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mRNA from alignment at H-paniculata_contig12773:3165..4771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12773.1743.1 ID=mRNA_H-paniculata_contig12773.1743.1|Name=mRNA_H-paniculata_contig12773.1743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1607bp|location=Sequence derived from alignment at H-paniculata_contig12773:3165..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGAAACAGTGTTTGTGGGCACCTACACAAGCACGGGCACAACCACACT
CACTGGCTTGGGAGAAGTTACTCCCTTCGAGGAGGTGATAAGCGAGATGT
ACCAGATAGAGTAGGCGAGCGTCAATAATGTAGGCCGTCATCTCTCTCGA
AACCGTACGGGCGGCGGATGGGTGATAGTGTCTTTCGATGGCACCTATGT
TCACTTGCCTCCACCCGCTACACAAAATATGAAATTTTTCACCAGCATTA
AATAATTTCAAGTTTTGTGTTCGAGTGATGTAAATAGCGTAGAGTATGCC
TTCAAATTCTTATCATTCATACCGCGCGTTTTCCGCTAGTAAGGGGCATG
TCTAGTACCTAACAACAACCTATATTTTGTTCATTTCAACATCCTCGATA
CCCTACAGCTCAGTCCAGCAGACTTCCCACTGATAGCATCTACTTCAATT
AACAAGGTCATCATCAGCTCCCCTGCGGACACACCCGCAGGACAATGGCT
TAGCATCCTGGAGGTAAGACACAGAGAGAAGAGAGCATTTTCATTTGTGT
CCACAGAGCGATCTTACGGTCTCGATGGCACCGGTACGGTGAACAGATAC
CCAGATGGGTTTCCTCCCGAATCGGAATTGCGAACATCAGGAGTTCACAA
TGGGATTAAACGATATGAAAGTTGGAAGCGCCCAAATCTTACACGGGTCA
AATATCATTCGTGTTCGGGCCAAGCCTAGGCGTTGGACAGCGACCAACCG
GTCTTCCGCATGTAGTATCTAAAGACCTAAAGCTACACATTTCTCGGATC
GACTGCCGTAGTGAGTGACTGAGACGCGAACATGGAGTCCTCAGCCGACC
ATGTCTTCTCCGTACACTATCTTCTTGTAGTCCTTCGACGTGCAAGAAAA
CATGAATAATAAACACTCAAGTGCCTAGATCATCACACCTACTACGCCCG
CCGTTGTTCCGCAGGTGAGACTGGAGACTTATGGGGTCACCTGTCAAGGT
GAGCACTGTAAAATGACAGAGTTACTACCGTGGGAAACAGTTAGATCATA
TAAATATACGACGTTAATCCTTGCCTTTGTTCGCACCTATGCTCCCCTCG
CCGAGCAAGCCGTGTACAATAGCTACAACATCGTGCGTGCGCTGTTGATA
ATTCATTTTGTTTTTCCTAGCTAGCACGGAGATGATTGCACACAGAAACT
CACCATACCCCTAGTAATTATCAGACACTCGCATGACGGCATAAGATTGA
TAGGTTTCTCAGTTTACGCCCTTCGGCCATTTCACATCTACAACCGAAGT
CCCACAGTCCGGCGGGAACCTTTGCGCCTAATTTTACTCGTTTTTGCCGC
TCCACCGCATCTCGATCCACACTGCCTTATTCCTTCAACCTCAATCAGCG
AGCAATCCCTACCAAAGCTGTGGACCAGATGCTGTGGAGGACAGGCTATC
AGCAGAGACATACCTCAACATGGCAGACGACGAGCTATGGGAGCTGTTGG
TGAACGGGAAGGGTATTGGACTTTGCAACATTAGGGTGGCTTGGGCTGGC
GAGCCGACAGACCTATATGTGCACACAGGCATCGCAACATTTCCTGACGA
TGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12773:3165..4771+

>mRNA_H-paniculata_contig12773.1743.1 ID=mRNA_H-paniculata_contig12773.1743.1|Name=mRNA_H-paniculata_contig12773.1743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig12773:3165..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGAAACAGTGTTTGTGGGCACCTACACAAGCACGGGCACAACCACACT
CACTGGCTTGGGAGAAGTTACTCCCTTCGAGGAGGCGGAAACAGTGTTTG
TGGGCACCTACACAAGCACGGGCACAACCACACTCACTGGCTTGGGAGAA
GTTACTCCCTTCGAGGAGCTCAGTCCAGCAGACTTCCCACTGATAGCATC
TACTTCAATTAACAAGGTCATCATCAGCTCCCCTGCGGACACACCCGCAG
GACAATGGCTTAGCATCCTGGAGCTCAGTCCAGCAGACTTCCCACTGATA
GCATCTACTTCAATTAACAAGGTCATCATCAGCTCCCCTGCGGACACACC
CGCAGGACAATGGCTTAGCATCCTGGAGGTGAGACTGGAGACTTATGGGG
TCACCTGTCAAGGTGAGACTGGAGACTTATGGGGTCACCTGTCAAGCGAG
CAATCCCTACCAAAGCTGTGGACCAGATGCTGTGGAGGACAGGCTATCAG
CAGAGACATACCTCAACATGGCAGACGACGAGCTATGGGAGCTGTTGGTG
AACGGGAAGGGTATTGGACTTTGCAACATTAGGGTGGCTTGGGCTGGCGA
GCCGACAGACCTATATGTGCACACAGGCATCGCAACATTTCCTGACGATG
GGTAACGAGCAATCCCTACCAAAGCTGTGGACCAGATGCTGTGGAGGACA
GGCTATCAGCAGAGACATACCTCAACATGGCAGACGACGAGCTATGGGAG
CTGTTGGTGAACGGGAAGGGTATTGGACTTTGCAACATTAGGGTGGCTTG
GGCTGGCGAGCCGACAGACCTATATGTGCACACAGGCATCGCAACATTTC
CTGACGATGGGTAA
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