mRNA_H-paniculata_contig12765.1736.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12765.1736.1
Unique NamemRNA_H-paniculata_contig12765.1736.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A6H5KQ50_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ50_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.290e-27
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1
Query:   25 QLTGPGQLGEGSDESFALIYSSLVLHHVKDCEGTVTALAGYLRPG-GRLLLFDFEATENAELFHPEDF 225
            +LTGPGQLGEG+D+SFAL YSSL LHH++DCE TV+ALAGYLRPG GRL+LFD EATE+A  FHP DF
Sbjct:  106 ELTGPGQLGEGADDSFALAYSSLTLHHIRDCERTVSALAGYLRPGSGRLVLFDLEATEDAHKFHPADF 173          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A812WZV4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812WZV4_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 4.670e-10
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   13 LNLKQLTGPGQLGEGSDESFALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFEATENAELFH 213
            L+ K +  PG L      SF  I S L +HH++DCE  +  LA +L P GR+++ DFEATENA LFH
Sbjct:  232 LSAKMVATPGPLNVLG--SFDTIVSLLCIHHIRDCEAQLRELATHLSPSGRIVVIDFEATENARLFH 296          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A812WSX4_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812WSX4_SYMPI)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   70 FALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFEATENAELFH 213
            F LI S L +HHV+DC+  +  LA +L  GGR+++ DFEATENA LFH
Sbjct:  130 FDLIVSLLCIHHVRDCQAQLGELARHLSRGGRVVIVDFEATENARLFH 177          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A812PF38_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PF38_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   67 SFALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFEATENAELFH 213
            SF  I S L +HH++DC+  ++ LA +L P GR+++ DFEAT+NA LFH
Sbjct:  130 SFDTIVSLLCIHHIRDCKAQLSELATHLSPTGRIVVIDFEATQNARLFH 178          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A812NW04_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NW04_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   70 FALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFEATENAELFH 213
            F  I S L +HH++DCE  +  LA +L   GRL++ DFEATENA LFH
Sbjct:  283 FDTIVSLLCIHHIRDCEAQLRDLARHLSTDGRLIVVDFEATENARLFH 330          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A2J5HWU2_9EURO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Aspergillus taichungensis TaxID=482145 RepID=A0A2J5HWU2_9EURO)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-7
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   40 GQLGEGSDESFALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFEAT-ENAELFHP 216
            G  G+G    F LI S LVLHHV D +  +T + G L+PGGR+LL DFE     A  FHP
Sbjct:  123 GTDGDGGRRKFDLILSHLVLHHVPDIKALLTTMLGCLKPGGRVLLTDFEDFGPEAMWFHP 182          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A2I2FI81_9EURO (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Aspergillus TaxID=5052 RepID=A0A2I2FI81_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 1.290e-6
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   40 GQLGEGSDESFALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFE-ATENAELFHP 216
            G  G G+   F LI S LVLHHV D +  +T + G L+PGGR+LL D++ A      FHP
Sbjct:  124 GTDGSGARRKFDLILSHLVLHHVPDVKALLTTMMGCLKPGGRVLLTDYQDAGPECMWFHP 183          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A3D9VBI5_THECX (Methyltransferase family protein n=1 Tax=Thermasporomyces composti TaxID=696763 RepID=A0A3D9VBI5_THECX)

HSP 1 Score: 49.7 bits (117), Expect = 2.730e-5
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   58 SDESFALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFE 186
            +DESF L+ SS  LHH +D E  V  LA  LRPGG L+++DF+
Sbjct:  121 ADESFDLVVSSFSLHHWEDPEAAVAELARVLRPGGALVIYDFD 163          
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Match: A0A7W0HLS6_9DELT (Ubiquinone/menaquinone biosynthesis C-methylase UbiE n=1 Tax=Desulfosalsimonas propionicica TaxID=332175 RepID=A0A7W0HLS6_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 5.150e-5
Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 1
Query:   49 GEGSDESFALIYSSLVLHHVKDCEGTVTALAGYLRPGGRLLLFDFEATENAELFH 213
            GE   E F LI+SS+VLHHVKD +  +      L PGGRL L D +A +    FH
Sbjct:   99 GEVPGERFDLIFSSMVLHHVKDVDNLLGTFFKLLNPGGRLALADLDAEDGG--FH 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12765.1736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KQ50_9PHAE1.290e-2776.47Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A812WZV4_9DINO4.670e-1047.76Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812WSX4_SYMPI5.560e-956.25Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A812PF38_9DINO1.320e-851.02Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812NW04_9DINO1.010e-754.17Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A2J5HWU2_9EURO2.530e-750.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A2I2FI81_9EURO1.290e-646.67S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A3D9VBI5_THECX2.730e-553.49Methyltransferase family protein n=1 Tax=Thermaspo... [more]
A0A7W0HLS6_9DELT5.150e-547.27Ubiquinone/menaquinone biosynthesis C-methylase Ub... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12765contigH-paniculata_contig12765:218..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.9115648-CDS-H-paniculata_contig12765:217..4421622928997.9115648-CDS-H-paniculata_contig12765:217..442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12765 218..442 -
1691480695.9478176-CDS-H-paniculata_contig12765:217..4421691480695.9478176-CDS-H-paniculata_contig12765:217..442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12765 218..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12765.1736.1prot_H-paniculata_contig12765.1736.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12765 218..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12765.1736.1

>prot_H-paniculata_contig12765.1736.1 ID=prot_H-paniculata_contig12765.1736.1|Name=mRNA_H-paniculata_contig12765.1736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
VLFPLNLKQLTGPGQLGEGSDESFALIYSSLVLHHVKDCEGTVTALAGYL
RPGGRLLLFDFEATENAELFHPEDF
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mRNA from alignment at H-paniculata_contig12765:218..442-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12765.1736.1 ID=mRNA_H-paniculata_contig12765.1736.1|Name=mRNA_H-paniculata_contig12765.1736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig12765:218..442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTCTTCCCGTTGAACCTGAAACAGCTCACAGGTCCAGGACAACTAGG GGAAGGTTCTGATGAATCGTTTGCCCTGATTTACTCTAGCCTCGTGCTGC ACCATGTCAAGGATTGTGAGGGCACAGTGACGGCTCTTGCGGGCTACCTG CGACCGGGAGGTCGCCTGCTGCTGTTCGATTTCGAGGCGACCGAAAACGC GGAGCTTTTCCATCCGGAAGATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12765:218..442-

>mRNA_H-paniculata_contig12765.1736.1 ID=mRNA_H-paniculata_contig12765.1736.1|Name=mRNA_H-paniculata_contig12765.1736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig12765:218..442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTCTTCCCGTTGAACCTGAAACAGCTCACAGGTCCAGGACAACTAGG
GGAAGGTTCTGATGAATCGTTTGCCCTGATTTACTCTAGCCTCGTGCTGC
ACCATGTCAAGGATTGTGAGGGCACAGTGACGGCTCTTGCGGGCTACCTG
CGACCGGGAGGTCGCCTGCTGCTGTTCGATTTCGAGGCGACCGAAAACGC
GGAGCTTTTCCATCCGGAAGATTTCGTCCTCTTCCCGTTGAACCTGAAAC
AGCTCACAGGTCCAGGACAACTAGGGGAAGGTTCTGATGAATCGTTTGCC
CTGATTTACTCTAGCCTCGTGCTGCACCATGTCAAGGATTGTGAGGGCAC
AGTGACGGCTCTTGCGGGCTACCTGCGACCGGGAGGTCGCCTGCTGCTGT
TCGATTTCGAGGCGACCGAAAACGCGGAGCTTTTCCATCCGGAAGATTTC
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