mRNA_H-paniculata_contig9668.17352.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9668.17352.1
Unique NamemRNA_H-paniculata_contig9668.17352.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9668.17352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9668contigH-paniculata_contig9668:5876..6323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.3362772-CDS-H-paniculata_contig9668:5875..59921622931198.3362772-CDS-H-paniculata_contig9668:5875..5992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9668 5876..5992 +
1691481634.5374513-CDS-H-paniculata_contig9668:5875..59921691481634.5374513-CDS-H-paniculata_contig9668:5875..5992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9668 5876..5992 +
1622931198.3533545-CDS-H-paniculata_contig9668:6252..63211622931198.3533545-CDS-H-paniculata_contig9668:6252..6321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9668 6253..6321 +
1691481634.549937-CDS-H-paniculata_contig9668:6252..63211691481634.549937-CDS-H-paniculata_contig9668:6252..6321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9668 6253..6321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9668.17352.1prot_H-paniculata_contig9668.17352.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9668 5876..6321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9668.17352.1

>prot_H-paniculata_contig9668.17352.1 ID=prot_H-paniculata_contig9668.17352.1|Name=mRNA_H-paniculata_contig9668.17352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
RYTHEVLPAARSTVWLRGSTLSRAVPRKIYGVDHSMLPEQTQVSTVLVGH
RVHNTTVQAGHM
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mRNA from alignment at H-paniculata_contig9668:5876..6323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9668.17352.1 ID=mRNA_H-paniculata_contig9668.17352.1|Name=mRNA_H-paniculata_contig9668.17352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=448bp|location=Sequence derived from alignment at H-paniculata_contig9668:5876..6323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATACACTCACGAGGTTCTGCCGGCGGCCCGCAGTACGGTCTGGCTCCG
GGGCAGTACGTTGTCCCGGGCGGTGCCCCGCAAGATCTACGGAGTGGACC
ACAGTATGCTCCCGGAGGTAGGACTCTCTACTCTTGGCAAATAGTTTAGG
AGCATTGCTGACTCGGGAGACAAGAAATGGGTACTTGAAAATCGGTCGTC
GCCGTTAAGTAGGCAAGCTATTTTTAGAAGATAACCACTTGGTTTCCTCT
CGTACTTGCCTCTAAATCGCTGCTACCCCTCGGCGCACAATAGTAGAATC
CGAGAGCAGTAGGACTAGTACGCACCAATACATGCTTTTGCTACGTGCAT
AACCTCGCGCATCTCCACGTCTTTCAGCAAACCCAGGTTTCAACGGTCCT
GGTGGGCCACAGGGTTCACAATACCACGGTCCAGGCGGGCCACATGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9668:5876..6323+

>mRNA_H-paniculata_contig9668.17352.1 ID=mRNA_H-paniculata_contig9668.17352.1|Name=mRNA_H-paniculata_contig9668.17352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig9668:5876..6323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATACACTCACGAGGTTCTGCCGGCGGCCCGCAGTACGGTCTGGCTCCG
GGGCAGTACGTTGTCCCGGGCGGTGCCCCGCAAGATCTACGGAGTGGACC
ACAGTATGCTCCCGGAGCGATACACTCACGAGGTTCTGCCGGCGGCCCGC
AGTACGGTCTGGCTCCGGGGCAGTACGTTGTCCCGGGCGGTGCCCCGCAA
GATCTACGGAGTGGACCACAGTATGCTCCCGGAGCAAACCCAGGTTTCAA
CGGTCCTGGTGGGCCACAGGGTTCACAATACCACGGTCCAGGCGGGCCAC
ATGCAAACCCAGGTTTCAACGGTCCTGGTGGGCCACAGGGTTCACAATAC
CACGGTCCAGGCGGGCCACATG
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