mRNA_H-paniculata_contig9660.17349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9660.17349.1
Unique NamemRNA_H-paniculata_contig9660.17349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.130e-41
Identity = 77/101 (76.24%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:   31 EKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTFAHHVVSRRLKLTILFVDMEREKSAWPYRVLA---TSKGYGENERFVVLKREPNHFVLLTVV 324
            E  E +EGLP V++V ELRRFVRLEG+DVGHG CMWADT AHHVVSRRLK+TILFVDMEREK AWPYRVLA   T    GE+ERFVVLKREP+HFVLL  V
Sbjct:  337 EVEEENEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDGEDERFVVLKREPSHFVLLETV 437
[Close]
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.730e-39
Identity = 76/101 (75.25%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   31 EKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTFAHHVVSRRLKLTILFVDMEREKSAWPYRVLA---TSKGYGENERFVVLKREPNHFVLLTVV 324
            E  E +EGLP V++V ELRRFVRLEG+DVGHG CMWADT AHHVVSRRLK+TILFVDMEREK AWPYRVLA   T     E+ERFVVLKREP+HFVLL  V
Sbjct:  657 EVEEQNEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVLLETV 757
[Close]
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.480e-18
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   22 GKEEKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTFAHHVVSRRLKLTILFVDMEREKSAWPYRVLATSKGYGENERFVVLKRE--PNHFVLL 315
            G+  +  G+   P VQ+V +L+ ++R EG+  G G CMWAD  A  VV++RL+L ILFVDMER + AWPYR LA  +G  E   +VVLKRE    HFV +
Sbjct:  195 GRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEG--EPAHYVVLKREGPAGHFVYI 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS81_ECTSI2.130e-4176.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3H2_9PHAE3.730e-3975.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA53_9STRA2.480e-1849.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9660contigH-paniculata_contig9660:1646..7620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004490.1
Exons2
Model size457
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.1210291-CDS-H-paniculata_contig9660:1646..18981622931198.1210291-CDS-H-paniculata_contig9660:1646..1898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9660 1647..1898 -
1691481634.4287498-CDS-H-paniculata_contig9660:1646..18981691481634.4287498-CDS-H-paniculata_contig9660:1646..1898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9660 1647..1898 -
1622931198.1455212-CDS-H-paniculata_contig9660:7416..76201622931198.1455212-CDS-H-paniculata_contig9660:7416..7620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9660 7417..7620 -
1691481634.440678-CDS-H-paniculata_contig9660:7416..76201691481634.440678-CDS-H-paniculata_contig9660:7416..7620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9660 7417..7620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9660.17349.1prot_H-paniculata_contig9660.17349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9660 1647..7620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9660.17349.1

>prot_H-paniculata_contig9660.17349.1 ID=prot_H-paniculata_contig9660.17349.1|Name=mRNA_H-paniculata_contig9660.17349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
GAAEEGEGKEEKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTF
AHHVVSRRLKLTILFVDMEREKSAWPYRVLATSKGYGENERFVVLKREPN
HFVLLTVVVPARPPQTAGMITGKKLGSGGDEDGRERSSGDAVSVPAAAIA
MG
back to top

mRNA from alignment at H-paniculata_contig9660:1646..7620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9660.17349.1 ID=mRNA_H-paniculata_contig9660.17349.1|Name=mRNA_H-paniculata_contig9660.17349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5975bp|location=Sequence derived from alignment at H-paniculata_contig9660:1646..7620- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCAGCAGAGGAGGGGGAAGGGAAAGAGGAGAAGGTGGAGGGTGACGA
AGGGCTGCCCTTCGTGCAGTCTGTGGGTGAACTCCGTCGGTTTGTGAGGC
TAGAGGGGGCCGACGTGGGGCACGGCAGGTGCATGTGGGCGGACACGTTC
GCTCACCACGTAGTGTCGAGACGGTTGAAGCTCACCATCTTGTTTGTCGA
TATGGTGAGTGTGGGTTATATGTGTGCAGGTGTGTATGTGCTGCTTTATG
TTGTTGTGTGTTGTGTAGATATGAAGGTGTGTCGTAAAAGGGGCGTTTAT
TTCAACCCTTCAAAGTACAAAAAAGTTGTGTAATCGCGGCAAAAATTGTG
ATGGCTCTGCACGAGCCAACACGCCGAAAGAGGGGCTGATATCCGGCAGG
TGCATAGTAGTCTGCACCCAACATACCACTGAAGCGTTGAATACCCCCCT
ACTCTATTTTGCACCCTTTTTTTTATGGGAATAAAAAAATAATGTATTTG
TGAAGAAATATTCCCTGATGAACCTAGAATTTTAACATGTACACATTATA
TATGTCATTGCCATTAAAATCTACCAAAAGGTTGGCGGTACATACGACAC
CCTCGTCAACAGTTGTCACCAATCGCGACTACCGTTGTCCCTAGTCACTG
GAGAGAGCGCGATCATTAACATTTTTTGGTGGTAACCTCGCCTTGCTGAC
CATATATATAGTTGGCACCGGGAACGTGACACATCACAGTACGGTAAAAT
AGTCGCCGAGAGAGCAGTGTTGTTTTGTCTGTCTACCATTGAGAAGTTAA
TCCGAAAAATATGTTTTTAATGATGAACTCAATGAGAGATCGACCCTCTT
GTCTCTGTGTGTGTCTGTGTGTGTATTTGTTTGGTCACATATTTTACTTG
TTGTTTCCCGTCAAACTTGGCCACGGAATGAATGCTACCGGATAAGGGTG
ATAGGTGATGCTCGTGTATCGATATTTATTCCGTATGTATGAATGTCACC
TAGGTTTTCAAACGAGAGCTTAGGCTCTTGTTCGTCTATTTATCTACCTA
TCCATCTATCTAGATCTCGATGCTCCTCGTTTTATCTCGCGTTTCGACAG
TTGTCGATAACAGGTGCTATACGTGTGTATGTGTGTATGTGTGCACACGT
TCGTATCTGTTATATTTTATGTACGTATGTACATAGATGTAGGTGACTTG
TCTACTCTTTTTTTGAGAAACTCATAAATTCACATGGTCACCCTCTTTGC
CCGCAGCAACTAATCAATCGGCTTGGCCCTGATTAGAGCTTTGGCGACTA
CAGTACATCGTTGGCTCTTTTTCCAATCGACTTGGTCTTGGTTGCAACAA
TCAATCCCCATCCATGGTTGTCGGACATTGTGGCGTTTATATTTAACCCC
TGTACCGCCAGGGCCCAAAAAAGAACAATAAAGGCACCTGACAGTCCCGC
GGCGAAACAGCCACGAAAAGGGGGGGGATTTCTTTTGACGAGGGAGGAAG
GGCGGCCTCCGACCTCGTAGTGCTGGAGTACGGTAGCGGATTGTACACGA
AATATCTAAGCTCATGCCAATTGTGCACGTTTGTTCGCCCGACAGTAGCC
AATCAAAAACGTGGCGTCTCCTATACATTAATCAAGTTGTTTTGGGGTCA
CAGAATACCTACACAATGCTTTCGGGGGTTTAGGAAGATCGAGCAAAACG
TGCAGTCTTGGTCATTTGATTTTTGGGCTGTTGTATTTTGTGGGGGGCAA
AGATGGGTATCGTGTTGACAGCGAGGACGAGAGTAATAGCAGCGCATGGT
ATACCTGAGAACCTTGACACCGTGGCTGCAGCCAATGGTTTCAACAATGA
AATAGACATAGTTCAATTGTGCGATAAATTTTTCTCCTCCCGGACAAATA
CGAATTCAAGACACGAATAAATACGAGAAATTTGGAATGAATACAGAATC
TGTTTGAGTTGTGGAAGATGTTCATGTGACGCGAATAATATGCAGTGTAC
TCGATATACCATGGAGCATCGAAAACCTCGGGCAGATGAAGTATTCAATC
TGTACAGTACCATCCTGAAAATAAACAGAATGTGCATGTGTGACTGTTCG
CCGGGTATACGACCACCTGGTGACCATCTGTAAAGTGACCATTCAGAGAC
TTGTAAACGAATAAATACGTGTTTACCCAAGGCAAAATAATGATAGTTTG
AGATAGTTGCGAATGTTCCGTATTTGTCTGGGGGGTGAAATTGTTCTGCT
GTTGCTGTCTGCACTATTTGCGGGCGTCGGCACAATGCCGCGTGATAGCC
ATCGTGGTGGTTTTGATGAAATGTCCAGGCGTGCGGCTTTGTGCAGCGAA
TATCCCCTGTGCAGTCAGTCAGTCAGTCAGTTACTCACGATGTGAATTGT
GCTTCACGTTTCGATCAAGTAAGTGCTGCTGTCGTGGAACGCAAGAACCG
TGCCACTTCTTGCCTGTGTTTTGTCTGCAATAATTTCAGCACCGTGTTTA
TTGTCTGTAGATGTCCCTATCCCTGTACTCATGTCGTGGGCGTTTGTCAC
GAAATAAGTCCGAAGGGGTTTCGGCCTGTTTTCCGAGCAGATGTCGTATA
TGTATCGTACACGGCCCGGCCATAAAGGTTAAACTAGTGGACAGGTTACG
GCTACCGCAGTGACGGCGACTACGTCGACGATGTCGTGTTACCTCTAAAT
AGTCGACGCCCACGGACTCGCTGCACTCGTAGTGGCTCCCTTACGCGTAC
TCGCATGAAGTCACAATGAAGAGCACCAACTTCACAAAATTCGATAGAAT
GTCCCGTGACTGCAGCAACGCAACGGGCAACGTTCAACATCTACACACAG
AACCGCTACTATAGACTCTCAGAGGTACCCACATGGGAGATGTAGATGCG
GAAAATTCATCTGCTCGGAGATATCGTGGACATGGAAATGTCCAACTGTG
TTGAATGGGGAGGTGTATTCACCAACGGCTTTTAGCAGGTCAAGTGTTCA
GGTTTACGCCATGCCGACAACTTCTCATTACACCCTCTCCAGCGCCAGGG
TGTCTCTCCCAGACCATGCCCTGCTGCAGCACTGCCGTACCTACAAACGC
TGTGCCTACTCCAGTATGTATGCTGCGTGTGGATGACATCCTGCATGACA
GCCTCTGTGACACAAGTGCAAAATATGGAAACACGGCGTATGAAAAACCT
TCACTGGACTCCTTGTTCATGGTTTTAAGAATGGCAGTTGTGTTGTTCAG
GTTGACGCCCTGCCCTATCTTCTCTTCGCGCCGCCCTCTTGGGCGCCAAG
TTGTCTCTCCCACACTATGCCCTGGGCAGCACCCACATACGTACAAATGC
GCTATCCGTACTCCAATGTGTGCGCTACGTGTGGACGACAATCTCTTATG
ACAGCCTCTGACAGAAGTGCATGGCAAAATGGAAAAGTGTTTACTGGACC
GACTGTTGCGTTGTCCAGGTTGAAGCCCTGCCCAACCTTCTCTTCACACC
CTCTTCAGCGTCAGGCTGCCTCTGCTGCCTCTGCTGCCTCTACCACCCTA
TGCCCTGGTTTACATGTCCGCACGTACGGACGCGCTGTCCCCACTCCTGG
GTGGATGCTGCCAGCCTCTATGACAACCGCCGTGATGAAGGAGTGATGAG
CAAAATTCGGAAAACGTTTACTGTATTGTCTTTTTATCGATTCTCTGGCA
TACACTCTCTCTATCTCTTGGTATAAAGACGTCTGCCCATGGGCATGCGT
CTCTGTTGATGTGCCCTGCTGTGTGTCCCCTAGTGCCTACCGTTGTTCCT
GTGTGCAGAGCTGTCAGTCTGTGCTGTGCTGTGCTGTGGATGAACGTGAT
GGTCATGTAGAGCTGACTGCTTAGACATTTCTTTTTTATTTCTAAACTTT
CTTGAGCTGAGAATATTTATTTCGGTTATTTGAAGATGGAAAATCGTAGT
TTAGATTCTTCGTTTTGAAGTTACTTGACTTCGGAGTCGAAAGATAAGTC
CGAAACAACCCATTACCTTAGCCTATTACATGATAAGAATACGCACAATT
TGGATAACATTCCTTGCTTTAGTTATGGTCGTCACCTCATGTATTCACGC
ACTACAGATCATATCGCCCCTTATGTATAAGAATTTAGAGTTATTTTCCT
ATATATATATGGAACTCTGGTACATGACCAAGATTCCAGGCAAGGGTCCA
TTTTTTCTGTTGTTGTCGTGAAAACAGCCGATATTATACTGTACCGTAGA
GGCCTAGCAAGCATACATCTCAAGCTGCAAAATCGGGAGAAGGTACTCGA
TACGCGGCTATCTCCCTCTCTCGTGCACCTCTCAAGAAATCTTCTTCATA
GTAATTTCTCGGGGAGAGATGAGCTTTGGAAACGAAAGTAATGTGAGTTG
TACTGAGTATATATATAGAGAGAGAGTTAGATGGATAGATTGTATCGTTC
GGAGATTTTACCTTCGGCATGCGAGAGTAGTTCGGAGGTCGACCAATGAG
AAGCCAGTATGTACAAGAAGGCACGATTTTTTGCGCGTGGCGGTGGAGGT
GGAGATTACAAAGAAAACTAAAGACTAGCCACGGTATATAGGGAAGTTCA
TGTACTGGTGCAACTTGTCGGCTTTCGTTTCAGTGCCCATCTAGCTAGCA
CCCTGCCACTATGACCTCGTAGTCCTGCTGCTGTTAGCACTAGTCAATCA
TAATGGGTCATCCGGTCGTAAAATATGTGAATGGTAGTGGGTGTTTTTCA
CCATATTTTAGATGCAGTAATCTGGTTTTTGGCAGCCGCATTGTTATTCT
TTTTGCGGTGAAAGCAAGTGCTGTCAAATCGACTTGGCAAGGGGTTCTGA
GAAGATGGTGAAGTTGAAGGTAGAGTAGCACCATCCCGCGGCTCGTTCCC
CTGAGCGAGTCAGTTTTATCGAGGGAATGGTTGATGGACTGCTTCGAGAA
CACGTCACGAATTAGAATAAGCAATAAAAGGGATGAGTGTTTGCTGTCGC
AATTTCCAGCGGCGATCCAACCTTGTTTTTGTTTTTTTAGGGGGGGGGAT
TAATTCTAACCCCGCTGAGAGCTAAAGGGCCCAGCCTTCACTGGTTATAG
TCCGTGCAAAATCAAAACCAATAGCCATCCACGCAGAGACTTGAGACTTG
CATCGAGCAGGAGAGAAGGCACACCCATTTGTATTATGTGTGTGCGTGTG
TGTGTGTCTGTGTGGACAACCTCAAGAACGAAAATTGACTGGATTTTCTG
CTGCTGTTACTCCTCGTCACTGGGTAGAAGTTTTGATTTTGAGTACATAC
ACATAGCTGCGCGTACAAGCTACCTGCCCTCAGTATTACCGATACATATA
CAGTACTAAAAAAACACAATTTAAAACAAGAAGGCAGATTTCGCCTGGCG
GGTTAATTGCCTCACTCGGGTACTGACTATCCCCTCAAGTCCGATACGTT
GTGTTGTGGGTATGAAAGACGGAGATTCAAGTCCCCTTTTTTGCCTAGGC
TAGAAAGTGTGAAGGTTTAAATGCCGTGGGTTGCAATTCCATTAATAATT
GTTCCATGTCGTTATCTAGTCTTCAACATCTCAGTTGGTGGAGCAAGTGG
CTGTTAACGACGGGGTAATTGGTTCTAGCCCAACCTGTTTTGTCTATTCC
ACTTTTGACTCGTATCTTAATCTATGATAAGCCCCGCTCCCCCCCCCCTG
TCATACCATCTCGCTCCCACAGGAAAGAGAGAAAAGTGCGTGGCCGTATC
GGGTTCTGGCAACCAGCAAGGGCTACGGCGAGAATGAGCGCTTCGTTGTG
CTCAAGAGGGAACCCAACCACTTCGTGCTGCTCACGGTTGTGGTACCCGC
CCGGCCGCCTCAAACCGCAGGAATGATTACAGGGAAAAAGTTAGGGAGCG
GAGGCGATGAAGATGGGCGAGAGCGCAGCAGCGGTGACGCCGTCTCGGTA
CCAGCGGCAGCGATAGCGATGGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9660:1646..7620-

>mRNA_H-paniculata_contig9660.17349.1 ID=mRNA_H-paniculata_contig9660.17349.1|Name=mRNA_H-paniculata_contig9660.17349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig9660:1646..7620- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCAGCAGAGGAGGGGGAAGGGAAAGAGGAGAAGGTGGAGGGTGACGA
AGGGCTGCCCTTCGTGCAGTCTGTGGGTGAACTCCGTCGGTTTGTGAGGC
TAGAGGGGGCCGACGTGGGGCACGGCAGGTGCATGTGGGCGGACACGTTC
GCTCACCACGTAGTGTCGAGACGGTTGAAGCTCACCATCTTGTTTGTCGA
TATGGGGGCAGCAGAGGAGGGGGAAGGGAAAGAGGAGAAGGTGGAGGGTG
ACGAAGGGCTGCCCTTCGTGCAGTCTGTGGGTGAACTCCGTCGGTTTGTG
AGGCTAGAGGGGGCCGACGTGGGGCACGGCAGGTGCATGTGGGCGGACAC
GTTCGCTCACCACGTAGTGTCGAGACGGTTGAAGCTCACCATCTTGTTTG
TCGATATGGAAAGAGAGAAAAGTGCGTGGCCGTATCGGGTTCTGGCAACC
AGCAAGGGCTACGGCGAGAATGAGCGCTTCGTTGTGCTCAAGAGGGAACC
CAACCACTTCGTGCTGCTCACGGTTGTGGTACCCGCCCGGCCGCCTCAAA
CCGCAGGAATGATTACAGGGAAAAAGTTAGGGAGCGGAGGCGATGAAGAT
GGGCGAGAGCGCAGCAGCGGTGACGCCGTCTCGGTACCAGCGGCAGCGAT
AGCGATGGGGGAAAGAGAGAAAAGTGCGTGGCCGTATCGGGTTCTGGCAA
CCAGCAAGGGCTACGGCGAGAATGAGCGCTTCGTTGTGCTCAAGAGGGAA
CCCAACCACTTCGTGCTGCTCACGGTTGTGGTACCCGCCCGGCCGCCTCA
AACCGCAGGAATGATTACAGGGAAAAAGTTAGGGAGCGGAGGCGATGAAG
ATGGGCGAGAGCGCAGCAGCGGTGACGCCGTCTCGGTACCAGCGGCAGCG
ATAGCGATGGGG
back to top