mRNA_H-paniculata_contig9654.17346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9654.17346.1
Unique NamemRNA_H-paniculata_contig9654.17346.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.530e-8
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
            MILFLHGN DLIP++   LTE  A   IPGR  NPV  L+ L+G F  +
Sbjct:   52 MILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVEGLEQLDGAFAPV 100
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.180e-7
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
            MILFLHGN DLIP++   LTE  A    PGR  NPV  L+ L+G F  +
Sbjct:   52 MILFLHGNLDLIPEDITTLTEAVARTMFPGRLANPVEGLKQLDGAFTPV 100
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-6
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
            MILFLHGN DLIP++   LTE  A   IPGR  NPV  L+ L+G F  +
Sbjct:  436 MILFLHGNLDLIPEDITKLTEAVARTKIPGRLANPVEGLEQLDGAFAPV 484
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.210e-6
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
            MI+FLHGN DLIP++   LTE  A   IPGR  NPV  L+ L+G F  +
Sbjct:  663 MIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLDGVFAPV 711
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.520e-5
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
            M+LFLHGN DLIP+  P L ++     IPGR  NP+ +L  L+G    +
Sbjct:  603 MVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGLDGTLGLV 651
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 4.240e-5
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGA----IPGRRPNPVSDLQHLNGQFHTI 147
            MILFLHGN DLIPD+ PAL  D    A    +PGR  NP   L+ ++G F  +
Sbjct:   70 MILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPV 122
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 7.320e-5
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGA---IPGRRPNPVSDLQHLNGQFHTILDDGDGEDE 174
            M+LFLHGN DL+P+  P L  D   G    IPGR  NP+ +L  L+G+F  +    D E E
Sbjct:  705 MVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDESE 765
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BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.110e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
            MI+FLHGN +LIP++   LTE  A    PGR  NPV  L+ L+G F  +
Sbjct:  199 MIMFLHGNLNLIPEDITKLTEVVARTKFPGRLANPVDGLEPLDGAFAPV 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KCJ3_9PHAE6.530e-855.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE5.180e-753.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.230e-655.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE3.210e-653.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.520e-544.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE4.240e-549.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI7.320e-544.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE8.110e-548.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9654contigH-paniculata_contig9654:7565..7839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size275
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.7815578-CDS-H-paniculata_contig9654:7564..77591622931197.7815578-CDS-H-paniculata_contig9654:7564..7759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9654 7565..7759 +
1691481634.2596965-CDS-H-paniculata_contig9654:7564..77591691481634.2596965-CDS-H-paniculata_contig9654:7564..7759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9654 7565..7759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.793823-UTR-H-paniculata_contig9654:7759..78391622931197.793823-UTR-H-paniculata_contig9654:7759..7839Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9654 7760..7839 +
1691481634.2741385-UTR-H-paniculata_contig9654:7759..78391691481634.2741385-UTR-H-paniculata_contig9654:7759..7839Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9654 7760..7839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9654.17346.1prot_H-paniculata_contig9654.17346.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9654 7565..7759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9654.17346.1

>prot_H-paniculata_contig9654.17346.1 ID=prot_H-paniculata_contig9654.17346.1|Name=mRNA_H-paniculata_contig9654.17346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTIL
DDGDGEDEHILDIS*
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mRNA from alignment at H-paniculata_contig9654:7565..7839+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9654.17346.1 ID=mRNA_H-paniculata_contig9654.17346.1|Name=mRNA_H-paniculata_contig9654.17346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=275bp|location=Sequence derived from alignment at H-paniculata_contig9654:7565..7839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCTGTTCTTGCACGGGAACAAGGACCTCATTCCTGACAACGAGCC
TGCGCTTACCGAGGATCAAGCGTTGGGTGCTATTCCTGGGCGGCGGCCAA
ACCCGGTCTCTGATTTACAACATCTCAACGGGCAGTTCCACACGATATTG
GACGACGGGGACGGAGAGGATGAGCACATTTTGGACATTTCATAGTTCAC
GGAGCATGAACCTAGTCTATAGTTTGTAGTTTTGTTGGGTCGGGTTACGG
AGTCTACCTCGACAGTATCCTTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig9654:7565..7839+

>mRNA_H-paniculata_contig9654.17346.1 ID=mRNA_H-paniculata_contig9654.17346.1|Name=mRNA_H-paniculata_contig9654.17346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig9654:7565..7839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCTGTTCTTGCACGGGAACAAGGACCTCATTCCTGACAACGAGCC
TGCGCTTACCGAGGATCAAGCGTTGGGTGCTATTCCTGGGCGGCGGCCAA
ACCCGGTCTCTGATTTACAACATCTCAACGGGCAGTTCCACACGATATTG
GACGACGGGGACGGAGAGGATGAGCACATTTTGGACATTTCATAGATGAT
CCTGTTCTTGCACGGGAACAAGGACCTCATTCCTGACAACGAGCCTGCGC
TTACCGAGGATCAAGCGTTGGGTGCTATTCCTGGGCGGCGGCCAAACCCG
GTCTCTGATTTACAACATCTCAACGGGCAGTTCCACACGATATTGGACGA
CGGGGACGGAGAGGATGAGCACATTTTGGACATTTCATAG
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