mRNA_H-paniculata_contig9651.17343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9651.17343.1
Unique NamemRNA_H-paniculata_contig9651.17343.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9651.17343.1 vs. uniprot
Match: D7G7K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.010e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:  241 KLNSELLDQQLAAEAPMAEAGIPRMREMWSKELAKDEPNLDIKFQYALLLIKSRSQDLNREGMALLQG 444
            K+NSELLDQQL AEAP+AEA  PR+R+MW +E  KDEPNLDIKFQYAL LIK+RS D NREGM+LL+G
Sbjct:    4 KVNSELLDQQLKAEAPVAEASCPRLRDMWLQESNKDEPNLDIKFQYALTLIKTRSHDKNREGMSLLEG 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9651.17343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K7_ECTSI1.010e-2475.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9651contigH-paniculata_contig9651:1624..3027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7.9e-21
Seed eggNOG ortholog2880.D7G7K7
Preferred nameFIS1
KEGG koko:K11982,ko:K17969
KEGG Pathwayko04137,ko04139,map04137,map04139
Hectar predicted targeting categoryother localisation
GOsGO:0000266,GO:0000422,GO:0001101,GO:0001300,GO:0001666,GO:0001678,GO:0001836,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005779,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007154,GO:0007165,GO:0007204,GO:0007568,GO:0007569,GO:0008053,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0014823,GO:0014850,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016559,GO:0019222,GO:0019722,GO:0019725,GO:0019867,GO:0019932,GO:0022411,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030162,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031667,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032469,GO:0032471,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033500,GO:0033993,GO:0034284,GO:0034613,GO:0035556,GO:0035584,GO:0036293,GO:0042221,GO:0042579,GO:0042592,GO:0042593,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043653,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045184,GO:0045862,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051480,GO:0051560,GO:0051561,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060341,GO:0061024,GO:0061025,GO:0061726,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070482,GO:0070584,GO:0070585,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0072594,GO:0072655,GO:0080090,GO:0090087,GO:0090140,GO:0090141,GO:0090313,GO:0090314,GO:0090316,GO:0097190,GO:0097237,GO:0098573,GO:0098588,GO:0098771,GO:0098805,GO:1901214,GO:1901216,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1902617,GO:1903008,GO:1903533,GO:1903827,GO:1903829,GO:1904578,GO:1904579,GO:1904951,GO:1905395,GO:1905475,GO:1905477,GO:1990910,GO:2000116,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.mitochondrial fission
EggNOG OGsKOG3364@1,KOG3364@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_002050.1
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04121,ko04131
Exons2
Model size645
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9651.17343.1prot_H-paniculata_contig9651.17343.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9651 1819..2793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.194052-UTR-H-paniculata_contig9651:1623..18181622931197.194052-UTR-H-paniculata_contig9651:1623..1818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 1624..1818 -
1691481634.0807211-UTR-H-paniculata_contig9651:1623..18181691481634.0807211-UTR-H-paniculata_contig9651:1623..1818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 1624..1818 -
1622931197.3240533-UTR-H-paniculata_contig9651:2793..30271622931197.3240533-UTR-H-paniculata_contig9651:2793..3027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 2794..3027 -
1691481634.1160965-UTR-H-paniculata_contig9651:2793..30271691481634.1160965-UTR-H-paniculata_contig9651:2793..3027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 2794..3027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.2126496-CDS-H-paniculata_contig9651:1818..19591622931197.2126496-CDS-H-paniculata_contig9651:1818..1959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 1819..1959 -
1691481634.0944104-CDS-H-paniculata_contig9651:1818..19591691481634.0944104-CDS-H-paniculata_contig9651:1818..1959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 1819..1959 -
1622931197.232858-CDS-H-paniculata_contig9651:2718..27931622931197.232858-CDS-H-paniculata_contig9651:2718..2793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 2719..2793 -
1691481634.1053104-CDS-H-paniculata_contig9651:2718..27931691481634.1053104-CDS-H-paniculata_contig9651:2718..2793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 2719..2793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9651.17343.1

>prot_H-paniculata_contig9651.17343.1 ID=prot_H-paniculata_contig9651.17343.1|Name=mRNA_H-paniculata_contig9651.17343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MVKLNSELLDQQLAAEAPMAEAGIPRMREMWSKELAKDEPNLDIKFQYAL
LLIKSRSQDLNREGMALLQGS*
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mRNA from alignment at H-paniculata_contig9651:1624..3027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9651.17343.1 ID=mRNA_H-paniculata_contig9651.17343.1|Name=mRNA_H-paniculata_contig9651.17343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig9651:1624..3027- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACCCAACTGAGACATGTACGGAAGCGTTATTTATAAGGGGGCGGATA
TCTGTGTGTGATTTTAGCCATTATCCAAATATTGTGTTCGTTGTTCAAGT
CGTTTTCCAATATTACCAGTGTGGGAAAAATGATAAATTCGGCAAACGCA
AAACACCAGGCGGTGCCGACTTACTCGTAACCAGCAACGCATAGTAAAGT
ACCATTACTTTCATCTACTCCAAACTATAATATCATGGTGAAGCTTAACT
CTGAACTTTTGGATCAGCAGCTGGCTGCCGAGGCGCCCATGGCGGAAGCT
GGAATACCGGTAAGTAGTTCACGAGATGATGGTACAGACAATACAAGACA
ATACAGACAGCACTTGCAAGCTCTGGCCATTTCGATCCACAACTTGACGG
CCTTTGGAAGCGCCCAGTTGAAGACAGTATTAATATGATACCGCTGCAGC
ATGATAAAAAGCCTTGGGTTGGTTGGTGGTCGTGGTTATCGTGACTGGGT
CGATGTTCCAACTGGAATAAACATTCTAAAGATGCTGACCAATTCAGCTG
CAATGTGTTTCGTTGTGTGAGGAAGATGTTCTTCCACTTTCGGTTTTTTT
ATACACTTTGACGACTGGAGTTTCGAGGAACGTTGGGACCGGCTCGCCTC
TTCTGAAGCACCTATTTTCCTTATACATGCGTGTGTACCTGTCCGCCGTG
CCTAGCTTGTAGATAGATGCCTCCTACGCCAGTGACCGTCTCTCTGATAA
CTGTATACTGGTTGACCCAAATCGTGCACGGCAACTTGAGCAGCATGACC
TTTCATGGTATATCGGTATGCGGGTTCACAAACATGGGACATTATCCCGC
AGTCGAACGTTTAATGTAGAGGACATGCATGGAAGATATGACAAATAAAC
GTCTACTTATGAAAGATATGCTTGTCCCGAGTCTGAGCCTTTTCAGGATT
GCCATACTTGTCTGTCAGGGGAAGACTCCAAACACTGCCGACAGAAATGA
GTCTGGTATTAGCAGCTCCTCATCCCCCTCCCCGCTGCCAACGGACTGTT
GCCCCGGCATTTGCCCAGAGAATGCGCGAAATGTGGTCGAAGGAGTTGGC
CAAAGATGAGCCCAACCTCGACATCAAGTTCCAGTACGCGCTCCTGCTCA
TCAAGAGTCGATCCCAAGATCTTAATCGAGAGGGTATGGCTCTCTTGCAA
GGTTCGTAAATGCCCTTTAATGCAGGTGTTTCCTACCGTATAGTACGCAT
AGCACAAGCTGGGCCAGCGAAGAAGCTCATGTTCTGTCAGAAAGCCATTA
CTCGGACCCTGCGTCATGTTATACCGAGCTGAGGATATTATATTAAAGCG
CTGGTCAAGGCGGTGATGCAGAGCTACACCACGTTCTGCATGGTCAAGTT
CTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig9651:1624..3027-

>mRNA_H-paniculata_contig9651.17343.1 ID=mRNA_H-paniculata_contig9651.17343.1|Name=mRNA_H-paniculata_contig9651.17343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig9651:1624..3027- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGCTTAACTCTGAACTTTTGGATCAGCAGCTGGCTGCCGAGGC
GCCCATGGCGGAAGCTGGAATACCGATGGTGAAGCTTAACTCTGAACTTT
TGGATCAGCAGCTGGCTGCCGAGGCGCCCATGGCGGAAGCTGGAATACCG
AGAATGCGCGAAATGTGGTCGAAGGAGTTGGCCAAAGATGAGCCCAACCT
CGACATCAAGTTCCAGTACGCGCTCCTGCTCATCAAGAGTCGATCCCAAG
ATCTTAATCGAGAGGGTATGGCTCTCTTGCAAGGTTCGTAAAGAATGCGC
GAAATGTGGTCGAAGGAGTTGGCCAAAGATGAGCCCAACCTCGACATCAA
GTTCCAGTACGCGCTCCTGCTCATCAAGAGTCGATCCCAAGATCTTAATC
GAGAGGGTATGGCTCTCTTGCAAGGTTCGTAA
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