mRNA_H-paniculata_contig9648.17338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9648.17338.1
Unique NamemRNA_H-paniculata_contig9648.17338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: D8LTU1_ECTSI (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 5.920e-44
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSPAPWLDGQASGTMMDPATAQVS 318
            GASTAYHL+LRGVK +V+ERS VAAAASGKAGGFLAGGWGSGPTV MHE+SF+MHE LAE LGVTSYRKIPTL  +   R G SPA WLDG+ASG++MD  TAQV+
Sbjct:   21 GASTAYHLALRGVKPIVIERSNVAAAASGKAGGFLAGGWGSGPTVPMHEISFDMHEKLAETLGVTSYRKIPTLSVNG-GRGGSSPAAWLDGKASGSLMDSDTAQVT 125          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A835ZIK8_9STRA (FAD dependent oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.040e-33
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    4 ASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSPAPWLDGQASGTMMDPATAQVS 318
            AS AYHL+ +GVK +VLERS+VAAAASGK+GGFLA  WGSGP V++H  SF +HE LA+EL V S+RK+PTL      RKGK+ A WLDG+AS ++MD  TAQV+
Sbjct:   21 ASIAYHLTQKGVKPIVLERSEVAAAASGKSGGFLARDWGSGPAVQLHTASFALHEKLAKELTVESFRKLPTLSVKVGGRKGKNAASWLDGKASSSLMDDGTAQVT 125          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A7S0QTC4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTC4_9CRYP)

HSP 1 Score: 122 bits (307), Expect = 4.650e-33
Identity = 70/110 (63.64%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGP-TVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSF--SRKGKSPAPWLDGQ-ASGTMMDPATAQVS 318
            GAS AYHLS RGV+ LV+ERSKV AAASGKAGGFLAGGWG G  T ++H VSF MHE LA+ELG+ S+RKI TL  +      KGK P  WLDGQ A  ++MD  TAQV+
Sbjct:   80 GASIAYHLSKRGVQPLVVERSKVGAAASGKAGGFLAGGWGDGSVTQQLHRVSFRMHEELAKELGIKSFRKIETLSVTGGRGGAKGKMPVSWLDGQIAKASLMDKWTAQVT 189          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A0G4HCU1_9ALVE (DAO domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HCU1_9ALVE)

HSP 1 Score: 117 bits (294), Expect = 4.350e-29
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKAL---VLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSPAPWLDGQASGTMMDPATAQVS 318
            G STAYHL+ +G  +L   V+ERS VAAAASGKAGGFLA  WGSGPT  +H++SF MH  LA+EL + S+R I TL  S   RKGK+ APWL+G+AS T MD  TAQV+
Sbjct:   67 GVSTAYHLAKKGGNSLDITVVERSGVAAAASGKAGGFLARDWGSGPTDALHKISFRMHAELAKELNIESFRPIQTLSVSG-GRKGKNAAPWLNGKASSTHMDSNTAQVT 174          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A1Q9D1J6_SYMMI (Putative oxidoreductase C1F5.03c n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D1J6_SYMMI)

HSP 1 Score: 107 bits (267), Expect = 3.400e-27
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSP--APWLDGQ-ASGTMMDPATAQVS 318
            GA+ AY L+ RGVK +V+ER KVAAAASGK GGFLA  WG   T ++H VSF +HE LAE LG+ SYRK+P L A+   R  ++    PWLDG+ A   +MDP  AQ S
Sbjct:   64 GAALAYFLTRRGVKPVVVERDKVAAAASGKGGGFLARDWGDSITRKLHTVSFKLHEELAETLGIESYRKLPVLSAAPGPRSDRTSDMCPWLDGEVADARVMDPNGAQAS 172          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A7S1DMN2_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMN2_HEMAN)

HSP 1 Score: 108 bits (269), Expect = 7.500e-27
Identity = 65/108 (60.19%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   25 SLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSR---------KGKSPAPWLDGQASGT-MMDPATAQVS 318
            S RGV   V+ERSKVAAAASGKAGGFLA GWGSGPT ++HEVSF++HE LAEEL +  YRK+PTL  S   R         KG+ P  WLDGQ S   MMD  TAQ +
Sbjct:  102 SKRGVVPTVVERSKVAAAASGKAGGFLARGWGSGPTRQLHEVSFDLHETLAEELKLEGYRKLPTLSVSGGKRGAGVDKSIEKGEVPQ-WLDGQVSSARMMDTDTAQTT 208          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A7S3AF44_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AF44_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 1.760e-26
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSP--APWLDGQA--SGTMMDPATAQVS 318
            GA+ AY+L+LRGVK L+++R  VAAAASGK GGFLA  WGSGPTV +H+VSF +HE LA+EL + SYRKIP L  +   R  ++    PWLDG+   S  M D   AQV+
Sbjct:   18 GAALAYYLTLRGVKPLIVDRHSVAAAASGKGGGFLARDWGSGPTVALHKVSFALHEELAKELDIQSYRKIPVLSVAPGKRTKRTTDLCPWLDGEIRDSSMMDDEGGAQVA 127          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A7S1J696_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J696_9EUGL)

HSP 1 Score: 110 bits (274), Expect = 4.540e-26
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSPA-PWLDGQ-ASGTMMDPATAQVS 318
            GAS AY+L+L+G K  V+ER +VAAAA GK GGFLAGGWG G T ++H  SF +HE LA EL + SYRKIPT+   + SR   S    WLDG  A+  +MDP TAQV+
Sbjct:  111 GASIAYYLTLKGFKPTVVERKEVAAAAGGKGGGFLAGGWGYGVTEQLHTKSFELHEELARELDLKSYRKIPTISVCAGSRPNPSKVCSWLDGNIATSRLMDPNTAQVT 218          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A7S3ZGY1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZGY1_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 3.500e-25
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   49 VLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSPAP---WLDGQASGT-MMDPATAQVS 318
            V+ER KVA AASGKAGGFLA GWGSGPT  +H+V F +H+ LA+EL + S+R +PTL  S+  RK K  A    WLDG  SG  MMDP TAQV+
Sbjct:    1 VVERWKVAGAASGKAGGFLAKGWGSGPTEALHQVGFELHKKLAQELKMKSFRHLPTLNVSTGGRKMKGAASKCKWLDGHVSGCKMMDPNTAQVT 94          
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Match: A0A813DZI3_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DZI3_POLGL)

HSP 1 Score: 104 bits (259), Expect = 5.640e-25
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEVSFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSP--APWLDGQASGTMM 294
            GA+ AY L+LRGVK +V+ER KVAAAASGK GGFLA  WG   T ++H VSF +HE LAE LG+ SYR++P L  S   R  ++    PWLDG+ S T +
Sbjct:   83 GAALAYFLTLRGVKPVVVEREKVAAAASGKGGGFLARDWGDAITRQLHRVSFKLHEELAETLGIQSYRRLPVLSVSPGQRSSRTRDICPWLDGEISDTQI 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9648.17338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU1_ECTSI5.920e-4476.42DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZIK8_9STRA1.040e-3362.86FAD dependent oxidoreductase n=1 Tax=Tribonema min... [more]
A0A7S0QTC4_9CRYP4.650e-3363.64Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0G4HCU1_9ALVE4.350e-2960.55DAO domain-containing protein n=1 Tax=Chromera vel... [more]
A0A1Q9D1J6_SYMMI3.400e-2755.05Putative oxidoreductase C1F5.03c n=1 Tax=Symbiodin... [more]
A0A7S1DMN2_HEMAN7.500e-2760.19Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S3AF44_9EUKA1.760e-2655.45Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1J696_9EUGL4.540e-2656.48Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3ZGY1_9EUKA3.500e-2559.57Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A813DZI3_POLGL5.640e-2555.00Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9648contigH-paniculata_contig9648:3897..4818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3.5e-36
Seed eggNOG ortholog2880.D8LTU1
KEGG koko:K01228
KEGG ReactionR05979
KEGG Pathwayko00510,ko01100,ko04141,map00510,map01100,map04141
KEGG ModuleM00073
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0006810,GO:0007049,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016192,GO:0016197,GO:0016482,GO:0016491,GO:0022414,GO:0031410,GO:0031982,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0055114,GO:0097708
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsCOG0665@1,KOG2852@2759
EC3.2.1.106
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.478643-CDS-H-paniculata_contig9648:3896..41311622931196.478643-CDS-H-paniculata_contig9648:3896..4131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9648 3897..4131 +
1691481633.7705145-CDS-H-paniculata_contig9648:3896..41311691481633.7705145-CDS-H-paniculata_contig9648:3896..4131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9648 3897..4131 +
1622931196.4953542-CDS-H-paniculata_contig9648:4726..48181622931196.4953542-CDS-H-paniculata_contig9648:4726..4818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9648 4727..4818 +
1691481633.785575-CDS-H-paniculata_contig9648:4726..48181691481633.785575-CDS-H-paniculata_contig9648:4726..4818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9648 4727..4818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9648.17338.1prot_H-paniculata_contig9648.17338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9648 3897..4818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9648.17338.1

>prot_H-paniculata_contig9648.17338.1 ID=prot_H-paniculata_contig9648.17338.1|Name=mRNA_H-paniculata_contig9648.17338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
GASTAYHLSLRGVKALVLERSKVAAAASGKAGGFLAGGWGSGPTVRMHEV
SFNMHEHLAEELGVTSYRKIPTLQASSFSRKGKSPAPWLDGQASGTMMDP
ATAQVSKT*
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mRNA from alignment at H-paniculata_contig9648:3897..4818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9648.17338.1 ID=mRNA_H-paniculata_contig9648.17338.1|Name=mRNA_H-paniculata_contig9648.17338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=922bp|location=Sequence derived from alignment at H-paniculata_contig9648:3897..4818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCCAGCACAGCGTATCACTTGTCTCTGCGGGGCGTCAAAGCGTTGGT TCTTGAGCGCAGCAAAGTAGCGGCTGCAGCTAGCGGCAAGGCGGGTGGGT TTCTTGCGGGGGGCTGGGGCAGCGGCCCGACTGTGAGGATGCACGAAGTG AGCTTTAACATGCACGAGCATTTGGCGGAGGAACTTGGAGTGACGTCATA TCGGAAGATACCGACCTTGCAGGCGAGCTCATTCTGTTGGATTGCCTGTG TTGCTGTGCTACTTTTACTGATTTTGCTCTGTTTAGCTTTTTTGTTGTTG CCCTTGGTATATTTCCCGAGCTCAGTACGGGATCGCTCGACGGGGCGGGA CAGGATGAAATTTGTATCAAGTATACGTCAAATTAGTAGTATTTGACCCA TAACTTTATTGATTGTCATTAACATAACACTTGAATTTTTATCCCTCACA TTTCACATATTAATTACACCGTACTCGCTACCATCAATATATAGTATGTT ATGTAAATCACCATATTCACGAACGACTTGTAAACAGTACGTCACACACA CAGGTAAAACAACAAACAGGTGAGGCCCCATTACAAATACGCTTCTATGA GTTTCTTTTTTTTGTCGGATCCGGATAGACAATGACATGACTTACATGAA GGCTTACTCGCAATTCTAATGATAATCCTGTTTATCAGGGGCGATTTTAT TTTGATTTCTTCACCGACCTGTTCATTTCCCGACAAAAAAATTTGAAACA ACTCAAGCTTGACCACATCGGTTTTCGATTTTGAATATATTCCTTTGTTT TGTGCCGCGGGACTCGGCAGGTCAGCGGAGCGCGCAAGGGCAAGTCACCG GCGCCGTGGCTAGATGGCCAGGCCTCGGGTACCATGATGGACCCTGCTAC CGCCCAGGTAAGTAAGACATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9648:3897..4818+

>mRNA_H-paniculata_contig9648.17338.1 ID=mRNA_H-paniculata_contig9648.17338.1|Name=mRNA_H-paniculata_contig9648.17338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig9648:3897..4818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCCAGCACAGCGTATCACTTGTCTCTGCGGGGCGTCAAAGCGTTGGT
TCTTGAGCGCAGCAAAGTAGCGGCTGCAGCTAGCGGCAAGGCGGGTGGGT
TTCTTGCGGGGGGCTGGGGCAGCGGCCCGACTGTGAGGATGCACGAAGTG
AGCTTTAACATGCACGAGCATTTGGCGGAGGAACTTGGAGTGACGTCATA
TCGGAAGATACCGACCTTGCAGGCGAGCTCATTCTGGTGCCAGCACAGCG
TATCACTTGTCTCTGCGGGGCGTCAAAGCGTTGGTTCTTGAGCGCAGCAA
AGTAGCGGCTGCAGCTAGCGGCAAGGCGGGTGGGTTTCTTGCGGGGGGCT
GGGGCAGCGGCCCGACTGTGAGGATGCACGAAGTGAGCTTTAACATGCAC
GAGCATTTGGCGGAGGAACTTGGAGTGACGTCATATCGGAAGATACCGAC
CTTGCAGGCGAGCTCATTCTCGCGCAAGGGCAAGTCACCGGCGCCGTGGC
TAGATGGCCAGGCCTCGGGTACCATGATGGACCCTGCTACCGCCCAGGTA
AGTAAGACATAGCGCGCAAGGGCAAGTCACCGGCGCCGTGGCTAGATGGC
CAGGCCTCGGGTACCATGATGGACCCTGCTACCGCCCAGGTAAGTAAGAC
ATAG
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