mRNA_H-paniculata_contig9636.17331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9636.17331.1
Unique NamemRNA_H-paniculata_contig9636.17331.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: D8LGI4_ECTSI (Cupin_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-20
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   31 KQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQVCMCVC 216
            KQ +I+NGQVPH+TGF+RA+F  G EVE HWHT+MDEVFY  +GKG  E+DGT+VQ+    C
Sbjct:   78 KQTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQLTPGTC 139          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: A0A1C0UUG5_9CYAN (Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0UUG5_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 2.630e-10
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 ERLLHVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQ----VCMCVCP 219
            ER+ H     KQVL+  G +PH+T FSRA F  G     H H+ M EVF+IE G+G   +DG        VC+ + P
Sbjct:   12 ERVSHNPAIAKQVLLRQGDLPHLTNFSRACFAPGQVSPGHAHSDMHEVFFIEAGQGTMIVDGQRFDLVPGVCLAIAP 88          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: A0A2M8L7A3_9BACT (Cupin domain-containing protein n=2 Tax=Candidatus Shapirobacteria TaxID=1752721 RepID=A0A2M8L7A3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 4.040e-9
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 ERLLHVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQVCMCVC 216
            E + H     KQVLI NG++P +TGFS+A+F  G   EEH H TM EV+++ +G+    I G  V+     C
Sbjct:   12 EGVAHQPEIKKQVLIKNGEIPQLTGFSQAVFKPGQACEEHRHPTMYEVYFLLEGEATLFISGREVKAAKNDC 83          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: UPI00105C3C86 (cupin domain-containing protein n=1 Tax=Paraglaciecola marina TaxID=2500157 RepID=UPI00105C3C86)

HSP 1 Score: 57.8 bits (138), Expect = 5.580e-9
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   31 KQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMV--QVCMCV 213
            K+VL+ NG +PH+T FS+A+F  G     H H+ M EVF+IE G G+  ++G  +  +  MCV
Sbjct:   22 KKVLVSNGDIPHITYFSKAVFPPGELANAHSHSDMTEVFFIESGTGVITVNGDDIPLEAGMCV 84          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: A0A2E7EDW5_9GAMM (Cupin n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E7EDW5_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 1.580e-8
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   31 KQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQVCMCVC 216
            KQ++I NGQ+PH+T FSRA+F  G     H H  M EVF++E G G   ++  ++ +    C
Sbjct:   22 KQLIIPNGQIPHLTNFSRAVFPLGEVAHAHNHRDMTEVFFVESGLGEMVVNDKVIAMAPGAC 83          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: UPI0019FAF60D (Cupin domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=UPI0019FAF60D)

HSP 1 Score: 55.5 bits (132), Expect = 4.460e-8
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   31 KQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQVCMCVC 216
            K+V++ +G++PH+T FS+A    G     H HT M EVF++E G+GM EID T   +   VC
Sbjct:   22 KKVMLRSGELPHLTNFSQARLAPGQIAAAHRHTDMYEVFFVEAGEGMIEIDQTPYPLQPGVC 83          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: A0A0P7YQQ6_9CYAN (Cupin domain n=5 Tax=Oscillatoriales TaxID=1150 RepID=A0A0P7YQQ6_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 4.660e-8
Identity = 27/62 (43.55%), Postives = 35/62 (56.45%), Query Frame = 1
Query:    1 ERLLHVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDG 186
            E + H     KQV++ NG +PH+T FS+A F  G     H H  M EVF++E G G   IDG
Sbjct:   12 EGVSHNPNIRKQVMLRNGDLPHLTNFSQARFAPGQIAPGHCHDNMSEVFFVESGSGTITIDG 73          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: A0A7Z9Y3R6_9CHLR (Cupin domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Z9Y3R6_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 1.260e-7
Identity = 28/77 (36.36%), Postives = 40/77 (51.95%), Query Frame = 1
Query:    1 ERLLHVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQ----VCMCVCP 219
            E + H     K+V++  G +PH+T FS+A+F  G     H H  M EVF +E G G+  IDG        +C+ V P
Sbjct:   12 ESVSHNPEIKKKVMLRQGDLPHITNFSQAVFAPGQTAVPHSHPDMAEVFLVESGSGIITIDGAAYPLEPGICVTVQP 88          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: A0A5B2TY33_9FLAO (Cupin domain-containing protein n=2 Tax=Maribacter TaxID=252356 RepID=A0A5B2TY33_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 1.290e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   13 HVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDG 186
            H+K   K+ L+  G++PH+  F  A+F  G +V+ H H TM EVF+I+ GK +FE++G
Sbjct:   19 HIK---KKTLVSKGEIPHLMMFGTAVFKPGDKVDFHLHETMFEVFFIQSGKVIFEVNG 73          
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Match: UPI001746D595 (cupin domain-containing protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI001746D595)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-7
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 ERLLHVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFYIEKGKGMFEIDGTMVQVCMCVC 216
            E++ H     K+V++  G +PH+T FS+A F  G     H H  M EVF++E G G+ +IDG +  +   +C
Sbjct:   12 EKVSHNPAIQKKVMLRLGDLPHLTNFSQARFAPGQIAAAHAHQDMCEVFFVESGSGIIQIDGQVYALETGIC 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9636.17331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LGI4_ECTSI1.090e-2062.90Cupin_2 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A1C0UUG5_9CYAN2.630e-1041.56Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0... [more]
A0A2M8L7A3_9BACT4.040e-941.67Cupin domain-containing protein n=2 Tax=Candidatus... [more]
UPI00105C3C865.580e-942.86cupin domain-containing protein n=1 Tax=Paraglacie... [more]
A0A2E7EDW5_9GAMM1.580e-840.32Cupin n=1 Tax=Oceanospirillaceae bacterium TaxID=1... [more]
UPI0019FAF60D4.460e-843.55Cupin domain-containing protein n=1 Tax=Leptolyngb... [more]
A0A0P7YQQ6_9CYAN4.660e-843.55Cupin domain n=5 Tax=Oscillatoriales TaxID=1150 Re... [more]
A0A7Z9Y3R6_9CHLR1.260e-736.36Cupin domain-containing protein n=1 Tax=Anaeroline... [more]
A0A5B2TY33_9FLAO1.290e-743.10Cupin domain-containing protein n=2 Tax=Maribacter... [more]
UPI001746D5952.020e-736.11cupin domain-containing protein n=1 Tax=Phormidium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9636contigH-paniculata_contig9636:8792..9028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.3347454-CDS-H-paniculata_contig9636:8791..90281622931195.3347454-CDS-H-paniculata_contig9636:8791..9028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9636 8792..9028 -
1691481633.2379737-CDS-H-paniculata_contig9636:8791..90281691481633.2379737-CDS-H-paniculata_contig9636:8791..9028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9636 8792..9028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9636.17331.1prot_H-paniculata_contig9636.17331.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9636 8792..9028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9636.17331.1

>prot_H-paniculata_contig9636.17331.1 ID=prot_H-paniculata_contig9636.17331.1|Name=mRNA_H-paniculata_contig9636.17331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
ERLLHVKTSIKQVLIINGQVPHVTGFSRAIFGRGHEVEEHWHTTMDEVFY
IEKGKGMFEIDGTMVQVCMCVCPLGVGA*
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mRNA from alignment at H-paniculata_contig9636:8792..9028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9636.17331.1 ID=mRNA_H-paniculata_contig9636.17331.1|Name=mRNA_H-paniculata_contig9636.17331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig9636:8792..9028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACGCCTGCTCCACGTTAAAACCTCGATCAAGCAGGTGTTGATTATAAA TGGACAGGTGCCGCACGTTACCGGCTTCTCCCGAGCGATTTTCGGGCGTG GGCATGAGGTAGAGGAGCACTGGCATACGACCATGGACGAAGTTTTTTAT ATAGAAAAGGGGAAGGGCATGTTCGAGATAGACGGGACCATGGTTCAGGT ATGTATGTGTGTGTGTCCTCTGGGTGTGGGGGCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9636:8792..9028-

>mRNA_H-paniculata_contig9636.17331.1 ID=mRNA_H-paniculata_contig9636.17331.1|Name=mRNA_H-paniculata_contig9636.17331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig9636:8792..9028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACGCCTGCTCCACGTTAAAACCTCGATCAAGCAGGTGTTGATTATAAA
TGGACAGGTGCCGCACGTTACCGGCTTCTCCCGAGCGATTTTCGGGCGTG
GGCATGAGGTAGAGGAGCACTGGCATACGACCATGGACGAAGTTTTTTAT
ATAGAAAAGGGGAAGGGCATGTTCGAGATAGACGGGACCATGGTTCAGGT
ATGTATGTGTGTGTGTCCTCTGGGTGTGGGGGCTTAAGAACGCCTGCTCC
ACGTTAAAACCTCGATCAAGCAGGTGTTGATTATAAATGGACAGGTGCCG
CACGTTACCGGCTTCTCCCGAGCGATTTTCGGGCGTGGGCATGAGGTAGA
GGAGCACTGGCATACGACCATGGACGAAGTTTTTTATATAGAAAAGGGGA
AGGGCATGTTCGAGATAGACGGGACCATGGTTCAGGTATGTATGTGTGTG
TGTCCTCTGGGTGTGGGGGCTTAA
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