mRNA_H-paniculata_contig963.17328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig963.17328.1
Unique NamemRNA_H-paniculata_contig963.17328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig963.17328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig963contigH-paniculata_contig963:29542..29985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size414
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig963.17328.1prot_H-paniculata_contig963.17328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig963 29623..29985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.6352415-UTR-H-paniculata_contig963:29541..296221622931194.6352415-UTR-H-paniculata_contig963:29541..29622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig963 29542..29622 -
1691481632.8824139-UTR-H-paniculata_contig963:29541..296221691481632.8824139-UTR-H-paniculata_contig963:29541..29622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig963 29542..29622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.6552858-CDS-H-paniculata_contig963:29622..297191622931194.6552858-CDS-H-paniculata_contig963:29622..29719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 29623..29719 -
1691481632.8975396-CDS-H-paniculata_contig963:29622..297191691481632.8975396-CDS-H-paniculata_contig963:29622..29719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 29623..29719 -
1622931194.6763468-CDS-H-paniculata_contig963:29749..299851622931194.6763468-CDS-H-paniculata_contig963:29749..29985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 29750..29985 -
1691481632.920448-CDS-H-paniculata_contig963:29749..299851691481632.920448-CDS-H-paniculata_contig963:29749..29985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 29750..29985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig963.17328.1

>prot_H-paniculata_contig963.17328.1 ID=prot_H-paniculata_contig963.17328.1|Name=mRNA_H-paniculata_contig963.17328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
VHGVVARVRLKSGLPALALCDFRRRVQCCKRPNLNRRCFLLALVVQHVVL
DHLVPLRRRCLEGYLDFCSILFGGYPSVNEHGVFTKRLQSNGRLGWSGAH
QFCQAVPILA*
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mRNA from alignment at H-paniculata_contig963:29542..29985-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig963.17328.1 ID=mRNA_H-paniculata_contig963.17328.1|Name=mRNA_H-paniculata_contig963.17328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig963:29542..29985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCATGGTGTTGTTGCGCGTGTTCGACTGAAGAGCGGACTTCCTGCCTT
AGCCCTTTGTGACTTTCGTCGTCGCGTTCAATGCTGTAAACGTCCAAACC
TTAACCGTCGTTGCTTCCTTCTTGCTCTTGTTGTTCAGCACGTAGTACTT
GATCACCTCGTGCCACTTCGCCGTAGGTGCCTTGAGGGTTATCTAGATTT
CTGTTCCATTCTTTTCGGTGGCTACCCTTCCGTCAAGCGCTATCACCAGA
CGCCTCCCCTCGGGAGTGAACATGGGGTTTTCACCAAGCGCCTTCAGAGC
AATGGTCGCCTAGGGTGGTCGGGTGCGCACCAGTTCTGCCAAGCTGTCCC
GATCCTAGCCTGATCGAAGAAATAACTGTTTGTCGATCCCCTCCTCCGCA
TTCTCGCGGCAATCTGCGACGGCAGCGAGGTTCTCCGAAGCAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig963:29542..29985-

>mRNA_H-paniculata_contig963.17328.1 ID=mRNA_H-paniculata_contig963.17328.1|Name=mRNA_H-paniculata_contig963.17328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig963:29542..29985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCATGGTGTTGTTGCGCGTGTTCGACTGAAGAGCGGACTTCCTGCCTT
AGCCCTTTGTGACTTTCGTCGTCGCGTTCAATGCTGTAAACGTCCAAACC
TTAACCGTCGTTGCTTCCTTCTTGCTCTTGTTGTTCAGCACGTAGTACTT
GATCACCTCGTGCCACTTCGCCGTAGGTGCCTTGAGGGTTATCTAGATTT
CTGTTCCATTCTTTTCGGTGGCTACCCTTCCGTCAAGTGCATGGTGTTGT
TGCGCGTGTTCGACTGAAGAGCGGACTTCCTGCCTTAGCCCTTTGTGACT
TTCGTCGTCGCGTTCAATGCTGTAAACGTCCAAACCTTAACCGTCGTTGC
TTCCTTCTTGCTCTTGTTGTTCAGCACGTAGTACTTGATCACCTCGTGCC
ACTTCGCCGTAGGTGCCTTGAGGGTTATCTAGATTTCTGTTCCATTCTTT
TCGGTGGCTACCCTTCCGTCAATGAACATGGGGTTTTCACCAAGCGCCTT
CAGAGCAATGGTCGCCTAGGGTGGTCGGGTGCGCACCAGTTCTGCCAAGC
TGTCCCGATCCTAGCCTGATGAACATGGGGTTTTCACCAAGCGCCTTCAG
AGCAATGGTCGCCTAGGGTGGTCGGGTGCGCACCAGTTCTGCCAAGCTGT
CCCGATCCTAGCCTGA
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