Homology
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
D7FPX6_ECTSI (Protein-serine/threonine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX6_ECTSI)
HSP 1 Score: 373 bits (958), Expect = 2.300e-126
Identity = 181/191 (94.76%), Postives = 187/191 (97.91%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
MVCQ+TSPAA+AEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGE NEDVVIKVADEGGGI+RSYM RIWSYLFTTADPAVQEGF+N+G+ ESDHAKESPLAGLGYGLPISRSYARYF GDLSIVSMEGYGTDAFVHLSRLGHHSEPLP
Sbjct: 295 MVCQETSPAAIAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEGNEDVVIKVADEGGGIRRSYMTRIWSYLFTTADPAVQEGFINLGEVESDHAKESPLAGLGYGLPISRSYARYFGGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 485
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A836CE82_9STRA (Protein-serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE82_9STRA)
HSP 1 Score: 356 bits (914), Expect = 4.770e-121
Identity = 170/191 (89.01%), Postives = 183/191 (95.81%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
MVCQ TSPAA+A AAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIM+ELIKNSMRATV++HGLDE+D PIR+VIADGEENEDVVIKVADEGGGI+RSYMNRIWSYLFTTADPAVQ+GF+ +G+ ESDHAKESPLAGLGYGLPISRSYARYF GDLS++SMEGYGTDAFVH SRLGHHSEPLP
Sbjct: 198 MVCQTTSPAAIAAAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMMELIKNSMRATVEYHGLDEIDMYPIRIVIADGEENEDVVIKVADEGGGIRRSYMNRIWSYLFTTADPAVQKGFIELGEVESDHAKESPLAGLGYGLPISRSYARYFGGDLSVMSMEGYGTDAFVHCSRLGHHSEPLP 388
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
W7TC29_9STRA (Protein-serine/threonine kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC29_9STRA)
HSP 1 Score: 294 bits (752), Expect = 1.010e-95
Identity = 141/191 (73.82%), Postives = 165/191 (86.39%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
+ C +TSP VA AI+DAKF+CTRQ+GDAP+VTLHGRLDLTF+YV H+HYI+LEL+KNSMRAT +FHG D+M PIR+VIADGE+NEDVVIKV+DEGGGI RS+++RIWSYLFTTADP +Q GFV++ SD SPLAGLGYGLPISR+YARYF GDLSI+SMEGYGTDAFVHLSRLG+H EPLP
Sbjct: 258 LCCLRTSPRDVALTAIDDAKFMCTRQHGDAPEVTLHGRLDLTFAYVSEHVHYILLELLKNSMRATAEFHGTDDMP--PIRIVIADGEDNEDVVIKVSDEGGGIPRSHISRIWSYLFTTADPEIQRGFVDLSHPASDFDTASPLAGLGYGLPISRAYARYFGGDLSIMSMEGYGTDAFVHLSRLGNHDEPLP 446
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7S3YIQ1_HETAK (Protein-serine/threonine kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIQ1_HETAK)
HSP 1 Score: 290 bits (741), Expect = 2.890e-94
Identity = 139/192 (72.40%), Postives = 162/192 (84.38%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQ-AESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
M+ SPA +A AI+DA FVC RQYGDAP+VTLHG+LD TF YVP HLHY+++E++KNSMRATV++HG+D D PIRVVIADGE NEDVVIK++DEGGGI RS M +IWSYLFTTADPA+Q+GFV + + ESDH SPLAGLGYGLPISRSYARYF GDLS++SMEGYGTDAF+HLSRLG H EPLP
Sbjct: 240 MISTAASPAQLARMAIDDATFVCQRQYGDAPEVTLHGKLDFTFPYVPQHLHYVLMEILKNSMRATVEYHGIDA-DMPPIRVVIADGETNEDVVIKISDEGGGIPRSIMTKIWSYLFTTADPAIQKGFVRMDERGESDHDTGSPLAGLGYGLPISRSYARYFGGDLSVMSMEGYGTDAFIHLSRLGDHDEPLP 430
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7S2LDN2_9STRA (Protein-serine/threonine kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDN2_9STRA)
HSP 1 Score: 282 bits (722), Expect = 8.540e-94
Identity = 136/191 (71.20%), Postives = 163/191 (85.34%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
++C KTSP V + A++DA F+CTR+YGDAP+V + GRLDLTF YVP+HLHYIMLEL+KNSMRATVD+HG+D D P++V+IADG+ENEDVVIKV+DEGGGI RS M RIWSYLFTTADPA+QEG V + DH+ +SPLAGLGYGLPISRSYARYF GD+S++SMEGYGTDAFVHL+RLG+ E LP
Sbjct: 66 IICNKTSPYEVVQQAVDDATFMCTRRYGDAPEVIISGRLDLTFPYVPTHLHYIMLELLKNSMRATVDWHGVDS-DYPPVKVIIADGKENEDVVIKVSDEGGGIPRSNMPRIWSYLFTTADPAIQEGMVAFND-QVDHSIDSPLAGLGYGLPISRSYARYFGGDMSVISMEGYGTDAFVHLTRLGNRRELLP 254
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7S2ALF0_9STRA (Protein-serine/threonine kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALF0_9STRA)
HSP 1 Score: 279 bits (713), Expect = 1.620e-93
Identity = 139/185 (75.14%), Postives = 160/185 (86.49%), Query Frame = 1
Query: 19 SPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
SP+ VA AAIEDA F+CTRQ+GDAP+VTLHGR DLTF YVPSHLHYI+LELIKNSMRATV+FHG+D + PIR+VIADGE+NEDVVIKV+DEGGGI R + ++WSYLF+TAD ++QE IG +SD SPLAGLGYGLPISRSYARYF GDLSI+SMEGYGTDAFVHLSRLG+H+EPLP
Sbjct: 1 SPSRVARAAIEDATFMCTRQHGDAPEVTLHGRQDLTFPYVPSHLHYILLELIKNSMRATVEFHGIDHLP--PIRIVIADGEDNEDVVIKVSDEGGGITRRDLVKMWSYLFSTADASIQEAA--IGGGDSDFDTGSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVHLSRLGNHNEPLP 181
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7S4RJ49_9STRA (Protein-serine/threonine kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RJ49_9STRA)
HSP 1 Score: 286 bits (732), Expect = 3.540e-93
Identity = 142/191 (74.35%), Postives = 163/191 (85.34%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
++CQKTSP + + AI+DA F+C R+YGDAP+V + GRLDLTF YVP+HLHYI LEL+KNSMRATVD+HG+D D PI+VVIADG ENEDVVIKV+DEGGGI RS MN+IWSYLFTTADPAVQEG V Q DHA +SPLAGLGYGLPISRSYARYF GDLSI+SMEGYGTDAFV+L+RLG+ EPLP
Sbjct: 220 IICQKTSPYEIVKRAIDDASFMCNRKYGDAPEVIITGRLDLTFPYVPTHLHYITLELLKNSMRATVDWHGVDA-DYPPIKVVIADGRENEDVVIKVSDEGGGIPRSNMNKIWSYLFTTADPAVQEGMVAF-QEHDDHAVDSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVYLTRLGNTREPLP 408
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7R9U3H0_9STRA (Protein-serine/threonine kinase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3H0_9STRA)
HSP 1 Score: 282 bits (722), Expect = 2.790e-91
Identity = 136/187 (72.73%), Postives = 159/187 (85.03%), Query Frame = 1
Query: 16 TSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNP-IRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
TSPA VA+AA+EDA ++C RQYG+APDVTLHG LD +F+YVP+HLHYI+LEL+KNSMRAT +FH D P +R+++ADG+ NEDVV+KV DEGGGI RS+M RIWSYLFTTADPAVQ+GFV IG AE DH SPLAGLGYGLPISRSYARYF GD+ I+SMEGYGTDAFVHL+RLG+ EPLP
Sbjct: 255 TSPAQVAQAAVEDASYMCERQYGEAPDVTLHGCLDRSFAYVPTHLHYILLELLKNSMRATCEFHA--HKDRLPDVRIIVADGDANEDVVLKVCDEGGGIARSHMRRIWSYLFTTADPAVQKGFVEIGGAEGDHDTHSPLAGLGYGLPISRSYARYFGGDMQIMSMEGYGTDAFVHLNRLGNADEPLP 439
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7S2URZ2_9STRA (Protein-serine/threonine kinase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URZ2_9STRA)
HSP 1 Score: 285 bits (728), Expect = 2.950e-91
Identity = 140/190 (73.68%), Postives = 162/190 (85.26%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPL 570
++C KTSP + AI+DA F+CTR+YGDAP+V + GRLD TF YVP+HLHYIMLEL+KNSMRATVD+HG+D D PI+VVIADG+ENEDVVIKV+DEGGGI RS MNRIWSYLFTTADPA+QEG V + DH+ +SPLAGLGYGLPISRSYARYF GDLSI+SMEGYGTDAFVHL+RLG+ EPL
Sbjct: 326 IICSKTSPYEIVRRAIDDASFMCTRKYGDAPEVIISGRLDFTFPYVPTHLHYIMLELLKNSMRATVDWHGVDA-DYPPIKVVIADGKENEDVVIKVSDEGGGIPRSNMNRIWSYLFTTADPAIQEGMVAFNE-NVDHSIDSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVHLTRLGNTREPL 513
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Match:
A0A7S2DXS7_9STRA (Protein-serine/threonine kinase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DXS7_9STRA)
HSP 1 Score: 281 bits (720), Expect = 3.390e-91
Identity = 140/191 (73.30%), Postives = 163/191 (85.34%), Query Frame = 1
Query: 1 MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHLHYIMLELIKNSMRATVDFHGLDEMDNNPIRVVIADGEENEDVVIKVADEGGGIQRSYMNRIWSYLFTTADPAVQEGFVNIGQAESDHAKESPLAGLGYGLPISRSYARYFRGDLSIVSMEGYGTDAFVHLSRLGHHSEPLP 573
++CQKTSP + + AI+DA F+C R+YGDAP+V + GRLDLTF YVP+HLHYI LEL+KNSMRATVD+HG+D D PI+VVIADG ENEDVVIKV+DEGGGI RS M +IWSYLFTTADPAVQEG V Q + DH+ +SPLAGLGYGLPISRSYARYF GDLSI+SMEGYGTDAFV+L+RLG+ EPLP
Sbjct: 233 IICQKTSPYEIVKRAIDDASFMCNRKYGDAPEVIITGRLDLTFPYVPTHLHYITLELLKNSMRATVDWHGVDA-DYPPIKVVIADGRENEDVVIKVSDEGGGIPRSNMKKIWSYLFTTADPAVQEGMVAFIQND-DHSVDSPLAGLGYGLPISRSYARYFGGDLSIMSMEGYGTDAFVYLTRLGNTREPLP 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9627.17324.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 2.30e-126 / Id = 94.76 Expect = 4.77e-121 / Id = 89.01 Expect = 1.01e-95 / Id = 73.82 Expect = 2.89e-94 / Id = 72.40 Expect = 8.54e-94 / Id = 71.20 Expect = 1.62e-93 / Id = 75.14 Expect = 3.54e-93 / Id = 74.35 Expect = 2.79e-91 / Id = 72.73 Expect = 2.95e-91 / Id = 73.68 Expect = 3.39e-91 / Id = 73.30 Sequence D7FPX6_ECTSI A0A836CE82_9STRA W7TC29_9STRA A0A7S3YIQ1_HETAK A0A7S2LDN2_9STRA A0A7S2ALF0_9STRA A0A7S4RJ49_9STRA A0A7R9U3H0_9STRA A0A7S2URZ2_9STRA A0A7S2DXS7_9STRA Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 276.6 Seed ortholog evalue 9e-72 Seed eggNOG ortholog 2850.Phatr50961 Preferred name PDK2 KEGG ko ko:K00898,ko:K12077 KEGG Pathway ko04066,ko04360,ko05230,map04066,map04360,map05230 Hectar predicted targeting category other localisation GOs GO:0000166,GO:0000302,GO:0001101,GO:0001666,GO:0001678,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0004740,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0005967,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006109,GO:0006111,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006464,GO:0006468,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006885,GO:0006915,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008286,GO:0008631,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009267,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009927,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010510,GO:0010565,GO:0010646,GO:0010675,GO:0010906,GO:0010941,GO:0012501,GO:0016020,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018130,GO:0018193,GO:0018209,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0023051,GO:0023052,GO:0030522,GO:0030554,GO:0030808,GO:0031323,GO:0031326,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033500,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034103,GO:0034248,GO:0034284,GO:0034599,GO:0034614,GO:0034641,GO:0034654,GO:0035357,GO:0035383,GO:0035384,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036473,GO:0042221,GO:0042304,GO:0042592,GO:0042593,GO:0042594,GO:0042762,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045124,GO:0045254,GO:0046320,GO:0046390,GO:0046483,GO:0046777,GO:0046850,GO:0046890,GO:0046982,GO:0046983,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050812,GO:0050848,GO:0050896,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051239,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055086,GO:0060089,GO:0060548,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070542,GO:0070887,GO:0071229,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071396,GO:0071398,GO:0071417,GO:0071453,GO:0071456,GO:0071495,GO:0071496,GO:0071616,GO:0071704,GO:0071944,GO:0072331,GO:0072332,GO:0072521,GO:0072522,GO:0072593,GO:0080090,GO:0090407,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0097411,GO:0098771,GO:0098798,GO:0140096,GO:1900371,GO:1900542,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1990204,GO:2000209,GO:2000377,GO:2000811 EggNOG free text desc. Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase EggNOG OGs 2XBFV@2836,COG0642@1,KOG0787@2759 EC 2.7.11.2 COG Functional cat. T Best tax level Bacillariophyta Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko01001 Exons 4 Model size 576 Cds size 576 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9627.17324.1
>prot_H-paniculata_contig9627.17324.1 ID=prot_H-paniculata_contig9627.17324.1|Name=mRNA_H-paniculata_contig9627.17324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MVCQKTSPAAVAEAAIEDAKFVCTRQYGDAPDVTLHGRLDLTFSYVPSHL back to top mRNA from alignment at H-paniculata_contig9627:2717..4501+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9627.17324.1 ID=mRNA_H-paniculata_contig9627.17324.1|Name=mRNA_H-paniculata_contig9627.17324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-paniculata_contig9627:2717..4501+ (Halopteris paniculata Hal_grac_a_UBK monoicous)ATGGTGTGCCAAAAAACATCGCCGGCTGCCGTTGCTGAGGCGGCCATCGA
AGATGCGAAATTCGTCTGCACCCGACAATACGGCGACGCGCCGGACGTGA
CGCTGCACGGGAGGTTGGACCTTACCTTTTCCT GTGAGATTCCCTCGTGT
ATATCTGAGATGTGGCGCACGTGATGTCGATATTTTATGCGCGTAATTTC
CGATATTAACAGAGAATACTAGGTGAGCTTCGGCCCTATTATGTGTTGTA
CACAACTATTTGACTATCTCGATTTTCAATTGGCGAACTCGCGATTACTC
CCCTCCCCTATTGTCTAAATTCGTTCGGGGCAGAGCAGGTGAAATGATAG
CAAATCCGTTAGTGTGGAAACTGCTCGAAATAATTGACTTTCGCGAATGT
TTCATGCGTCCCCACTACCGCGTCTCGCCCCCCCGCGCCGCCTGCCCAAC
CACCCGCCATTGTGCTTATGCGTGTTTGCTTCCTCGTTTCGGATTGATAA
CAACAGATGTTCCATCACACTTGCACTATATCATGCTGGAGCTGATCAAG
AACTCGATGCGAGCGACAGTGGACTTTCACGGTCTCGACGAGATGGACAA
CAACCCCATCCGCGTGGTTATCGCTGATGGAGAGGAGAACGAA GTGCGTC
TTTGCCTCCACTCCCCGCGCGTGTATCCCAGCAAGTCCTGAAGACCCTGC
AACTGTCACTAGTTCTCGCTGGCCACGACCACCTGCTTGAGTTACTGAAC
AGTATGTGGAAAGCCCCGAAAAAAATACGAAAAGAAATCTCAACGCAGCA
GGAAGAACAATAGGGCTGTGCACATAATGCTCTGTGGTTTTTGTCGTTAT
TGTCGTCGTCCTTGTAGCTGTCGCGGTCGCTGTTGGTGGTCGTGGTGGTC
GTGGTTGTGTAAAGGTCGTGGTTGATACGCCCTTCACAAACCGGTAACTG
TCTCCCACTAACGAGCCGCACTCAACCACAATATTTACCTCCACATGGAT
TATTTTTGCAGGACGTAGTAATCAAGGTGGCTGACGAAGGAGGAGGGATT
CAGCGCTCGTACATGAACCGTATCTGGAGTTACCTCTTCACCACGGCTGA
CCCCGCAGTGCAGGAAGGATTCGTCAACATCGGCCAGGCGGAGAGTGACC
ACGCCAAGGAGTCCCCGCTTGCTGGCCTTGG GTAAGATGCCGTAAAATAC
ACTAGGGAATCATATCCAGCATTGCTTCACTTCTTGAGCACTAGCCCGGG
GTCCGCACGAATGCGAAGGCCACCGCGAGGACGTCGTAACGTTAAATGGC
GCGAGTCAACTATGTCACCGAGACTGTCCATAGGAGAGCTTGAACGAATG
GTGTTGGTAGCACCATTCAATCGAGGTTACAAAGTGTTAACGTAATTTCG
GTCGATCTGATAAATATCCATGGTATCCCCATATATCTATGTTGTTGATT
AATCGATAAAATAACGATAACGGATACACGCCGCTCGTTGCCCGGCGGCA
ACGGATGCGCTTCATCTCTGCTCCTATAATCTGGCTATGAAATATGATGC
TGTCACCGCCGCGGCTGCTGACGAGTCTCCTGCTAGCACCGTGCGCGATT
GTCGCTCGCCCCCGTCATCATTGTTGTGTTTTCCCACTTCATCCTGCAGG
TACGGATTACCAATCAGCCGGAGTTACGCTCGTTACTTCCGCGGAGACCT
CAGTATCGTGTCCATGGAAGGGTATGGCACGGACGCATTTGTGCACCTCA
GTCGCCTGGGACACCATTCCGAGCCTTTGCCATGA back to top Coding sequence (CDS) from alignment at H-paniculata_contig9627:2717..4501+
>mRNA_H-paniculata_contig9627.17324.1 ID=mRNA_H-paniculata_contig9627.17324.1|Name=mRNA_H-paniculata_contig9627.17324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig9627:2717..4501+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top