mRNA_H-paniculata_contig9620.17321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-09_002080.1
Exons	4
Model size	2015
Cds size	312
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9620.17321.1	prot_H-paniculata_contig9620.17321.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig9620 1703..3909 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931194.018556-UTR-H-paniculata_contig9620:109..1702	1622931194.018556-UTR-H-paniculata_contig9620:109..1702	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9620 110..1702 -
1691481632.5891945-UTR-H-paniculata_contig9620:109..1702	1691481632.5891945-UTR-H-paniculata_contig9620:109..1702	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9620 110..1702 -
1622931194.089372-UTR-H-paniculata_contig9620:3909..3959	1622931194.089372-UTR-H-paniculata_contig9620:3909..3959	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9620 3910..3959 -
1691481632.6291487-UTR-H-paniculata_contig9620:3909..3959	1691481632.6291487-UTR-H-paniculata_contig9620:3909..3959	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9620 3910..3959 -
1622931194.109377-UTR-H-paniculata_contig9620:6540..6600	1622931194.109377-UTR-H-paniculata_contig9620:6540..6600	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9620 6541..6600 -
1691481632.6411014-UTR-H-paniculata_contig9620:6540..6600	1691481632.6411014-UTR-H-paniculata_contig9620:6540..6600	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9620 6541..6600 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931194.0353413-CDS-H-paniculata_contig9620:1702..1790	1622931194.0353413-CDS-H-paniculata_contig9620:1702..1790	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9620 1703..1790 -
1691481632.600515-CDS-H-paniculata_contig9620:1702..1790	1691481632.600515-CDS-H-paniculata_contig9620:1702..1790	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9620 1703..1790 -
1622931194.0569942-CDS-H-paniculata_contig9620:2183..2273	1622931194.0569942-CDS-H-paniculata_contig9620:2183..2273	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9620 2184..2273 -
1691481632.6088889-CDS-H-paniculata_contig9620:2183..2273	1691481632.6088889-CDS-H-paniculata_contig9620:2183..2273	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9620 2184..2273 -
1622931194.0759046-CDS-H-paniculata_contig9620:3775..3909	1622931194.0759046-CDS-H-paniculata_contig9620:3775..3909	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9620 3776..3909 -
1691481632.6183803-CDS-H-paniculata_contig9620:3775..3909	1691481632.6183803-CDS-H-paniculata_contig9620:3775..3909	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9620 3776..3909 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig9620:110..6600-
coding sequence from alignment at H-paniculata_contig9620:110..6600-

protein sequence of mRNA_H-paniculata_contig9620.17321.1

>prot_H-paniculata_contig9620.17321.1 ID=prot_H-paniculata_contig9620.17321.1|Name=mRNA_H-paniculata_contig9620.17321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTVSRALIRPAMAAAARATPSGRLTAEGCWAALASRRGMTTFGEKERGEE
TVYMRRKDKELLEKLLKKSHAKEELAKTELLEILGSHKLPDDVVEKIVYW
KEH*

mRNA from alignment at H-paniculata_contig9620:110..6600-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig9620.17321.1 ID=mRNA_H-paniculata_contig9620.17321.1|Name=mRNA_H-paniculata_contig9620.17321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6491bp|location=Sequence derived from alignment at H-paniculata_contig9620:110..6600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGTCAACCGACAGCAACAAACACTCTACTTTCCTGTACAGCACATCG
GAAGGGATAGGTCAGTACAGAGTATTGGAGGTTGTAACTTACATTCCAAA
TCGTTTCGTGTGATATGCCTCTCTCCCTACCACAACAGTAGGATTTGGCT
TGGTGCAGAATATTTACGTGTCTACTTATACCTGCCGTTCAGTTGCGTTA
TAGGCAAGGTCGATGCCTTGTGCTCTCCCAATTCGCTTATTGAGCGTGCC
CTTAAGCTTTCGTCTGGGCTGTATCCTGTCCAGCACACATGCATACTGTT
TGCAGCCTACATCATGTCTCAAATTCTGTGCCTCGTTTCCATAGAAATAT
AATTGAGCAAGCACACAGTAGTATGGACAGAGCCATGGAATGAACCCGCC
TCGTTTCGAAGACGATTGAATGCGTAAGGGTGATTTTGTAGCATGTACGG
TGTGCTTTCGGGGTAATATCAGGTGGCAGGGTCATTTGAAGAGCTACAGT
GAGTGCGATGTAGCTATATCACGACCAAAACCTGGTACTGGGACAGTTTC
CGTAATTTGTTTTGCTGAAGTCATTTTGCATATGCCCGAAAGTTATTTTG
CCCCCCAAAACGCGACGGGACCTTCCCGTTCATACTTATAGTCGACTCTC
CCTTCTCCATATTTGCCCTGATGAGCATAACGAACGCGTGAACTTCAACA
CTAACCAGATCCCAAGTTCCAACCCTCAAATCTGCGCCGTTGAGTTAACT
TGGTGTACTCTCACCAACAACTTCCACCTACCCACGCTGACTCTTTTTGT
CGGGCAAAGACAAATGCATATGTATCAGTTGCAAGCTTGCGCACCGAGAA
CATAAGTTGCCCCCGCATCTGACTAGTGTATAGGCAAGGGGCCTTACCAA
CGAACGGCCGAAGCAGGGTACTGCCCAACCCTACGAGATACCTCCAGAAT
CAAGAAAAAAATAGGGAAACTGAAGTATGTTCACTAGTTTGATGATTAGG
GCTACCGCTGCTGGCCAGCGTAAAGAAGTGTATTGGTGTCAAGCTTTTTT
TTGACTCTAAGAAGGCGGAACTTGAGGAGAAATAGTATATGGCATATTGA
ATCATGACTACGTTACATGACGAGGTTCTCAACATCGTTTCCCCCCTCCC
CCCATGACAACGACTGGACACAAAAGTCTCCCGGTTTTGAATTGCTCACG
TGTAGTTGACCCTTCCTGTGTGAATCCTTAGCTGAAGTCATTAAATTGGT
AGAGAAATAGCAATAGTTTAGTGTCCTGACTATTTTCCTGGATTCTAAAG
GTGTCTGGGGGGGTTGGATGCTGCGGGACGATGGGTTGGTGCTCGGGAAA
ACAGCCAAGAAAGTGGCGAATATGCCAAATATGTATTGCCAAGTGGCTCT
TTTTTAACGTCATTCCACCTATCGTCGTACCGCACTTGCTGTGCAACCTT
ATATGTTTGTAGTCATCGATACCCACGGTAGTCATTTCTTTGCCGGGCTT
ACGGGCAGTTTACGGATTTTTTTCATGTGAACGCATGTTTCACATGCGCA
CCACGACTGGAAATAACTACTACTGGTTCTTGTGCAAATGTTCGTGAAAG
AATCTTCAATCTCAGCGTAGTGGTCCAGCGCCGTGTTTGGTTTGATAACG
GCTCTCTCCATCCTGATGTATGTGCACTGCAGCGTATGAGGTTGCCTACG
GAGCGCCGCTCTCGATATAGTCGAACTAGTCCGAATAATCAAAATAATGT
GATATTTTCCGCAGAAAATTGAGCGGGTCACATGGATCGGGGTTTGGGAT
CTTGAACCAAGTCAAGTCACTGCAGGCTCGACTCGAAAAAGCCAAGCCAA
AAATAGTCGAGCGCCCAAACACCACAAACCATTGCGTTCTCTGCCACATT
TAGGGGGCTCCCTGCAACCCTCAACGTATTGATAAGGTGCACCGCACGCC
CCACTTAGCCAATTGGATACAGTAGCATTCCACCCATGAGCAGCCTACTA
CGCTAAAGTTTGGTGTAAAATTCAACATAACGAGTTTGTGTGTATCTCCC
GATACCTACAGCGAGAACGTTCTCGATTCCCAATTCGTCCGCGCCCAAAA
GTGACCACCCCAAAATTGAGGAAATTTGGACAGTGGTATCATGTACATTG
TCAACGGGTCACTTTCAGTTCGATTTCTTCGAATGTCTACTTCAGATTTT
GAGGGGGGTGACAAATCACGCATACGGAGGCTTCTGCATTTTTGTCACTT
CTGCCCTTCGTCCCGATAGTGTGGGCGTTTTATAGACTGTTAGCTTTTTA
TACGATGGTTGGATCGAATTTCCCAAAATTCATTTCACGTGGTCATGTCG
CTCGGATCAAATCATTGGTACCTAAAACGATGAGATGAGTGATGAAGAGT
ACCGAAAATCCCTTTGGTTTCGTTTGTTTTATTTCCTATTTTTCGTGAGA
ATTTGATGGATGTTCAACGTCAGTTTCGAGATTTTTTCCGTAACTATTTT
GTCCTCGTCGTTGCCGAATCTCTTTCCATTTTTTTATTTGCGTTTTTCAA
CACGTGATTCTGCATCCCCGTCCACCGATTCTCCTCCCCCTCTCCCGATG
GTAACTCGTTGTTGAAAACATATCAAATCTTGGACAACTAGGACCAAGAA
CACCAAGACAACCAAAGGGAGAATCCCAGCACGCCAACACCATGACTGTT
TCTAGAGCGCTCATTCGACCTGCAATGGCGGCCGCCGCTCGGGCCACCCC
CTCCGGCCGTTTAACAGCCGAAGGATGCTGGGCTGCTCTTGCATCGCGTC
GAGGGATGACAACGTTCGGAGAGAAGTGAGTGCCAAAAATAGGGGTGACA
ACACGGTGATTTTTCAAAAACGTTCGGGGGCTAATCAACGTTGAAATATT
GAAGGAAGGGTTGATTTTTATTTTTCGCAGGAGTGCTTCTTTCAGTTTCA
AGGGTTGGTCGGCGTCGATTTGTACCAGAAAGGTTGGCGAAACAAAGTAT
AAAGTACACTATTCCCAAAACCCCAAGTGCTGTAGTTGTTCGACTTGGCA
GCAGATTCTACCGCTTGGTCATTAAGCGGTTTTCACGATACTCACCGTGA
TGTGCGGCACAACGACAGGACTACTGTCGATCTTCAAAGGGGAATCGGAG
CGACCATGCCAGTTTTGTCTCTGTGCTGCCCTCGTAATTATTTAGCAAAA
CCCCACAAGTGACGCAATACGATGTAGGGTGATAGCGATACCTCGCTACA
GGGTATCAAACGGCCCATTGCTCCTGGGAGGAATAGCCAAGATGTTGTGA
ATGAAAGCGTTTTCGTCGGCGTTGTGACATGACATCCGGTGGCTTACCCC
CCCGCGGGTTTTTATCTTGGGCCGGAAATTTTGGGAGGGTAATTGCAATA
GAGGTCAGTTTCATTACTTTGCCAAGTGAGTCGGTTCACTCCTCTTTTTC
ATCTGACGAACGCTTTCTTGTTCGCCAATGCAATGAAAACCAACGCCGGA
ACTAACGCTACCTCTGTATAACTGTAGCTGTCCCCTTCGTCACTAGTGAG
CGTTGGCACAGCTCAAATTGGCGTAGTGGGCGCCGTGTCTGAGCGAGCGA
CGTGTTGAGTACACGTCGTGGGCCGTGCGAGTGTGACGTCCCCATCAGGG
GCATCTGTCATCGTAGTATCCAAGTTTGGTATGCTTCAAAACCATGGCAT
TTGATGGATTGGCAACACTCTCCTGCCGTCAGGAGGCAAAGCAAACACGT
TTGAGGTGTAGAGCCAAGCGAGTTTCCTGGAGTATATTTTTTCCGAGCGC
CCTGCACGGGGGGAGTCCGTGTCACGGGCTGGTTTCCGGCGCGCTGGGCA
ACGCCGACGGAAAATCAGCGAAGAGTTTGGCTAAGCTACTTACGCGCTAG
TTACGATTCGACGAGATTTAGTTCGTTCCGCGTGTAGTTACCTAAGAGTG
GAGATGAGGTGGAAGAAAACCTTCCAAGCTCTCGCTGGGAAACATGCTTT
CTCGACTGTATGGTGCCGACGTTACCCTTATTGTCTAGCCTTGCAGACGT
TTGGACACATAACCACCTGGAGGTACATGAAGGCCTTCGACCGGGCTTGT
GGAAGGATGACGCAACGCGCTCGATTTAACAATGACTTATGGACCGCGTT
TCGTAATTCGAGCGAGTTAGTCATCAGTGTTTTCATGTGTTTTTATGAGG
ATTATGATTTCTCGATGGGAATGCTATAACAGCATGTTGCGGAAAGCATG
TTACTACGCTTCGAAATATATGGATAAGGCCAACTAATCTCCGTTTTTTT
CGATATTACACGTGCTCGCTTGAAAAGGGAAAGAGGGGAAGAGACCGTGT
ACATGCGCAGGAAGGACAAGGAGCTCCTCGAGAAGCTTCTCAAGAAATCC
CACGCAAAAGAGGAACTGTGAGTGTATCGCGTACGTGCACTGCCCTGCTT
TCCCCTCTTGATTTGTGTTCTGCACGAGGACGGTGACTCCTCGTGCGGAC
GTTTATGATATGTCGGCAACTCCGCCCCACGCGCATCCGTAGCGGAGTTG
CGAAGTATACCCAGTATATGCAGGAGCGTCTCCCTCCACCCGTGATGGTC
AGTTTTAGTAAGACCAGCAATTGTTTCAAGTATTGTGTTTGCCTGATGAC
AGATGTGTTTTTTATGGCGATTTGACTCTTGTTATTCCGAGTGCTAGTTT
TCGAGAAAATCAGTTTGTCCACGCTTGTTGTGTATGTTTAATTTTCCGAC
GTATTTTTCGTGTGATCTACCAGTATTTGTGCTGACAATTTTGTTTTTGT
TATTGCACAGGGCCAAGACGGAACTGCTTGAAATCCTTGGCAGCCACAAA
CTTCCTGACGACGTGGTTGAGAAGATCGTCTACTGGAAGGAGCACTGAAC
GGACGTCTTCATGCGTGCGAGATATTTGCCTTATTGAGGGAATGCTACGG
TGAGAGGCACTCCGGGGGCAGTATCCCATGCCTTCGAGTCAAAGCACCAA
GGATTGATCAAGAGGTGGTGTCTAAAGCTGAAGAGTGGGTAAATATTCTC
GGCGACATGTACGTGGCCGCTATCCACAACGTGAAACGGGGTAATCTGAC
GGACGACTGTAAAACTCTTGAGAAAGCAACTAGTGCGAGAAGAGTGGACG
TGGTTCGAGTCTTTCCCCCTCGGTGTACTACCGTGTTGCCTTGGCTGTTG
AACTGTCCATGAAAGGTTCTTTCAGAATGGAACATACGGGGGGCGCGGGG
GAGGGGAGGTGTCCGGATGATTGCGTGGATGGGCAGTTTTTAATTTGAAC
TCCAGTACTCTGGTGGAGAGCAATCTCGCAACAGAAAGTCACAGAAAATA
GGATCAGGGTAATAGGTTATTTCGCAGAATTGGCACGATGGAGCGGGAGG
CGAGGGGTGATGGACTGAGTGTCGTGGTGGAACTGCCCGGTGTGCAGTCA
TTTGATGCTAGGCACGGGGATGCATGTGCGGGAATGTTTGGATTTTCAAA
CCTTGAATCCCATTACTCAGTGTTGGAGGGCCATCTTACAACAGGTAGTT
ACAGAAATAGGACGAGGTCAATCGGTCGTTGTGCAAAATTGGCACGATGA
AGCTAGAGGTGGGGGGGGGGTGACGAGCTGAATATCGTTGTGAAAGTGCT
GGGTGATCAGCCGTTTGGTGCTTGGCACTGCAAAAGTACCTTGAAAGTTT
GAGAAAAAGCATGAGCCTTGAACAATAAGACATCACCTCATGGTAGTGGA
GAAGGGTTGGGCTTGTATCTTACTCTTGATACTTTACAATTGCGCCGAAT
GAGTCCGCAGAGATCCAAAATAATGTTGGAGCTTTTCAAATCAGGACATT
TGTGTGGTGTTAATTTATAGACGGCAAAAGCGCAACGGCATTTTGGCCTC
TTCATCGGGGGATCATTACATACTTTTACCCTCATACGAAGCATGGACGA
ACTGGGGCACACCATGAAGTCAGTCAGAGCGCTGTGGCCATATCCGATTT
TCAGCCATGCTACGTTGTTTGCAGCTGAAAACGATTCGTCGTTCATGTTC
GTGTATCAAGGAATTATTTCAATTTTCAACGGGCAAGTCATCAATAAAAC
CTCGCCCGAATTGAACATATTAATGCGCGGAAAACAGGGTTTCGATAAGA
TTGTGAGACGTGAAATGTTGTCACAGGTGGCACTTTTTTAGATGGTCCTA
ACAAGGCTTATCACACCCCCACCCCGTTCGGATAGGAGATGGATGAATAG
AACGGTCTTACTTCACCCGTTCTGAGGCTTATTGCTGTGCGTGTACTTGT
GTTAATCAGTAGTATACGCAGCGTCTTCGACTGTTGTAGTGGCAGACTAG
TGGAACATTTTAGTCACGCAGGCGATGCAATTGGCATTGGCGAATAATTA
GATGCCTAAATTAACGAATCTGGGCAAACGTCGGTTGCACAGGCGGCGGG
GTGAGACATGGAAAGGCGGGGGCAGTACAATTTTACGCGCC

Coding sequence (CDS) from alignment at H-paniculata_contig9620:110..6600-

>mRNA_H-paniculata_contig9620.17321.1 ID=mRNA_H-paniculata_contig9620.17321.1|Name=mRNA_H-paniculata_contig9620.17321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig9620:110..6600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGTTTCTAGAGCGCTCATTCGACCTGCAATGGCGGCCGCCGCTCG
GGCCACCCCCTCCGGCCGTTTAACAGCCGAAGGATGCTGGGCTGCTCTTG
CATCGCGTCGAGGGATGACAACGTTCGGAGAGAAATGACTGTTTCTAGAG
CGCTCATTCGACCTGCAATGGCGGCCGCCGCTCGGGCCACCCCCTCCGGC
CGTTTAACAGCCGAAGGATGCTGGGCTGCTCTTGCATCGCGTCGAGGGAT
GACAACGTTCGGAGAGAAGGAAAGAGGGGAAGAGACCGTGTACATGCGCA
GGAAGGACAAGGAGCTCCTCGAGAAGCTTCTCAAGAAATCCCACGCAAAA
GAGGAACTGGAAAGAGGGGAAGAGACCGTGTACATGCGCAGGAAGGACAA
GGAGCTCCTCGAGAAGCTTCTCAAGAAATCCCACGCAAAAGAGGAACTGG
CCAAGACGGAACTGCTTGAAATCCTTGGCAGCCACAAACTTCCTGACGAC
GTGGTTGAGAAGATCGTCTACTGGAAGGAGCACTGAGGCCAAGACGGAAC
TGCTTGAAATCCTTGGCAGCCACAAACTTCCTGACGACGTGGTTGAGAAG
ATCGTCTACTGGAAGGAGCACTGA

mRNA_H-paniculata_contig9620.17321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

ZOOM

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POSITION

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