mRNA_H-paniculata_contig9620.17321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9620.17321.1
Unique NamemRNA_H-paniculata_contig9620.17321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9620.17321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9620contigH-paniculata_contig9620:110..6600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002080.1
Exons4
Model size2015
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9620.17321.1prot_H-paniculata_contig9620.17321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9620 1703..3909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.018556-UTR-H-paniculata_contig9620:109..17021622931194.018556-UTR-H-paniculata_contig9620:109..1702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9620 110..1702 -
1691481632.5891945-UTR-H-paniculata_contig9620:109..17021691481632.5891945-UTR-H-paniculata_contig9620:109..1702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9620 110..1702 -
1622931194.089372-UTR-H-paniculata_contig9620:3909..39591622931194.089372-UTR-H-paniculata_contig9620:3909..3959Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9620 3910..3959 -
1691481632.6291487-UTR-H-paniculata_contig9620:3909..39591691481632.6291487-UTR-H-paniculata_contig9620:3909..3959Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9620 3910..3959 -
1622931194.109377-UTR-H-paniculata_contig9620:6540..66001622931194.109377-UTR-H-paniculata_contig9620:6540..6600Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9620 6541..6600 -
1691481632.6411014-UTR-H-paniculata_contig9620:6540..66001691481632.6411014-UTR-H-paniculata_contig9620:6540..6600Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9620 6541..6600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.0353413-CDS-H-paniculata_contig9620:1702..17901622931194.0353413-CDS-H-paniculata_contig9620:1702..1790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9620 1703..1790 -
1691481632.600515-CDS-H-paniculata_contig9620:1702..17901691481632.600515-CDS-H-paniculata_contig9620:1702..1790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9620 1703..1790 -
1622931194.0569942-CDS-H-paniculata_contig9620:2183..22731622931194.0569942-CDS-H-paniculata_contig9620:2183..2273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9620 2184..2273 -
1691481632.6088889-CDS-H-paniculata_contig9620:2183..22731691481632.6088889-CDS-H-paniculata_contig9620:2183..2273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9620 2184..2273 -
1622931194.0759046-CDS-H-paniculata_contig9620:3775..39091622931194.0759046-CDS-H-paniculata_contig9620:3775..3909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9620 3776..3909 -
1691481632.6183803-CDS-H-paniculata_contig9620:3775..39091691481632.6183803-CDS-H-paniculata_contig9620:3775..3909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9620 3776..3909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9620.17321.1

>prot_H-paniculata_contig9620.17321.1 ID=prot_H-paniculata_contig9620.17321.1|Name=mRNA_H-paniculata_contig9620.17321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTVSRALIRPAMAAAARATPSGRLTAEGCWAALASRRGMTTFGEKERGEE
TVYMRRKDKELLEKLLKKSHAKEELAKTELLEILGSHKLPDDVVEKIVYW
KEH*
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mRNA from alignment at H-paniculata_contig9620:110..6600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9620.17321.1 ID=mRNA_H-paniculata_contig9620.17321.1|Name=mRNA_H-paniculata_contig9620.17321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6491bp|location=Sequence derived from alignment at H-paniculata_contig9620:110..6600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGTCAACCGACAGCAACAAACACTCTACTTTCCTGTACAGCACATCG
GAAGGGATAGGTCAGTACAGAGTATTGGAGGTTGTAACTTACATTCCAAA
TCGTTTCGTGTGATATGCCTCTCTCCCTACCACAACAGTAGGATTTGGCT
TGGTGCAGAATATTTACGTGTCTACTTATACCTGCCGTTCAGTTGCGTTA
TAGGCAAGGTCGATGCCTTGTGCTCTCCCAATTCGCTTATTGAGCGTGCC
CTTAAGCTTTCGTCTGGGCTGTATCCTGTCCAGCACACATGCATACTGTT
TGCAGCCTACATCATGTCTCAAATTCTGTGCCTCGTTTCCATAGAAATAT
AATTGAGCAAGCACACAGTAGTATGGACAGAGCCATGGAATGAACCCGCC
TCGTTTCGAAGACGATTGAATGCGTAAGGGTGATTTTGTAGCATGTACGG
TGTGCTTTCGGGGTAATATCAGGTGGCAGGGTCATTTGAAGAGCTACAGT
GAGTGCGATGTAGCTATATCACGACCAAAACCTGGTACTGGGACAGTTTC
CGTAATTTGTTTTGCTGAAGTCATTTTGCATATGCCCGAAAGTTATTTTG
CCCCCCAAAACGCGACGGGACCTTCCCGTTCATACTTATAGTCGACTCTC
CCTTCTCCATATTTGCCCTGATGAGCATAACGAACGCGTGAACTTCAACA
CTAACCAGATCCCAAGTTCCAACCCTCAAATCTGCGCCGTTGAGTTAACT
TGGTGTACTCTCACCAACAACTTCCACCTACCCACGCTGACTCTTTTTGT
CGGGCAAAGACAAATGCATATGTATCAGTTGCAAGCTTGCGCACCGAGAA
CATAAGTTGCCCCCGCATCTGACTAGTGTATAGGCAAGGGGCCTTACCAA
CGAACGGCCGAAGCAGGGTACTGCCCAACCCTACGAGATACCTCCAGAAT
CAAGAAAAAAATAGGGAAACTGAAGTATGTTCACTAGTTTGATGATTAGG
GCTACCGCTGCTGGCCAGCGTAAAGAAGTGTATTGGTGTCAAGCTTTTTT
TTGACTCTAAGAAGGCGGAACTTGAGGAGAAATAGTATATGGCATATTGA
ATCATGACTACGTTACATGACGAGGTTCTCAACATCGTTTCCCCCCTCCC
CCCATGACAACGACTGGACACAAAAGTCTCCCGGTTTTGAATTGCTCACG
TGTAGTTGACCCTTCCTGTGTGAATCCTTAGCTGAAGTCATTAAATTGGT
AGAGAAATAGCAATAGTTTAGTGTCCTGACTATTTTCCTGGATTCTAAAG
GTGTCTGGGGGGGTTGGATGCTGCGGGACGATGGGTTGGTGCTCGGGAAA
ACAGCCAAGAAAGTGGCGAATATGCCAAATATGTATTGCCAAGTGGCTCT
TTTTTAACGTCATTCCACCTATCGTCGTACCGCACTTGCTGTGCAACCTT
ATATGTTTGTAGTCATCGATACCCACGGTAGTCATTTCTTTGCCGGGCTT
ACGGGCAGTTTACGGATTTTTTTCATGTGAACGCATGTTTCACATGCGCA
CCACGACTGGAAATAACTACTACTGGTTCTTGTGCAAATGTTCGTGAAAG
AATCTTCAATCTCAGCGTAGTGGTCCAGCGCCGTGTTTGGTTTGATAACG
GCTCTCTCCATCCTGATGTATGTGCACTGCAGCGTATGAGGTTGCCTACG
GAGCGCCGCTCTCGATATAGTCGAACTAGTCCGAATAATCAAAATAATGT
GATATTTTCCGCAGAAAATTGAGCGGGTCACATGGATCGGGGTTTGGGAT
CTTGAACCAAGTCAAGTCACTGCAGGCTCGACTCGAAAAAGCCAAGCCAA
AAATAGTCGAGCGCCCAAACACCACAAACCATTGCGTTCTCTGCCACATT
TAGGGGGCTCCCTGCAACCCTCAACGTATTGATAAGGTGCACCGCACGCC
CCACTTAGCCAATTGGATACAGTAGCATTCCACCCATGAGCAGCCTACTA
CGCTAAAGTTTGGTGTAAAATTCAACATAACGAGTTTGTGTGTATCTCCC
GATACCTACAGCGAGAACGTTCTCGATTCCCAATTCGTCCGCGCCCAAAA
GTGACCACCCCAAAATTGAGGAAATTTGGACAGTGGTATCATGTACATTG
TCAACGGGTCACTTTCAGTTCGATTTCTTCGAATGTCTACTTCAGATTTT
GAGGGGGGTGACAAATCACGCATACGGAGGCTTCTGCATTTTTGTCACTT
CTGCCCTTCGTCCCGATAGTGTGGGCGTTTTATAGACTGTTAGCTTTTTA
TACGATGGTTGGATCGAATTTCCCAAAATTCATTTCACGTGGTCATGTCG
CTCGGATCAAATCATTGGTACCTAAAACGATGAGATGAGTGATGAAGAGT
ACCGAAAATCCCTTTGGTTTCGTTTGTTTTATTTCCTATTTTTCGTGAGA
ATTTGATGGATGTTCAACGTCAGTTTCGAGATTTTTTCCGTAACTATTTT
GTCCTCGTCGTTGCCGAATCTCTTTCCATTTTTTTATTTGCGTTTTTCAA
CACGTGATTCTGCATCCCCGTCCACCGATTCTCCTCCCCCTCTCCCGATG
GTAACTCGTTGTTGAAAACATATCAAATCTTGGACAACTAGGACCAAGAA
CACCAAGACAACCAAAGGGAGAATCCCAGCACGCCAACACCATGACTGTT
TCTAGAGCGCTCATTCGACCTGCAATGGCGGCCGCCGCTCGGGCCACCCC
CTCCGGCCGTTTAACAGCCGAAGGATGCTGGGCTGCTCTTGCATCGCGTC
GAGGGATGACAACGTTCGGAGAGAAGTGAGTGCCAAAAATAGGGGTGACA
ACACGGTGATTTTTCAAAAACGTTCGGGGGCTAATCAACGTTGAAATATT
GAAGGAAGGGTTGATTTTTATTTTTCGCAGGAGTGCTTCTTTCAGTTTCA
AGGGTTGGTCGGCGTCGATTTGTACCAGAAAGGTTGGCGAAACAAAGTAT
AAAGTACACTATTCCCAAAACCCCAAGTGCTGTAGTTGTTCGACTTGGCA
GCAGATTCTACCGCTTGGTCATTAAGCGGTTTTCACGATACTCACCGTGA
TGTGCGGCACAACGACAGGACTACTGTCGATCTTCAAAGGGGAATCGGAG
CGACCATGCCAGTTTTGTCTCTGTGCTGCCCTCGTAATTATTTAGCAAAA
CCCCACAAGTGACGCAATACGATGTAGGGTGATAGCGATACCTCGCTACA
GGGTATCAAACGGCCCATTGCTCCTGGGAGGAATAGCCAAGATGTTGTGA
ATGAAAGCGTTTTCGTCGGCGTTGTGACATGACATCCGGTGGCTTACCCC
CCCGCGGGTTTTTATCTTGGGCCGGAAATTTTGGGAGGGTAATTGCAATA
GAGGTCAGTTTCATTACTTTGCCAAGTGAGTCGGTTCACTCCTCTTTTTC
ATCTGACGAACGCTTTCTTGTTCGCCAATGCAATGAAAACCAACGCCGGA
ACTAACGCTACCTCTGTATAACTGTAGCTGTCCCCTTCGTCACTAGTGAG
CGTTGGCACAGCTCAAATTGGCGTAGTGGGCGCCGTGTCTGAGCGAGCGA
CGTGTTGAGTACACGTCGTGGGCCGTGCGAGTGTGACGTCCCCATCAGGG
GCATCTGTCATCGTAGTATCCAAGTTTGGTATGCTTCAAAACCATGGCAT
TTGATGGATTGGCAACACTCTCCTGCCGTCAGGAGGCAAAGCAAACACGT
TTGAGGTGTAGAGCCAAGCGAGTTTCCTGGAGTATATTTTTTCCGAGCGC
CCTGCACGGGGGGAGTCCGTGTCACGGGCTGGTTTCCGGCGCGCTGGGCA
ACGCCGACGGAAAATCAGCGAAGAGTTTGGCTAAGCTACTTACGCGCTAG
TTACGATTCGACGAGATTTAGTTCGTTCCGCGTGTAGTTACCTAAGAGTG
GAGATGAGGTGGAAGAAAACCTTCCAAGCTCTCGCTGGGAAACATGCTTT
CTCGACTGTATGGTGCCGACGTTACCCTTATTGTCTAGCCTTGCAGACGT
TTGGACACATAACCACCTGGAGGTACATGAAGGCCTTCGACCGGGCTTGT
GGAAGGATGACGCAACGCGCTCGATTTAACAATGACTTATGGACCGCGTT
TCGTAATTCGAGCGAGTTAGTCATCAGTGTTTTCATGTGTTTTTATGAGG
ATTATGATTTCTCGATGGGAATGCTATAACAGCATGTTGCGGAAAGCATG
TTACTACGCTTCGAAATATATGGATAAGGCCAACTAATCTCCGTTTTTTT
CGATATTACACGTGCTCGCTTGAAAAGGGAAAGAGGGGAAGAGACCGTGT
ACATGCGCAGGAAGGACAAGGAGCTCCTCGAGAAGCTTCTCAAGAAATCC
CACGCAAAAGAGGAACTGTGAGTGTATCGCGTACGTGCACTGCCCTGCTT
TCCCCTCTTGATTTGTGTTCTGCACGAGGACGGTGACTCCTCGTGCGGAC
GTTTATGATATGTCGGCAACTCCGCCCCACGCGCATCCGTAGCGGAGTTG
CGAAGTATACCCAGTATATGCAGGAGCGTCTCCCTCCACCCGTGATGGTC
AGTTTTAGTAAGACCAGCAATTGTTTCAAGTATTGTGTTTGCCTGATGAC
AGATGTGTTTTTTATGGCGATTTGACTCTTGTTATTCCGAGTGCTAGTTT
TCGAGAAAATCAGTTTGTCCACGCTTGTTGTGTATGTTTAATTTTCCGAC
GTATTTTTCGTGTGATCTACCAGTATTTGTGCTGACAATTTTGTTTTTGT
TATTGCACAGGGCCAAGACGGAACTGCTTGAAATCCTTGGCAGCCACAAA
CTTCCTGACGACGTGGTTGAGAAGATCGTCTACTGGAAGGAGCACTGAAC
GGACGTCTTCATGCGTGCGAGATATTTGCCTTATTGAGGGAATGCTACGG
TGAGAGGCACTCCGGGGGCAGTATCCCATGCCTTCGAGTCAAAGCACCAA
GGATTGATCAAGAGGTGGTGTCTAAAGCTGAAGAGTGGGTAAATATTCTC
GGCGACATGTACGTGGCCGCTATCCACAACGTGAAACGGGGTAATCTGAC
GGACGACTGTAAAACTCTTGAGAAAGCAACTAGTGCGAGAAGAGTGGACG
TGGTTCGAGTCTTTCCCCCTCGGTGTACTACCGTGTTGCCTTGGCTGTTG
AACTGTCCATGAAAGGTTCTTTCAGAATGGAACATACGGGGGGCGCGGGG
GAGGGGAGGTGTCCGGATGATTGCGTGGATGGGCAGTTTTTAATTTGAAC
TCCAGTACTCTGGTGGAGAGCAATCTCGCAACAGAAAGTCACAGAAAATA
GGATCAGGGTAATAGGTTATTTCGCAGAATTGGCACGATGGAGCGGGAGG
CGAGGGGTGATGGACTGAGTGTCGTGGTGGAACTGCCCGGTGTGCAGTCA
TTTGATGCTAGGCACGGGGATGCATGTGCGGGAATGTTTGGATTTTCAAA
CCTTGAATCCCATTACTCAGTGTTGGAGGGCCATCTTACAACAGGTAGTT
ACAGAAATAGGACGAGGTCAATCGGTCGTTGTGCAAAATTGGCACGATGA
AGCTAGAGGTGGGGGGGGGGTGACGAGCTGAATATCGTTGTGAAAGTGCT
GGGTGATCAGCCGTTTGGTGCTTGGCACTGCAAAAGTACCTTGAAAGTTT
GAGAAAAAGCATGAGCCTTGAACAATAAGACATCACCTCATGGTAGTGGA
GAAGGGTTGGGCTTGTATCTTACTCTTGATACTTTACAATTGCGCCGAAT
GAGTCCGCAGAGATCCAAAATAATGTTGGAGCTTTTCAAATCAGGACATT
TGTGTGGTGTTAATTTATAGACGGCAAAAGCGCAACGGCATTTTGGCCTC
TTCATCGGGGGATCATTACATACTTTTACCCTCATACGAAGCATGGACGA
ACTGGGGCACACCATGAAGTCAGTCAGAGCGCTGTGGCCATATCCGATTT
TCAGCCATGCTACGTTGTTTGCAGCTGAAAACGATTCGTCGTTCATGTTC
GTGTATCAAGGAATTATTTCAATTTTCAACGGGCAAGTCATCAATAAAAC
CTCGCCCGAATTGAACATATTAATGCGCGGAAAACAGGGTTTCGATAAGA
TTGTGAGACGTGAAATGTTGTCACAGGTGGCACTTTTTTAGATGGTCCTA
ACAAGGCTTATCACACCCCCACCCCGTTCGGATAGGAGATGGATGAATAG
AACGGTCTTACTTCACCCGTTCTGAGGCTTATTGCTGTGCGTGTACTTGT
GTTAATCAGTAGTATACGCAGCGTCTTCGACTGTTGTAGTGGCAGACTAG
TGGAACATTTTAGTCACGCAGGCGATGCAATTGGCATTGGCGAATAATTA
GATGCCTAAATTAACGAATCTGGGCAAACGTCGGTTGCACAGGCGGCGGG
GTGAGACATGGAAAGGCGGGGGCAGTACAATTTTACGCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig9620:110..6600-

>mRNA_H-paniculata_contig9620.17321.1 ID=mRNA_H-paniculata_contig9620.17321.1|Name=mRNA_H-paniculata_contig9620.17321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig9620:110..6600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGTTTCTAGAGCGCTCATTCGACCTGCAATGGCGGCCGCCGCTCG
GGCCACCCCCTCCGGCCGTTTAACAGCCGAAGGATGCTGGGCTGCTCTTG
CATCGCGTCGAGGGATGACAACGTTCGGAGAGAAATGACTGTTTCTAGAG
CGCTCATTCGACCTGCAATGGCGGCCGCCGCTCGGGCCACCCCCTCCGGC
CGTTTAACAGCCGAAGGATGCTGGGCTGCTCTTGCATCGCGTCGAGGGAT
GACAACGTTCGGAGAGAAGGAAAGAGGGGAAGAGACCGTGTACATGCGCA
GGAAGGACAAGGAGCTCCTCGAGAAGCTTCTCAAGAAATCCCACGCAAAA
GAGGAACTGGAAAGAGGGGAAGAGACCGTGTACATGCGCAGGAAGGACAA
GGAGCTCCTCGAGAAGCTTCTCAAGAAATCCCACGCAAAAGAGGAACTGG
CCAAGACGGAACTGCTTGAAATCCTTGGCAGCCACAAACTTCCTGACGAC
GTGGTTGAGAAGATCGTCTACTGGAAGGAGCACTGAGGCCAAGACGGAAC
TGCTTGAAATCCTTGGCAGCCACAAACTTCCTGACGACGTGGTTGAGAAG
ATCGTCTACTGGAAGGAGCACTGA
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