mRNA_H-paniculata_contig12758.1732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12758.1732.1
Unique NamemRNA_H-paniculata_contig12758.1732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12758.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12758contigH-paniculata_contig12758:302..1843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size664
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.3101919-CDS-H-paniculata_contig12758:301..3641622928997.3101919-CDS-H-paniculata_contig12758:301..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12758 302..364 -
1691480695.7316003-CDS-H-paniculata_contig12758:301..3641691480695.7316003-CDS-H-paniculata_contig12758:301..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12758 302..364 -
1622928997.3263752-CDS-H-paniculata_contig12758:1243..18431622928997.3263752-CDS-H-paniculata_contig12758:1243..1843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12758 1244..1843 -
1691480695.7399948-CDS-H-paniculata_contig12758:1243..18431691480695.7399948-CDS-H-paniculata_contig12758:1243..1843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12758 1244..1843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12758.1732.1prot_H-paniculata_contig12758.1732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12758 302..1843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12758.1732.1

>prot_H-paniculata_contig12758.1732.1 ID=prot_H-paniculata_contig12758.1732.1|Name=mRNA_H-paniculata_contig12758.1732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
LLGHGEVAGVGIPDVEGVHFVAAAWMVECLERSAVADVEAHRVVHPPTLV
PLPPISLGDDAPKARSSTVDRTVIDRGAVADEEAMLLVPSTAAAIAAAHG
TSSARIDNDTGEERPPSDIILKSASSDEPRQDILLEECGSGKRRTMMERA
DDGKNADVARAAVDKTLESRAVAGGIGGANSKVAEKRGKFFCQSGSSRDH
RPCNEKAAAALESLSEIYSVF
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mRNA from alignment at H-paniculata_contig12758:302..1843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12758.1732.1 ID=mRNA_H-paniculata_contig12758.1732.1|Name=mRNA_H-paniculata_contig12758.1732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1542bp|location=Sequence derived from alignment at H-paniculata_contig12758:302..1843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACTTGGCCACGGGGAGGTTGCTGGAGTCGGAATCCCTGACGTCGAAGG
CGTTCACTTCGTCGCTGCGGCCTGGATGGTGGAATGCTTGGAGCGCTCGG
CTGTGGCGGATGTCGAGGCTCACCGGGTGGTCCATCCGCCCACACTCGTC
CCGCTTCCACCGATCTCTCTTGGGGATGATGCTCCTAAAGCTCGCAGTTC
AACCGTGGACAGAACAGTTATTGACAGGGGCGCCGTCGCTGACGAGGAAG
CGATGCTTTTAGTACCTTCAACCGCCGCCGCCATCGCTGCCGCACACGGA
ACATCTTCAGCTCGGATCGACAATGACACAGGAGAAGAACGCCCGCCATC
GGATATCATTTTAAAATCGGCGTCGTCCGATGAGCCACGGCAAGATATTT
TGTTAGAAGAATGTGGCAGTGGGAAAAGACGGACAATGATGGAAAGGGCG
GATGATGGGAAAAACGCAGATGTTGCAAGGGCGGCAGTAGACAAGACCCT
TGAGTCGCGGGCGGTGGCGGGCGGCATTGGTGGGGCAAACTCGAAAGTGG
CGGAGAAGCGGGGGAAATTTTTCTGTCAGTCGGGCAGCTCTCGCGACCAT
GTGAGCCTGGAAGGTTATCGATTATTTGTTTTTGATGAATTGGTCGTGTT
GAAGGTGTTGAAGGGGTGGTACCTTTTTTTTAATGGTACAGAAAGGAGGA
CAAATGCAAGTGGCAATAGTCTTAAGTTGCTTAGAAGATCAATCTCATGC
GCTCCTTCACTGTGAAACCTACGTGCTCTGGCGTATGACGCATGACTCGA
GCGATGAATACGTGAAAACGAATTTCTTTCAATATCTCACGTGCAGGATA
CTGGGAATGTGGCGTTGTTGGCAGATTTATTGAACCCGCCAGGGAATATC
AAGCGCGGCGATTTAATTTACTCGTTGGACTGAAATTCGACGTTTGGCCG
CCTATTTTCATCGTGGAGTTCAATAAGTGGGAATATCCTCGTCGACTGTC
ACCTCTCACGTTGCACAACCATTGCATATTTTACCGTTTCGTCTGTTCTC
GTCCGGCGGCACAAAGTATCCGTTAGTCTGTGTCAGAGGCGCTAGTAAGC
CCCAAGAAGCGGCAACTTGTGGACTTACGAAGTATCAACCGCAGTGAATA
TTTTGTCGCTACCGCAGCGCACGGTGGGTGCCACAGAATGCACAGGGGGC
AGGCACACCCTACCCACCCCGAACAGCAGTTTCGATGTTTACTTGTTAAC
CTTGACATGTGCGTGTTCCCCAAAGTACACTTGTTCCCTTCTTTTCGCTG
CTGTCTCTTGCCTCGATTGTTGGCGTTTTTCGCGGATGGGGGGTTGGTTG
CTGGTCTCTTACTTTGTCCCGACATGGTCATTCTCCATTTTTCTTTTGTC
GTGTCTTCGTCCGTCACCCTTCCTTTCCCCAACCGTTCGTCCTTTGTCCC
TTCTACTGGCAAAAAATCAACGTTAACAGCGACCGTGCAATGAAAAGGCA
GCCGCGGCCTTGGAGAGCTTGTCCGAGATATACTCGGTGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12758:302..1843-

>mRNA_H-paniculata_contig12758.1732.1 ID=mRNA_H-paniculata_contig12758.1732.1|Name=mRNA_H-paniculata_contig12758.1732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig12758:302..1843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACTTGGCCACGGGGAGGTTGCTGGAGTCGGAATCCCTGACGTCGAAGG
CGTTCACTTCGTCGCTGCGGCCTGGATGGTGGAATGCTTGGAGCGCTCGG
CTGTGGCGGATGTCGAGGCTCACCGGGTGGTCCATCCGCCCACACTCGTC
CCGCTTCCACCGATCTCTCTTGGGGATGATGCTCCTAAAGCTCGCAGTTC
AACCGTGGACAGAACAGTTATTGACAGGGGCGCCGTCGCTGACGAGGAAG
CGATGCTTTTAGTACCTTCAACCGCCGCCGCCATCGCTGCCGCACACGGA
ACATCTTCAGCTCGGATCGACAATGACACAGGAGAAGAACGCCCGCCATC
GGATATCATTTTAAAATCGGCGTCGTCCGATGAGCCACGGCAAGATATTT
TGTTAGAAGAATGTGGCAGTGGGAAAAGACGGACAATGATGGAAAGGGCG
GATGATGGGAAAAACGCAGATGTTGCAAGGGCGGCAGTAGACAAGACCCT
TGAGTCGCGGGCGGTGGCGGGCGGCATTGGTGGGGCAAACTCGAAAGTGG
CGGAGAAGCGGGGGAAATTTTTCTGTCAGTCGGGCAGCTCTCGCGACCAT
CTACTTGGCCACGGGGAGGTTGCTGGAGTCGGAATCCCTGACGTCGAAGG
CGTTCACTTCGTCGCTGCGGCCTGGATGGTGGAATGCTTGGAGCGCTCGG
CTGTGGCGGATGTCGAGGCTCACCGGGTGGTCCATCCGCCCACACTCGTC
CCGCTTCCACCGATCTCTCTTGGGGATGATGCTCCTAAAGCTCGCAGTTC
AACCGTGGACAGAACAGTTATTGACAGGGGCGCCGTCGCTGACGAGGAAG
CGATGCTTTTAGTACCTTCAACCGCCGCCGCCATCGCTGCCGCACACGGA
ACATCTTCAGCTCGGATCGACAATGACACAGGAGAAGAACGCCCGCCATC
GGATATCATTTTAAAATCGGCGTCGTCCGATGAGCCACGGCAAGATATTT
TGTTAGAAGAATGTGGCAGTGGGAAAAGACGGACAATGATGGAAAGGGCG
GATGATGGGAAAAACGCAGATGTTGCAAGGGCGGCAGTAGACAAGACCCT
TGAGTCGCGGGCGGTGGCGGGCGGCATTGGTGGGGCAAACTCGAAAGTGG
CGGAGAAGCGGGGGAAATTTTTCTGTCAGTCGGGCAGCTCTCGCGACCAT
CGACCGTGCAATGAAAAGGCAGCCGCGGCCTTGGAGAGCTTGTCCGAGAT
ATACTCGGTGTTCCGACCGTGCAATGAAAAGGCAGCCGCGGCCTTGGAGA
GCTTGTCCGAGATATACTCGGTGTTC
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