mRNA_H-paniculata_contig9609.17309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9609.17309.1
Unique NamemRNA_H-paniculata_contig9609.17309.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 1.330e-110
Identity = 193/254 (75.98%), Postives = 210/254 (82.68%), Query Frame = 1
Query:   58 VPSTMTGILGPSGAGKSSLLDLLAGRKRKGEG-----VSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLTCRQDGGDLPALFRRSSMA 804
            VPSTMTGILGPSGAGKSSLLDL+AGRKR+GEG     VS    G     G EAVRRV GYV QEDVLPGTL+CYEHLMFHARLRMP  AS+ +R  RVLWV E LGL RVADSRIGDEL RGLSGGERRRLSIA ELVARPALLF DEPTTGLDAATALRVM LL GVA+RGTT+LCSLHQPRP+V +LLD+V+LLS G+VAY G P DA  +F SVGRPFP  Q HPADAML+L CR+DG DLP+LFRRS +A
Sbjct:  527 VPSTMTGILGPSGAGKSSLLDLVAGRKRRGEGRTTGSVSLAYDGTGNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGASFAEREERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLDAATALRVMTLLSGVASRGTTVLCSLHQPRPRVFSLLDRVILLSGGRVAYSGRPGDAEEFFRSVGRPFPRHQPHPADAMLSLVCREDGRDLPSLFRRSQLA 780          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 4.350e-108
Identity = 185/250 (74.00%), Postives = 210/250 (84.00%), Query Frame = 1
Query:   58 VPSTMTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRV-----GGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLTCRQDGGDLPALFRR 792
            +PST+TGILGPSGAGKSSLLD+LAGRKR GEG +  +V     G     G   +RRVAGYVPQEDVLPGTL+CYEHLMFHARLRMP +A++ +RR R L V+  LGLSRVADSR+GD   RGLSGGE+RRLSIAAEL+A P LLFLDEPTTGLDAATALRVMVLL+GVA+RGTT+LCSLHQPRP+VLNLLD VMLLS+G+VAYFG+P  +  YF SVGRPFP +Q HPADAMLTL CR+DGG LPALF R
Sbjct:  494 LPSTLTGILGPSGAGKSSLLDILAGRKRSGEGRASGQVFVSLDGRGGRGGPAEIRRVAGYVPQEDVLPGTLTCYEHLMFHARLRMPRKATHGERRERALAVLGELGLSRVADSRVGDARKRGLSGGEKRRLSIAAELMAGPPLLFLDEPTTGLDAATALRVMVLLKGVASRGTTVLCSLHQPRPRVLNLLDNVMLLSRGKVAYFGSPQGSESYFSSVGRPFPAEQPHPADAMLTLCCREDGGALPALFER 743          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 4.570e-108
Identity = 187/248 (75.40%), Postives = 208/248 (83.87%), Query Frame = 1
Query:   64 STMTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRV-----GGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLTCRQDGGDLPALFRR 792
            ST+TGILGPSGAGKSSLLD+LAGRKR GEG +   V     G     G E +RRVAGYVPQEDVLPGTL+CYEHLMFHARLRMP +AS+ +RR R L V+  LGLSRVADSR+GD   RGLSGGE+RRLSIAAEL+A P LLFLDEPTTGLDAATALRVMVLLRGVA+RGTT+LCSLHQPRP+VLNLLD VMLLS+G+VAYFG+P  +  YF SVGRPFP +Q HPADAMLTL CR+DGG LPALF R
Sbjct:  594 STLTGILGPSGAGKSSLLDILAGRKRSGEGRASGHVSVSLDGRGGRGGPEDIRRVAGYVPQEDVLPGTLTCYEHLMFHARLRMPRKASHAERRERALAVLAELGLSRVADSRVGDARKRGLSGGEKRRLSIAAELMAGPPLLFLDEPTTGLDAATALRVMVLLRGVASRGTTVLCSLHQPRPRVLNLLDNVMLLSRGKVAYFGSPQGSESYFSSVGRPFPAEQPHPADAMLTLCCREDGGALPALFER 841          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A835Z9G6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G6_9STRA)

HSP 1 Score: 214 bits (544), Expect = 9.840e-62
Identity = 123/214 (57.48%), Postives = 147/214 (68.69%), Query Frame = 1
Query:   70 MTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRVG-----GAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAE----ASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYF 684
            +TG+LGPSGAGK++LL+LLAGR+  G    G   G     GAAA   E VR V+GYV Q+DVLPGTL+ YEHL FHA LR+P           R ARVL VI+ LGL  VADS IGD   RG+SGGERRR+SIAAEL+ RP LLFLDEPT+GLDA +AL VM L+   A RGT ++ SLHQPR +V + L + +LL  G+VAYFG P     YF
Sbjct:    1 VTGLLGPSGAGKTTLLELLAGRRAAGGAERGAWSGALELDGAAAASPEDVRAVSGYVAQDDVLPGTLTVYEHLAFHAALRLPRGHGRGGGATQRTARVLEVIDNLGLGAVADSLIGDAFRRGISGGERRRVSIAAELLTRPPLLFLDEPTSGLDAGSALAVMRLVAAAARRGTAVVASLHQPRREVFDALGRALLLCAGEVAYFGPPRGVRDYF 214          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A7S0KCW1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KCW1_9CHLO)

HSP 1 Score: 209 bits (531), Expect = 1.500e-58
Identity = 118/237 (49.79%), Postives = 164/237 (69.20%), Query Frame = 1
Query:   79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGR-RVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGRPF---PEDQTHPADAMLTLTCRQDGGDL 774
            ILGPSGAGK++LLD+LAGR  +   + G  RV G   V ++ +RR++GYV Q+DVLPGT + +EHL+FHA+LR+P+  S E  R RV   +++LG+ ++ADS IGD+  RGLSGGE+RR+SIA EL+  P ++FLDEPTTGLD+  A +V+ +L  + T GTT+L S+HQPRP +  LLD+V++LS +G V Y G  A AS +F S+  PF   P    H AD ML +  +    D+
Sbjct:  470 ILGPSGAGKTTLLDILAGRATRTHSIRGDIRVNGQPIVSSQ-IRRLSGYVTQDDVLPGTATVHEHLLFHAKLRLPSGTSSEAIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSSLGTMGTTVLLSIHQPRPDIFRLLDRVLVLSGEGSVVYSGPSALASAHFASM--PFVTLPLADLHIADYMLDVVLKSSRSDV 703          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A4S3Q8_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q8_OSTLU)

HSP 1 Score: 201 bits (512), Expect = 4.590e-56
Identity = 114/235 (48.51%), Postives = 158/235 (67.23%), Query Frame = 1
Query:   79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGR-RVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDL 774
            +LGPSGAGK++LLD+LAGR      + G  RV G   V ++ +RR++GYV Q+DVLPG  + YEHL+FHA+LR+PAE   +D    V   +++LG+ ++ADS IGD+  RGLSGGE+RR+SIA EL+  P ++FLDEPTTGLD+  A +V+ +L G+   GTT+L S+HQPRP +  LLD+V++LS  G V Y G  A AS +F S+     P    H AD ML +  +    D+
Sbjct:  152 MLGPSGAGKTTLLDILAGRAPSTHVIRGDIRVNGQPMVSSQ-IRRLSGYVTQDDVLPGNATVYEHLLFHAKLRLPAETPLDDICRCVDSTMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSGDGSVVYSGPSALASAHFNSMSFVSLPSADLHIADYMLDVVLKSPRSDV 385          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A4S3Q9_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q9_OSTLU)

HSP 1 Score: 198 bits (504), Expect = 9.890e-56
Identity = 116/247 (46.96%), Postives = 159/247 (64.37%), Query Frame = 1
Query:   49 LSNVPSTMTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRV---GGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDL 774
            + +V   M  ++GPSGAGK++LLD L+GR       S   +   G  A+V  E +R V+GYV  EDVLPGT + YEHL+FHA+LR+PAE      R RV   +++LG+ ++ADS IGD+  RGLSGGE+RR+SIA EL+  P ++FLDEPTTGLD+  A +V+ +L G+   GTT+L S+HQPRP +  LLD+V++LS  G V Y G  A AS +F S+     P    H AD ML +  +    D+
Sbjct:   38 MDDVRGGMCALMGPSGAGKTTLLDRLSGRLSSNVYDSAGEIFMNGKVASV--EDMRAVSGYVIDEDVLPGTATVYEHLLFHAKLRLPAETRQSTIRKRVRATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSGDGSVVYSGPSALASAHFNSMSFVSLPSADLHIADYMLDVVLKSPRSDV 282          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A7S0KBP1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KBP1_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 2.210e-55
Identity = 117/240 (48.75%), Postives = 156/240 (65.00%), Query Frame = 1
Query:   70 MTGILGPSGAGKSSLLDLLAGR-KRKGEGVSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGRPF---PEDQTHPADAMLTLTCRQDGGDL 774
            M  I+GPSGAGK++LLD L+GR   K     G           E VR ++GYV  EDVLPGT + YEHLMFHA+LR+PA  S +  R RV   +++LG+ ++ADS IGD+  RGLSGGE+RR+SIA EL+  P ++FLDEPTTGLD+  A +V+ +L  + T GTT+L S+HQPRP +  LLD+V++LS +G V Y G  A AS +F S+  PF   P    H AD ML +  +    D+
Sbjct:  469 MCAIMGPSGAGKTTLLDRLSGRLSSKVYTTHGNVYINGKLASCEDVRSISGYVIAEDVLPGTATVYEHLMFHAKLRLPASTSSKTIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSSLGTMGTTVLLSIHQPRPDIFRLLDRVLVLSGEGSVVYSGPSALASAHFASM--PFVTLPLADLHIADYMLDVVLKSSRSDV 706          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A090M588_OSTTA (ABC transporter, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M588_OSTTA)

HSP 1 Score: 203 bits (517), Expect = 2.910e-55
Identity = 113/240 (47.08%), Postives = 160/240 (66.67%), Query Frame = 1
Query:   79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGR-RVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSK-GQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDLPALFR 789
            ILGPSGAGK++LLD+LAGR  +   + G  R+ G   V ++ +RR++GYV Q+DVLPG+ + YEHLMFHA+LR+P   +  D R RV   +++LG+ ++ADS IGD+  RG+SGGE+RR+SIA EL+  P ++FLDEPTTGLD+  A +V+ +L G+   GTT+L S+HQPRP +  LLD+V++LS  G V Y G  A AS +F S+          H AD ML +  +     +  + R
Sbjct: 1161 ILGPSGAGKTTLLDILAGRAPRTHIIRGDIRINGQPIVSSQ-IRRLSGYVTQDDVLPGSATVYEHLMFHAKLRLPGNTADTDVRKRVESTMQILGIEKLADSFIGDQFQRGISGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSSDGNVVYSGPSALASSHFHSMSFVSMSSSDLHIADYMLDVVLKSPRSQVKRMVR 1399          
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A7R9Y6A1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y6A1_MICPS)

HSP 1 Score: 200 bits (509), Expect = 3.810e-55
Identity = 110/237 (46.41%), Postives = 154/237 (64.98%), Query Frame = 1
Query:   79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSK-GQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDLPAL 783
            ILGPSGAGK++LLD+LAGR   G  ++G        +    +R V+GYVPQ+DVLPGT + +EHLMFHA LR+P     +  R+ V   +  LG++++A + IGD  TRGLSGGE+RR+S+A EL+  P ++FLDEPTTGLDA  A +V+ +L G+   G TIL S+HQPRP +  LLD+V+++S  G+V Y G   DA  +F S+   P   +  + AD ML +    D  D+ A+
Sbjct:   34 ILGPSGAGKTTLLDVLAGRPSPGHVITGDVALDGERMSNSELRHVSGYVPQDDVLPGTSTVWEHLMFHAALRLPGSVDRKRLRSVVWQTMRDLGITKLAHAHIGDAFTRGLSGGEKRRVSVATELLTSPGVMFLDEPTTGLDATNAAKVVDILAGLGALGVTILLSIHQPRPDIFRLLDRVLVMSSDGRVVYSGPSLDAEAHFESMRNVPRKPEAVNIADFMLDVVLSADDDDIDAM 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKD9_9PHAE1.330e-11075.98ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5KT00_9PHAE4.350e-10874.00ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D8LNV5_ECTSI4.570e-10875.40ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
A0A835Z9G6_9STRA9.840e-6257.48P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0KCW1_9CHLO1.500e-5849.79Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A4S3Q8_OSTLU4.590e-5648.51ABC(ABCG) family transporter: multidrug (Fragment)... [more]
A4S3Q9_OSTLU9.890e-5646.96ABC(ABCG) family transporter: multidrug (Fragment)... [more]
A0A7S0KBP1_9CHLO2.210e-5548.75Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A090M588_OSTTA2.910e-5547.08ABC transporter, conserved site n=2 Tax=Ostreococc... [more]
A0A7R9Y6A1_MICPS3.810e-5546.41Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9609contigH-paniculata_contig9609:1293..2682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.2
Seed ortholog evalue9.8e-100
Seed eggNOG ortholog2880.D8LNU0
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons3
Model size936
Cds size936
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9609.17309.1prot_H-paniculata_contig9609.17309.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9609 1293..2682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.948747-CDS-H-paniculata_contig9609:1292..17261622931191.948747-CDS-H-paniculata_contig9609:1292..1726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9609 1293..1726 -
1691481631.728206-CDS-H-paniculata_contig9609:1292..17261691481631.728206-CDS-H-paniculata_contig9609:1292..1726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9609 1293..1726 -
1622931191.9633162-CDS-H-paniculata_contig9609:2129..24731622931191.9633162-CDS-H-paniculata_contig9609:2129..2473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9609 2130..2473 -
1691481631.7382736-CDS-H-paniculata_contig9609:2129..24731691481631.7382736-CDS-H-paniculata_contig9609:2129..2473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9609 2130..2473 -
1622931191.976144-CDS-H-paniculata_contig9609:2524..26821622931191.976144-CDS-H-paniculata_contig9609:2524..2682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9609 2525..2682 -
1691481631.7491174-CDS-H-paniculata_contig9609:2524..26821691481631.7491174-CDS-H-paniculata_contig9609:2524..2682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9609 2525..2682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9609.17309.1

>prot_H-paniculata_contig9609.17309.1 ID=prot_H-paniculata_contig9609.17309.1|Name=mRNA_H-paniculata_contig9609.17309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
GTVPAAAASHHRSALSLSNVPSTMTGILGPSGAGKSSLLDLLAGRKRKGE
GVSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMP
AEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAE
LVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQV
LNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLT
CRQDGGDLPALFRRSSMAAAAHSAALAAISAAAAATVVPVRDKTVENNAT
GSPPTGPGGGGG
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mRNA from alignment at H-paniculata_contig9609:1293..2682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9609.17309.1 ID=mRNA_H-paniculata_contig9609.17309.1|Name=mRNA_H-paniculata_contig9609.17309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-paniculata_contig9609:1293..2682- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACCGTTCCTGCTGCTGCTGCTAGTCACCACAGGAGCGCCCTGAGCCT CTCCAACGTACCGAGCACTATGACCGGTATCCTGGGGCCTTCGGGAGCGG GGAAATCGTCGTTGCTCGATCTGCTGGCTGGCCGCAAGCGGAAAGGCGAA GGGGTATCGTCGGGGCGGTTATCGTTGGTGCTTGAAAGTGAGAGCGGGGG CGGGGGGAGGGGGCGACGGGTAGGGGGCGCGGCGGCGGTGGGGACTGAAG CCGTGAGACGAGTAGCCGGGTACGTGCCCCAGGAGGATGTGCTGCCCGGC ACCTTGTCGTGCTACGAGCATCTCATGTTTCACGCGAGGCTGCGCATGCC GGCAGAGGCAAGCTACGAGGATCGCAGGGCGAGGGTGTTATGGGTGATCG AGATGCTAGGGCTCTCGCGTGTTGCTGACTCGAGGATTGGAGACGAGCTT ACCAGGGGACTTTCCGGAGGGGAGAGGAGGCGACTGTCCATTGCGGCCGA ACTGGTGGCGCGCCCAGCGTTACTATTTTTGGACGAGCCTACAACCGGGC TAGGTGAGACCTTACGTTCACATTTGTTGTTGGGTATCGTGGAGAGTGGT GTAAGCAGGCTACACACGTCGTTGATTTTTCCGTGTCGTATGTTGGGTCA CGGTTCGTCACGGTTGTGGTGTGCGTTTTGTTTTTGTGCGTGTTGCCCTA GTGCGGATTAGGAGTGATTTGAGCATTGATTTGTATTCCGAAGTTGGTCC AGTTCTGATCTGTGTTTTTTTTCCCTGCGCGCGACAACAGGCTGCCTTTT GCGCCGTTGCGTCGCAGCAGTTACAACACTATTGTTGAACACACAAAAGG CATATCAAAAACGAACAAATCCCGATTCCCTGTATCGACGGTCAACCGTG TTTAAAAATATATATCTTATATACTCACATCCCGTGGGGAATGCATAAAA ACGCAGACGCGGCGACGGCGCTTCGCGTAATGGTGCTCCTCCGAGGCGTG GCCACGCGGGGCACCACGATCCTCTGCAGCCTTCACCAGCCCAGGCCTCA AGTCCTCAACTTGCTCGACAAGGTCATGCTCCTTTCAAAAGGCCAGGTCG CGTACTTCGGCGCCCCCGCCGACGCCTCCCGCTACTTCTTCTCCGTCGGT CGCCCTTTTCCGGAGGACCAGACCCACCCGGCCGACGCAATGCTTACTCT CACCTGTCGACAGGACGGCGGCGACTTGCCGGCGTTATTCCGCCGGTCCT CTATGGCGGCCGCGGCTCACTCCGCCGCCTTGGCTGCCATTTCGGCTGCT GCTGCTGCTACTGTTGTGCCGGTTCGGGATAAAACTGTTGAAAACAATGC CACTGGTTCGCCGCCCACGGGGCCCGGGGGCGGAGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9609:1293..2682-

>mRNA_H-paniculata_contig9609.17309.1 ID=mRNA_H-paniculata_contig9609.17309.1|Name=mRNA_H-paniculata_contig9609.17309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig9609:1293..2682- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACCGTTCCTGCTGCTGCTGCTAGTCACCACAGGAGCGCCCTGAGCCT
CTCCAACGTACCGAGCACTATGACCGGTATCCTGGGGCCTTCGGGAGCGG
GGAAATCGTCGTTGCTCGATCTGCTGGCTGGCCGCAAGCGGAAAGGCGAA
GGGGTATCGGCACCGTTCCTGCTGCTGCTGCTAGTCACCACAGGAGCGCC
CTGAGCCTCTCCAACGTACCGAGCACTATGACCGGTATCCTGGGGCCTTC
GGGAGCGGGGAAATCGTCGTTGCTCGATCTGCTGGCTGGCCGCAAGCGGA
AAGGCGAAGGGGTATCGGGGCGACGGGTAGGGGGCGCGGCGGCGGTGGGG
ACTGAAGCCGTGAGACGAGTAGCCGGGTACGTGCCCCAGGAGGATGTGCT
GCCCGGCACCTTGTCGTGCTACGAGCATCTCATGTTTCACGCGAGGCTGC
GCATGCCGGCAGAGGCAAGCTACGAGGATCGCAGGGCGAGGGTGTTATGG
GTGATCGAGATGCTAGGGCTCTCGCGTGTTGCTGACTCGAGGATTGGAGA
CGAGCTTACCAGGGGACTTTCCGGAGGGGAGAGGAGGCGACTGTCCATTG
CGGCCGAACTGGTGGCGCGCCCAGCGTTACTATTTTTGGACGAGCCTACA
ACCGGGCTAGGGGGCGACGGGTAGGGGGCGCGGCGGCGGTGGGGACTGAA
GCCGTGAGACGAGTAGCCGGGTACGTGCCCCAGGAGGATGTGCTGCCCGG
CACCTTGTCGTGCTACGAGCATCTCATGTTTCACGCGAGGCTGCGCATGC
CGGCAGAGGCAAGCTACGAGGATCGCAGGGCGAGGGTGTTATGGGTGATC
GAGATGCTAGGGCTCTCGCGTGTTGCTGACTCGAGGATTGGAGACGAGCT
TACCAGGGGACTTTCCGGAGGGGAGAGGAGGCGACTGTCCATTGCGGCCG
AACTGGTGGCGCGCCCAGCGTTACTATTTTTGGACGAGCCTACAACCGGG
CTAGACGCGGCGACGGCGCTTCGCGTAATGGTGCTCCTCCGAGGCGTGGC
CACGCGGGGCACCACGATCCTCTGCAGCCTTCACCAGCCCAGGCCTCAAG
TCCTCAACTTGCTCGACAAGGTCATGCTCCTTTCAAAAGGCCAGGTCGCG
TACTTCGGCGCCCCCGCCGACGCCTCCCGCTACTTCTTCTCCGTCGGTCG
CCCTTTTCCGGAGGACCAGACCCACCCGGCCGACGCAATGCTTACTCTCA
CCTGTCGACAGGACGGCGGCGACTTGCCGGCGTTATTCCGCCGGTCCTCT
ATGGCGGCCGCGGCTCACTCCGCCGCCTTGGCTGCCATTTCGGCTGCTGC
TGCTGCTACTGTTGTGCCGGTTCGGGATAAAACTGTTGAAAACAATGCCA
CTGGTTCGCCGCCCACGGGGCCCGGGGGCGGAGGGGGGACGCGGCGACGG
CGCTTCGCGTAATGGTGCTCCTCCGAGGCGTGGCCACGCGGGGCACCACG
ATCCTCTGCAGCCTTCACCAGCCCAGGCCTCAAGTCCTCAACTTGCTCGA
CAAGGTCATGCTCCTTTCAAAAGGCCAGGTCGCGTACTTCGGCGCCCCCG
CCGACGCCTCCCGCTACTTCTTCTCCGTCGGTCGCCCTTTTCCGGAGGAC
CAGACCCACCCGGCCGACGCAATGCTTACTCTCACCTGTCGACAGGACGG
CGGCGACTTGCCGGCGTTATTCCGCCGGTCCTCTATGGCGGCCGCGGCTC
ACTCCGCCGCCTTGGCTGCCATTTCGGCTGCTGCTGCTGCTACTGTTGTG
CCGGTTCGGGATAAAACTGTTGAAAACAATGCCACTGGTTCGCCGCCCAC
GGGGCCCGGGGGCGGAGGGGGG
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