mRNA_H-paniculata_contig96.17304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig96.17304.1
Unique NamemRNA_H-paniculata_contig96.17304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: D7FZS1_ECTSI (D-aminoacyl-tRNA deacylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS1_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 1.860e-77
Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQ-----------TVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSEM 734
            MR V+QRVK ASV V+ +            VSEIGKG++CL+GV +GD    A+WLCKQI+ AKLFEGM E NADKRWRS+VKQNGF++LLVSQFTLNGRVC KGKVDFTGSMPPAEA +FY RFV MV+++HAP+LVK+GVFGAKMEVSLVNDGP+TV VDS EM
Sbjct:    1 MRVVVQRVKRASVAVEHKDGDGTSSEPSSVVSEIGKGILCLVGVKDGDEKGHAEWLCKQIVTAKLFEGMSEANADKRWRSNVKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPAEAREFYSRFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEM 166
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: A0A7J7MM04_9MAGN (D-aminoacyl-tRNA deacylase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MM04_9MAGN)

HSP 1 Score: 157 bits (398), Expect = 3.590e-44
Identity = 79/164 (48.17%), Postives = 112/164 (68.29%), Query Frame = 3 
Query:  246 RHILKRNRMRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSEMT 737
            R +L+   MRAV+QRV +ASV V+E+TVSEIG GLV L+GVHE D    A+++C+++L  +LF     E   + W  +V Q  ++VLLVSQFTL G + K  K DF  +MPP  A+ FY   V+    S+ P+ VK+GVFGA M+V+LVN GP+T+ +DSS+++
Sbjct:   22 RGVLQIRNMRAVVQRVASASVEVEERTVSEIGPGLVVLVGVHESDAEADAEYICRKVLNMRLFNN---ETTGRAWDQNVMQRNYEVLLVSQFTLYG-IMKGNKPDFHVAMPPQTAKPFYASLVEKFRKSYTPEAVKDGVFGATMKVNLVNHGPVTMQLDSSQLS 181
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: A0A7S2V4R2_9STRA (D-aminoacyl-tRNA deacylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4R2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.180e-42
Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSE 731
            M+ VIQRVK+ASV V++  +S IGKG +CL+G+HE DGP  A W+ KQI++ KLF G       K W+ ++ Q   ++L+VSQFTL G+V K+GK+DF  +M P  A ++Y RF+  ++       V +G FG  MEVSL+NDGPIT+T+DS E
Sbjct:    1 MKVVIQRVKSASVSVNDSQISCIGKGFLCLVGIHETDGPADADWMIKQIISCKLFPG----EDGKPWKRNISQIEGELLMVSQFTLYGKVYKRGKMDFHHAMSPDAAREYYSRFLDSLKEKTITGKVYDGAFGEIMEVSLLNDGPITITLDSFE 150
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: A0A6J1JZA6_CUCMA (D-aminoacyl-tRNA deacylase n=5 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JZA6_CUCMA)

HSP 1 Score: 151 bits (381), Expect = 5.210e-42
Identity = 77/152 (50.66%), Postives = 105/152 (69.08%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDS 725
            MRAV+QRV +ASV VD +TVSEIG GL+ LIGVH+ D    A+++C+++L  +LF     E+  K W  +V Q  ++VLLVSQFTL G + K  K DF  +MPP  A+ FY   V+    S+ P  +K+GVFGAKM+V+LVNDGP+T+ +DS
Sbjct:    1 MRAVVQRVASASVEVDGRTVSEIGPGLLVLIGVHDSDTDSDAEYICRKVLNMRLFPN---ESTSKAWDLNVMQKNYEVLLVSQFTLYG-ILKGNKPDFHVAMPPQTAKPFYSSVVERFGKSYKPDAIKDGVFGAKMKVNLVNDGPVTMQIDS 148
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: K3XMG8_SETIT (D-aminoacyl-tRNA deacylase n=11 Tax=PACMAD clade TaxID=147370 RepID=K3XMG8_SETIT)

HSP 1 Score: 152 bits (383), Expect = 5.600e-42
Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSEM 734
            MRAV+QRV +ASV V+ + VS IG GL+ L+GVHE D    A ++C+++L  +LF     EN  K W  SV Q  F+VLLVSQFTL G + K  K DF  +MPPA+A+ FY   V+  + S++   VK+GVFGA M+VSLVNDGP+T+ VDS  +
Sbjct:    1 MRAVVQRVLSASVEVEGRVVSAIGPGLLVLVGVHEADTDSDADYICRKVLNMRLFPN---ENTGKAWDQSVMQRNFEVLLVSQFTLYG-ILKGNKPDFHVAMPPAKAKPFYASLVEKFQRSYSADSVKDGVFGAMMKVSLVNDGPVTMQVDSPSL 151
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: V4MJH5_EUTSA (D-aminoacyl-tRNA deacylase n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MJH5_EUTSA)

HSP 1 Score: 150 bits (379), Expect = 1.410e-41
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSEMTT*ESGGSI 761
            MRAVIQRV ++SV VD + VSEIG GL+ LIG+HE D    A ++C+++L  +LF     E   K W  +V Q  + VLLVSQFTL G + K  K DF  +MPP +A+ FY   V+  + ++ P  VK+GVFGA M+VSLVNDGP+T+ +DSS+    E+  S+
Sbjct:    1 MRAVIQRVSSSSVTVDGRIVSEIGPGLLVLIGIHESDTDSDADYICRKVLNMRLFSN---ETTGKGWDQNVMQRNYGVLLVSQFTLYGFL-KGNKPDFHVAMPPEKAKPFYASLVEKFQKAYNPDSVKDGVFGAMMKVSLVNDGPVTMQLDSSQSNKNETNASV 160
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: A0A2D4BDE5_PYTIN (D-aminoacyl-tRNA deacylase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDE5_PYTIN)

HSP 1 Score: 150 bits (378), Expect = 1.560e-41
Identity = 78/154 (50.65%), Postives = 104/154 (67.53%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSE 731
            MR V+QRV  ASV VD + V +IGKGLVCL+G+   D  E A++ C+++L A+L+     +  D  W+SSV  NG++VLLVSQFTL G   +  K DF  +M PA A++FY  F   V A+H+   V  GVFGA MEVSLVNDGP+T+T+DS +
Sbjct:    1 MRVVLQRVTGASVRVDGEVVGQIGKGLVCLVGITREDTEEDAEFCCRRLLNARLWP----DEKDTAWKSSVVSNGYEVLLVSQFTLYGYF-QGNKPDFHLAMAPAPAKEFYHAFCDRVRAAHSADKVAEGVFGAMMEVSLVNDGPVTMTIDSRD 149
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: A0A7S3CYW7_9EUKA (D-aminoacyl-tRNA deacylase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CYW7_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 2.750e-41
Identity = 79/154 (51.30%), Postives = 107/154 (69.48%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKG-KVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSS 728
            MRAV+QRVKNASV+VD + +SEIGKGL  L+G+ E D  + A+ + ++IL  + F    + ++ K W  SVK  G +VLLVSQFTL G+   KG K+DF  +M   +AE+ +  FVQ V+  HAP+LVK G FGA M+VSLVNDGP+T+  DS+
Sbjct:    1 MRAVVQRVKNASVVVDGEVISEIGKGLCVLVGIKEDDTKDDAEMIRRRILTTRFFP---DPDSGKMWAKSVKDLGLEVLLVSQFTLYGK--NKGTKIDFHRAMAGHKAEEEFEHFVQSVKNDHAPELVKEGKFGAMMDVSLVNDGPVTMEYDSA 149
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: A0A3B6GU17_WHEAT (D-aminoacyl-tRNA deacylase n=9 Tax=Triticeae TaxID=147389 RepID=A0A3B6GU17_WHEAT)

HSP 1 Score: 150 bits (378), Expect = 3.130e-41
Identity = 78/155 (50.32%), Postives = 103/155 (66.45%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSEM 734
            MRAV+QRV +ASV V+ Q VS IG GL+ L+GVHE D    A ++C+++L  +LF     E   K W  SV Q  F+VLLVSQFTL G + K  K DF  +MPPA+A+ FY   V+  + S+    VK+G+FGA M+VSLVNDGP+T+ VDS  +
Sbjct:    1 MRAVVQRVLSASVEVEGQVVSAIGPGLLVLVGVHEADTSSDADYICRKVLNMRLFTN---EKTGKAWDQSVMQRNFEVLLVSQFTLYG-ILKGNKPDFHVAMPPAKAKPFYASLVEKFQKSYKTDSVKDGIFGAMMKVSLVNDGPVTMQVDSPSL 151
[Close]
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Match: UPI0009E1FE6C (D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E1FE6C)

HSP 1 Score: 149 bits (377), Expect = 3.270e-41
Identity = 81/169 (47.93%), Postives = 113/169 (66.86%), Query Frame = 3 
Query:  270 MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQILAAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTGSMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTVDSSEMTT*ESGGSIS-RTA 773
            MRA++QRV +A V V+ + VSEIG GL+ L+G+HE DG   A ++C+++L  +LF     E + K W  SV Q  F VLLVSQFTL G + K  K DF  +MPP +A++FY   V+    S+   +VK+G+FGA M+V+LVNDGP+T+ +DSS+  T  S G+I  RTA
Sbjct:    1 MRAIVQRVLSAGVEVEGRLVSEIGPGLLVLVGIHESDGEADADYICRKVLNMRLFPN---EKSGKAWDQSVMQRNFGVLLVSQFTLYG-ILKGNKPDFHVAMPPNKAKEFYASLVEKFRKSYTADVVKDGIFGAMMKVNLVNDGPVTMQLDSSQ--TRNSNGAIEDRTA 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig96.17304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZS1_ECTSI1.860e-7770.48D-aminoacyl-tRNA deacylase n=1 Tax=Ectocarpus sili... [more]
A0A7J7MM04_9MAGN3.590e-4448.17D-aminoacyl-tRNA deacylase n=1 Tax=Kingdonia unifl... [more]
A0A7S2V4R2_9STRA1.180e-4248.70D-aminoacyl-tRNA deacylase n=1 Tax=Fibrocapsa japo... [more]
A0A6J1JZA6_CUCMA5.210e-4250.66D-aminoacyl-tRNA deacylase n=5 Tax=Cucurbita TaxID... [more]
K3XMG8_SETIT5.600e-4250.97D-aminoacyl-tRNA deacylase n=11 Tax=PACMAD clade T... [more]
V4MJH5_EUTSA1.410e-4148.17D-aminoacyl-tRNA deacylase n=2 Tax=Eutrema salsugi... [more]
A0A2D4BDE5_PYTIN1.560e-4150.65D-aminoacyl-tRNA deacylase n=1 Tax=Pythium insidio... [more]
A0A7S3CYW7_9EUKA2.750e-4151.30D-aminoacyl-tRNA deacylase n=1 Tax=Palpitomonas bi... [more]
A0A3B6GU17_WHEAT3.130e-4150.32D-aminoacyl-tRNA deacylase n=9 Tax=Triticeae TaxID... [more]
UPI0009E1FE6C3.270e-4147.93D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Phalaenopsis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig96contigH-paniculata_contig96:48768..53077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue7.7e-61
Seed eggNOG ortholog2880.D7FZS1
Preferred nameDTD1
KEGG koko:K07560,ko:K13117
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006450,GO:0006520,GO:0006551,GO:0006552,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0019478,GO:0019752,GO:0034641,GO:0034660,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046416,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097358,GO:0106026,GO:0106074,GO:0140098,GO:0140101,GO:1900828,GO:1900829,GO:1900831,GO:1900832,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.D-tyrosyl-tRNA(Tyr) deacylase activity
EggNOG OGsCOG1490@1,KOG3323@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko03016,ko03041
Exons2
Model size899
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig96.17304.1prot_H-paniculata_contig96.17304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig96 48924..52808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.3019273-UTR-H-paniculata_contig96:48767..489231622931191.3019273-UTR-H-paniculata_contig96:48767..48923Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 48768..48923 -
1691481631.458869-UTR-H-paniculata_contig96:48767..489231691481631.458869-UTR-H-paniculata_contig96:48767..48923Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 48768..48923 -
1622931191.4002078-UTR-H-paniculata_contig96:52808..530771622931191.4002078-UTR-H-paniculata_contig96:52808..53077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 52809..53077 -
1691481631.4867382-UTR-H-paniculata_contig96:52808..530771691481631.4867382-UTR-H-paniculata_contig96:52808..53077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 52809..53077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.3308315-CDS-H-paniculata_contig96:48923..491481622931191.3308315-CDS-H-paniculata_contig96:48923..49148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 48924..49148 -
1691481631.4697778-CDS-H-paniculata_contig96:48923..491481691481631.4697778-CDS-H-paniculata_contig96:48923..49148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 48924..49148 -
1622931191.3659654-CDS-H-paniculata_contig96:52559..528081622931191.3659654-CDS-H-paniculata_contig96:52559..52808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 52560..52808 -
1691481631.4783337-CDS-H-paniculata_contig96:52559..528081691481631.4783337-CDS-H-paniculata_contig96:52559..52808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 52560..52808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig96.17304.1

>prot_H-paniculata_contig96.17304.1 ID=prot_H-paniculata_contig96.17304.1|Name=mRNA_H-paniculata_contig96.17304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MRAVIQRVKNASVIVDEQTVSEIGKGLVCLIGVHEGDGPEQAQWLCKQIL
AAKLFEGMGEENADKRWRSSVKQNGFDVLLVSQFTLNGRVCKKGKVDFTG
SMPPAEAEDFYGRFVQMVEASHAPQLVKNGVFGAKMEVSLVNDGPITVTV
DSSEMTT*
back to top

mRNA from alignment at H-paniculata_contig96:48768..53077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig96.17304.1 ID=mRNA_H-paniculata_contig96.17304.1|Name=mRNA_H-paniculata_contig96.17304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4310bp|location=Sequence derived from alignment at H-paniculata_contig96:48768..53077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGGGGGCTTGCAATAGGAGGCTCTTTCGCCAAGTGCAGTAACTTGG
AGCGTGAAGAGTACGACACTTCCACACAGCTTCTGCTTCAGGAACGATTT
ATCCCTTCTCCCCTCCCCCCTAATTTAGTGTTTGCCTGCTTGGGCCGTTT
CAGCCGCGAAACGTGTGCTGTGCTCGCTGTCTGTCACAATTGAGGAAGGG
CACACCATACATAAATCGTGCGACCCGGCCAGCTGAAGCTCCTGTCGTCA
TATACTCAAACGGAACAGGATGCGAGCGGTTATTCAAAGAGTTAAAAACG
CAAGCGTCATCGTGGACGAGCAAACAGTGAGCGAGATAGGCAAGGGTCTA
GTCTGCCTGATCGGTGTCCATGAAGGAGACGGGCCAGAACAAGCACAGTG
GCTGTGCAAGCAAATACTGGCGGCGAAGTTGTTCGAGGGCATGGGGGAGG
AGAACGCGGATAAGCGATGGAGGTCCAGCGTAAAGCAGAACGGTTTCGAC
GTCCTTTTGGTATCACAGGCAAGATGCGGAGAAAAAGAGAGCGACCAATA
GTTACAACAAACATAAGTTGATACCGTGCAGTCTACAGTCTTGTATTTTC
GCAGTCTCTTGTCAGGTATTATGGTGGAGGGCGCACTCCCTACTGTATTG
TATATCTGTACTATGCCGCGAACGGTTTCGGATAAATACATATATGGATG
AGTTCAGAGTAAATGTTGTTGATTGATTCTATAGATCCATGTAGGGGTGA
GATGAACACGGCTGGTAAGCCGGTCAGTGATGGAGGTAGAGTATCGATGA
ACGGACCATCTCGAAGAGAAAGAGTGCACCAGGAGCGCACAATCCAGAAG
GGCGGCGCAACATGTTATCCCGAGAGAACAATCCCAGGAACGTCCAATAG
CTCAAAGCACGGTTTCGGTATGTAACCTACACGCCATCGCCCGATAAAAA
GGATAGCAGCTTACCCGGACAAGGACACAATAGCACTAAGCTACAACTGA
TGGCACAAGCAATCACACAGACATATGTCTTTCCTCGGCATAAGGGTTAT
TTCTGCCATTCCTGATGTATATAATTTTTCTCACCACAGGCATGGCAGCA
CGATGCCCCTACGGTGGAAGACGGCGAGGGCGTACTGTGTCCCATCCTTG
ACGCGTCCGTGCCAACATATCGCAGTAGTGGTCATTGAAGCAGTACAAAA
AGTTCAGTGCAGAGCAAGAGCCGGTCTTGCCGTCTTCGTAGGACCTTCCT
CTCTTCTTGGAGGATCGGTAGGACTGAGCCTGGAACAATCACGGCGCGTC
GCTATGCTATGAGCCCAGAATTTATGGTGCCGACCTTCGTCATTCGCAGT
GAGTCCCTATTTCATGTGTTCGCGCAAGGGGGTGTGATGGTGGTCTGTCA
GTTTCAGTGGGTCGGCAGTTGTCTTCCTTAACTTACGAAGGATTGCTTCG
GTCGTCCGGCGAGCGGCCATGTCGCAGATATTTGCTCCACGTTTTAAATG
CTGAAAATGAAGGACGAAATATTACACCGAATGATATCGAAGTGGGCATG
GATTGATCCGCAGTTCGTTTACACTGTTTATTCGAGTTTATCATCACTAG
AGAAGGACGAAACCGACGGCGAGCCGGAGCCAACCCAAGCTGGCTAGATT
ACTAGCTGTGCTGCGTTAGGCGTGCAGCGCTGAGAGTTTTCGTTAGATAC
ATGGCTTACTAAAGGCAACATCTATGCCCTAGCTGCAGAAAGTTGAATTA
AAATCAATTGTGACTCCAACATTGCAAACGACGCAACACGATTCCACAAC
TATTTCACAGTAACCGCCCTTAAAAACTATTATCAACATGAGGGAGAAAC
TTTGGACAATACGAAAATCTCAGGGGTTTAGACCTGTCCGATTGCTCACT
GATCTGGTCGGCCTTGCCGGCGCAAAATCGACTCGGGCCGAGAAGCTACC
ACCGATTGATCATGAACAGGTGTGCCAGACATGTAGTCTGACAGATAGGC
CTCGGCGTACGTTAGTTCTGTCTTGAGAAATACACTTCACTGAAATATTT
TGTTGTCACTGTGGGCATAGTTATGTTGCAGTTACGGAAACTTTGTTACC
GTTCGGGATATTAGAGAGTTCGGTAAAGAAAATGTCGACCTAGGATTGGA
CCTAGGTTGAGGAAGTTTCCTAGGTCCAAAACGTTCGTGAACGTTCCGAA
TATTCTTAGGTTTTACATGCGGCGGAACCGGATATGACGTGTCAAACTCG
TGAACAGGTACAATTGATGACGTGTGTGCGTGTGTAGGTGAGCCAAGAAT
GAATGAGTGAACTATTAATCAAATAGTTTGAGTTTGGTGCAGAGCATTAC
ACGAGACGACTCAGAAAAAAGCTACTGATGATCAGTTTTGGTATCAAATT
AAACCTGACCATGCCTGATTCGATATCACTAGCCCAACTGCCCGCCCCCA
TCCTCACAACATCAATAACGGTACACTGTTATTTGCAGTTGTACAGCCAG
TAGTACACGATGATTTTTACCCCATACTTGTTTGTAGACGGACACCTGCA
GTAACTGAGAGACGAGATGGGTGCGCTTCCATTGACACAGATGGCTGCGA
ATGACTGCACTCGTACACGGCGCTACTGCATACCACCGCACTAGTTCACT
ATCCTCTTGTGACCACGAATACTCCTCCCTGAAATGACGAATTAACACAT
AGATGGGCAGCACTGAGTGACTGTCGTTTTTGTAGTGATTGTCTGTACAG
ACGGGCAGTGTACTCGTATTTATACAATGTCTCAATTCACGCAGTTGCAG
CCAGATACTGTCGCTTGAAATGTGCCGCTTCGTAATCCTAGCTTGTGCGA
CACCAAAATTCAATCTAGGATAAAAGTAACACCCTAGCTCAATTTTCCTG
GCTCCAAGTGCTCAGGGTGCCGACCTGAGAAAAAATTAGGGAAAAATGTC
ATATATCACGCCAAAATCCTGAACCTAGGTTCAATCCTAAGTCCATTTTT
TTTGCCGAAGCTGTCTATTATGCTTGTGGTTAGGCCAATAAAGCCAGTGG
CAGGCACTGTTGCCATCGACTAAAGTCCCACCGGGCCAACTAGCCACCAG
CGTCGCTACTAAACTGTCCACAGCCAACCGGCCGATAGACCAATGGCACG
TGTGCCGTACAGGTATAGCTGCCGTAGACCCTGAAAATACCACATTTAGG
GACATAATGTCATTTCAAGTGATAGTCGCGACATTGAAGTAGCGGTTTAA
ACATGTAAATACAGCCGAGACAGTATGCATCGCAATTCATTGATGGAAAC
ACAAAAATGTAGATTTTGACAGACAATCGAAAATGTCTGATTGGAAACGA
TGGAAAATATATTATTTTAAAGACAAAACGAACTGAGTGCATCGTGTTTG
CTAGTACTCGTGGTTGTGATGTTGACCGCCTTCTATTGTAGCTCAGCGCA
TCCACACACGAAGATGGATGAGTGCCGGGTCCAATCCCAGCGACGTATGT
CAGCCCTCAGTCTAGACTGCAGTATTCGTTGACGATTGTCACTCCGCCGA
TTGACCCAAAACATCGTGGGTCACCCCGGATCCTGGAGAATACAAGTTGA
GAAATGAACGATCACTCATGACTCGACTGAATAAGCCACGCTGCAAAAAT
CTGTACAATTATTTAAATAGTGAGTTCAAGGTCTCACAGCCTCCTTGCTG
TCGTTGACGAGGTTGCTCTTCTACCCCATATCGATATCCGATGTACATTT
TCTTGAAAATGCACGAATATTATTCGAAAAACAGCACTCTCTCTACCTGA
ACCCTCATCAACTCCCCGCCCTCTCGAGTATGCGTGGCTAATGATTTAAC
AGCCAAGGCCAGCAGGCATACACAACTTGAGCACGCCCCCCGTCCTCCCT
ACCCCTTCGCTCTTTCTCACGCCGCGCAGTTCACCCTGAATGGACGAGTG
TGTAAAAAGGGCAAAGTTGACTTCACGGGCTCGATGCCCCCCGCAGAAGC
CGAAGACTTTTACGGGCGATTTGTACAAATGGTGGAGGCTAGCCATGCTC
CACAACTTGTGAAGAATGGGGTTTTTGGAGCCAAGATGGAAGTATCTTTG
GTAAATGATGGCCCTATAACAGTCACTGTGGACTCCAGCGAAATGACGAC
CTAAGAGAGTGGAGGTAGTATCTCGAGGACAGCCCCAAGAGGTTAGCGGC
GCGGGTGGGATAGCGCGATGTCATCTATCGGCAATGTTTGGTTAATTCAT
CAGCACCCATATGTTGACGTGTATTGATAATATATTTTGATCGTCGTGTT
TCGCGTTCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig96:48768..53077-

>mRNA_H-paniculata_contig96.17304.1 ID=mRNA_H-paniculata_contig96.17304.1|Name=mRNA_H-paniculata_contig96.17304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig96:48768..53077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGCGGTTATTCAAAGAGTTAAAAACGCAAGCGTCATCGTGGACGA
GCAAACAGTGAGCGAGATAGGCAAGGGTCTAGTCTGCCTGATCGGTGTCC
ATGAAGGAGACGGGCCAGAACAAGCACAGTGGCTGTGCAAGCAAATACTG
GCGGCGAAGTTGTTCGAGGGCATGGGGGAGGAGAACGCGGATAAGCGATG
GAGGTCCAGCGTAAAGCAGAACGGTTTCGACGTCCTTTTGGTATCACAGA
TGCGAGCGGTTATTCAAAGAGTTAAAAACGCAAGCGTCATCGTGGACGAG
CAAACAGTGAGCGAGATAGGCAAGGGTCTAGTCTGCCTGATCGGTGTCCA
TGAAGGAGACGGGCCAGAACAAGCACAGTGGCTGTGCAAGCAAATACTGG
CGGCGAAGTTGTTCGAGGGCATGGGGGAGGAGAACGCGGATAAGCGATGG
AGGTCCAGCGTAAAGCAGAACGGTTTCGACGTCCTTTTGGTATCACAGTT
CACCCTGAATGGACGAGTGTGTAAAAAGGGCAAAGTTGACTTCACGGGCT
CGATGCCCCCCGCAGAAGCCGAAGACTTTTACGGGCGATTTGTACAAATG
GTGGAGGCTAGCCATGCTCCACAACTTGTGAAGAATGGGGTTTTTGGAGC
CAAGATGGAAGTATCTTTGGTAAATGATGGCCCTATAACAGTCACTGTGG
ACTCCAGCGAAATGACGACCTAATTCACCCTGAATGGACGAGTGTGTAAA
AAGGGCAAAGTTGACTTCACGGGCTCGATGCCCCCCGCAGAAGCCGAAGA
CTTTTACGGGCGATTTGTACAAATGGTGGAGGCTAGCCATGCTCCACAAC
TTGTGAAGAATGGGGTTTTTGGAGCCAAGATGGAAGTATCTTTGGTAAAT
GATGGCCCTATAACAGTCACTGTGGACTCCAGCGAAATGACGACCTAA
back to top