mRNA_H-paniculata_contig12751.1730.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12751.1730.1
Unique NamemRNA_H-paniculata_contig12751.1730.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A6H5K1D7_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 7.370e-28
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            VDAAIVRIMKARK LAHT+LMSELFSQVKFPA+  DLKKRIESLIERDYLERDP++PG YRYLA
Sbjct:  344 VDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 407
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: D7FQS5_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.990e-27
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            VDAAIVRIMKARK LAHT+LMSELFSQVKFPA+  DLKKRIESLIERDYLERDP++PG YRYLA
Sbjct:  687 VDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 750
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A7S0YK13_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YK13_9CRYP)

HSP 1 Score: 97.1 bits (240), Expect = 6.620e-24
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            VDAA+VR+MKARK+LAHTLL+SELF  +KFP +  DLKKRIESLIER+YLERD  QP +Y YLA
Sbjct:  115 VDAAVVRVMKARKSLAHTLLISELFKLLKFPVTPADLKKRIESLIEREYLERDKDQPTVYNYLA 178
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A7S0LG23_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LG23_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 8.530e-24
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            +DAAIVRIMKARK+L HTLLMSELF Q+KFP    DLKKRIESLI+R+YLERDP+    YRYLA
Sbjct:  140 IDAAIVRIMKARKSLTHTLLMSELFQQLKFPVKPADLKKRIESLIDREYLERDPNVSSGYRYLA 203
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A7S3REU1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3REU1_9SPIT)

HSP 1 Score: 101 bits (252), Expect = 1.290e-23
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            +DAAIVR+MKARKTLAH++LMSELF Q+KFP    DLKKRIESLI+R+YLERDP  P  YRYLA
Sbjct:  550 IDAAIVRVMKARKTLAHSILMSELFQQLKFPLKPADLKKRIESLIDREYLERDPKSPSTYRYLA 613
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: D5ACL2_PICSI (Cullin_Nedd8 domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ACL2_PICSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-23
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            +DAAIVRIMK RK L+HTLL++ELF Q+KFP    DLKKRIESLI+R+YLERD S P +Y YLA
Sbjct:   23 IDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA 86
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A210QEK5_MIZYE (Cullin-4A n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210QEK5_MIZYE)

HSP 1 Score: 92.8 bits (229), Expect = 2.610e-23
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            VDAAIVRIMK RKTL H LL+SEL++Q+KFP    DLKKRIESLI+RDY+ERD   P  Y Y+A
Sbjct:   23 VDAAIVRIMKTRKTLTHNLLISELYNQLKFPVKPADLKKRIESLIDRDYMERDKDNPNQYHYVA 86
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A835ZG50_9STRA (Cullin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG50_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.660e-23
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            VDAAIVRIMKARKTL+H LLMSEL +Q+KFPA   DLKKRIESLIERDYLERD   P MY YLA
Sbjct:  738 VDAAIVRIMKARKTLSHPLLMSELMAQLKFPAKPLDLKKRIESLIERDYLERDEDNPTMYNYLA 801
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BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A843VHG3_COLES (Cullin_Nedd8 domain-containing protein n=2 Tax=Liliopsida TaxID=4447 RepID=A0A843VHG3_COLES)

HSP 1 Score: 93.2 bits (230), Expect = 4.720e-23
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            VDAAIVRIMK RK L+HTLL++ELF Q+KFP    D+KKRIESLI+R+YLERD S P +Y YLA
Sbjct:   57 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADIKKRIESLIDREYLERDKSNPQIYNYLA 120
[Close]
BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Match: A0A7S4EYG7_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EYG7_CHRCT)

HSP 1 Score: 99.0 bits (245), Expect = 8.240e-23
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VDAAIVRIMKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPGMYRYLA 192
            +DAAIVRIMKARK L+HTLL+SELF+Q+KFP    DLKKRIESLI+R+YLERDP+Q   YRYLA
Sbjct:  406 IDAAIVRIMKARKALSHTLLLSELFTQLKFPLKAQDLKKRIESLIDREYLERDPAQAAGYRYLA 469
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12751.1730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1D7_9PHAE7.370e-2887.50CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
D7FQS5_ECTSI2.990e-2787.50CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S0YK13_9CRYP6.620e-2473.44Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0LG23_9EUKA8.530e-2475.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3REU1_9SPIT1.290e-2375.00Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
D5ACL2_PICSI1.300e-2370.31Cullin_Nedd8 domain-containing protein n=1 Tax=Pic... [more]
A0A210QEK5_MIZYE2.610e-2368.75Cullin-4A n=3 Tax=Pectinidae TaxID=6566 RepID=A0A2... [more]
A0A835ZG50_9STRA4.660e-2379.69Cullin family-domain-containing protein n=1 Tax=Tr... [more]
A0A843VHG3_COLES4.720e-2370.31Cullin_Nedd8 domain-containing protein n=2 Tax=Lil... [more]
A0A7S4EYG7_CHRCT8.240e-2375.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12751contigH-paniculata_contig12751:5434..5628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FQS5
KEGG koko:K10609
KEGG Pathwayko03420,ko04120,map03420,map04120
KEGG ModuleM00385,M00386
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0080008,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2167@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121,ko04147
Exons1
Model size195
Cds size171
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.1389194-UTR-H-paniculata_contig12751:5433..54571622928997.1389194-UTR-H-paniculata_contig12751:5433..5457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12751 5434..5457 +
1691480695.6449769-UTR-H-paniculata_contig12751:5433..54571691480695.6449769-UTR-H-paniculata_contig12751:5433..5457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12751 5434..5457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.156359-CDS-H-paniculata_contig12751:5457..56281622928997.156359-CDS-H-paniculata_contig12751:5457..5628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12751 5458..5628 +
1691480695.663789-CDS-H-paniculata_contig12751:5457..56281691480695.663789-CDS-H-paniculata_contig12751:5457..5628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12751 5458..5628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12751.1730.1prot_H-paniculata_contig12751.1730.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12751 5458..5628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12751.1730.1

>prot_H-paniculata_contig12751.1730.1 ID=prot_H-paniculata_contig12751.1730.1|Name=mRNA_H-paniculata_contig12751.1730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MKARKTLAHTLLMSELFSQVKFPASTTDLKKRIESLIERDYLERDPSQPG
MYRYLA*
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mRNA from alignment at H-paniculata_contig12751:5434..5628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12751.1730.1 ID=mRNA_H-paniculata_contig12751.1730.1|Name=mRNA_H-paniculata_contig12751.1730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig12751:5434..5628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATGCGGCAATCGTGAGGATCATGAAGGCACGCAAGACCCTCGCACA
CACGCTCCTGATGAGCGAGCTATTCTCGCAGGTCAAGTTCCCGGCCTCAA
CCACCGACCTGAAGAAGAGGATAGAGTCGCTGATCGAGCGAGACTACCTC
GAGCGAGACCCCAGCCAGCCCGGGATGTATAGGTACCTCGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12751:5434..5628+

>mRNA_H-paniculata_contig12751.1730.1 ID=mRNA_H-paniculata_contig12751.1730.1|Name=mRNA_H-paniculata_contig12751.1730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig12751:5434..5628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCACGCAAGACCCTCGCACACACGCTCCTGATGAGCGAGCTATT
CTCGCAGGTCAAGTTCCCGGCCTCAACCACCGACCTGAAGAAGAGGATAG
AGTCGCTGATCGAGCGAGACTACCTCGAGCGAGACCCCAGCCAGCCCGGG
ATGTATAGGTACCTCGCATGAATGAAGGCACGCAAGACCCTCGCACACAC
GCTCCTGATGAGCGAGCTATTCTCGCAGGTCAAGTTCCCGGCCTCAACCA
CCGACCTGAAGAAGAGGATAGAGTCGCTGATCGAGCGAGACTACCTCGAG
CGAGACCCCAGCCAGCCCGGGATGTATAGGTACCTCGCATGA
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