mRNA_H-paniculata_contig959.17293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig959.17293.1
Unique NamemRNA_H-paniculata_contig959.17293.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 6.910e-101
Identity = 153/185 (82.70%), Postives = 169/185 (91.35%), Query Frame = 3 
Query:  567 QAAELWAKFCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQLVS 1121
            +A ELWA+FCKVRG+LVTPLELD PW+TA SLARVEGFGAHT +KLVGFIKASLPDWKKRIQNRN+NAPRG PSVLIVC GARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVML+KGCFPL VGTPGRM+ALAA+G+LR DS+AL+ILD+EKNVKGR V+DMDGV+ DTM  L+   RP LVS
Sbjct:  167 EAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 351
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.120e-48
Identity = 103/223 (46.19%), Postives = 138/223 (61.88%), Query Frame = 3 
Query:  540 GRRAIDATS----QAAE-LWAKFCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRI-----QNRNNNA--------PRGG-----------PSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQLVS 1121
            GR + DA++    QAA+ +W + C V G  +  +EL  PWV AE +A +E FGAHT+ KL G+IKA+LP+W+        ++R +          PRGG           P ++IVC+GARRC+EV+K L+ FRCQV+KLFAKHLK  EQ  ML++  FP+AVGTPGR+  LAA GA+      LL+LD  ++ KGR V+DM G  +D  ELL  H RP L S
Sbjct:  112 GRGSSDASALTAQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRR-YFPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRS 333
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK)

HSP 1 Score: 135 bits (341), Expect = 7.440e-34
Identity = 83/182 (45.60%), Postives = 108/182 (59.34%), Query Frame = 3 
Query:  573 AELWAKFCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQ---------NRNNNAP--RGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTME 1085
            A  WAK+  V G  +T LEL    V   +   V    A     LV F+KA +P WK ++Q          R   AP  RG P VL+VCAGARRCV ++K L  FRC V KLFAKH+KI+EQ+ +LKK C P+AVGTP R+  LA  G L  +S  L+I DM K+VK   ++D++GV +D M+
Sbjct:    9 ALFWAKYVGVMGGKLTDLELRPENVPEGAFLPV----AAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKK-CAPIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDLMD 185
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A2D4C5F1_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5F1_PYTIN)

HSP 1 Score: 121 bits (304), Expect = 1.320e-27
Identity = 67/175 (38.29%), Postives = 101/175 (57.71%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQL 1115
            + K RG  +T LE+    +T       +G G HTL  L  +++  +P WK   + +     +  P  LIVC+ A R VEV+KHL++FRC+V KLFA+H+K +EQ+  L     P+AVGTP R++ L    A+     + +ILDM K+ K   ++D+   +KDTMELL  +  P+L
Sbjct:  121 YIKHRGGQLTTLEIAEG-LTEHHFVAPKGLGKHTLQSLPLYMRHCVPTWKHDFRGKKIKYDKS-PIFLIVCSSALRAVEVLKHLSSFRCKVAKLFARHMKAKEQEDQLTLHFHPIAVGTPARLKKLLEMDAMSLQHTSHVILDMAKDKKNMTILDLKDTSKDTMELLQFYLLPRL 293
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A8K1CKQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL)

HSP 1 Score: 120 bits (302), Expect = 1.950e-27
Identity = 65/175 (37.14%), Postives = 100/175 (57.14%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQL 1115
            + K RG  +T LEL      +  +A   G G HTL  L  +++   P WK   + +     +     L++C+ A R VEV+KH  +F+C+V KLFAKH+K+E+Q++ L K   P++VGTPGR++ L    AL  +    + +DMEK+ K   ++++   AK+ MELL  H  PQL
Sbjct:  109 YIKQRGGQMTTLELAEGLAESHFVAPA-GLGKHTLPNLSLYMRHLRPAWKVDFKGKGKKYDKS-TYFLVICSSALRAVEVLKHFGSFKCKVAKLFAKHMKVEDQEIQLAKTFNPISVGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A6A3I4I1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.330e-27
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQL 1115
            + K RG  +T LEL    +T       +G G H L +L  +I   LP +KK    +     +  P  LI+C+ A RCV+V+KHLT F+C+V KLFAKHLK++EQ   L     P+AVGTP R++ L   GAL       +I DMEK+ K   V+++   A + M+LL  +  P L
Sbjct:  102 YTKHRGGQMTSLEL-ADGLTETHFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFVGKGKRRDKS-PYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLL 274
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A3M6VRI3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRI3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.160e-26
Identity = 70/175 (40.00%), Postives = 95/175 (54.29%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQL 1115
            + K RG  +T LEL      +  L    G G H L  L  +I   LP +K+    +     +  P  LI+C+ A RCVE++KHLT+F+C+V KLF KHLK + Q   L    FP+AVGTP R++ L   GAL       LI DMEK+ K   ++D+   A + M+LL  H  PQL
Sbjct:   99 YMKHRGGQMTSLELADGLNESHFLVPA-GLGKHKLELLPSYIHHLLPTYKRDFLGKGMRRDKS-PVFLILCSSALRCVELIKHLTSFKCRVAKLFGKHLKADTQAKQLTDNYFPIAVGTPARVKKLMEMGALSMKFTKRLIFDMEKDKKQLTLLDLKDTATEMMDLLQFHFLPQL 271
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A833WFM7_PHYIN (U3-containing 90S pre-ribosomal complex subunit n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFM7_PHYIN)

HSP 1 Score: 116 bits (290), Expect = 7.790e-26
Identity = 71/181 (39.23%), Postives = 99/181 (54.70%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQLVSLSTS 1133
            + K RG  +T LEL      A  +A  +G G H L  L  +I    P +K+    +     +  P  LI+C+ A RCVEV+KHLT+F+C+V KLFAKH+K EEQ   L     P+AVGTP R++ L    AL       +I DMEK+ K   V+++   A + M+LL  H  PQL   ++S
Sbjct:   99 YTKHRGGQMTSLELADGLNEAHFVAP-KGLGKHRLDLLPSYIHHLQPSFKRDFVGKGKRRDKS-PYFLILCSSALRCVEVIKHLTSFKCRVAKLFAKHMKAEEQAKQLAFNYLPIAVGTPARVKRLLEMDALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFHFIPQLNKEASS 277
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BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: A0A067BQF7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQF7_SAPPC)

HSP 1 Score: 115 bits (289), Expect = 8.660e-26
Identity = 63/181 (34.81%), Postives = 103/181 (56.91%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQLVSLSTS 1133
            + K  G+ +TP E+    +T      ++ FG HTL     F++A  P+WK   + +     R  P +LIVC+ A R VE+ K + +F+C V KLFAKHLK+EEQ  MLK+   P+A+GTPGR++ L    AL  +  + ++LDM  + K   ++++   +KDT++ +     P++ +   S
Sbjct:   92 YMKHYGDSLTPAEI-ADGLTESHFTVLKQFGKHTLESYTRFLRALCPEWKFLFRGKGIKDKRS-PLLLIVCSSALRAVEIGKAIASFKCHVAKLFAKHLKLEEQVEMLKR-FHPIAIGTPGRIKTLLEMKALSLECTSHVVLDMHLDSKNMSLLELKDTSKDTIDCIRESLLPRIAANKLS 269
[Close]
BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Match: H3H2I1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2I1_PHYRM)

HSP 1 Score: 112 bits (281), Expect = 1.330e-24
Identity = 68/175 (38.86%), Postives = 95/175 (54.29%), Query Frame = 3 
Query:  591 FCKVRGELVTPLELDRPWVTAESLARVEGFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAASGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQL 1115
            + K RG  +T LEL      A+ L    G G H L  L  +I   LP +K+    +     +  P  LI+C+ A RCVEV+KHLT F+C+V KLFAKH+K+ EQ   L K   P+AVGTP R++ L    AL       +I DMEK+ K   V+++     + ++LL  +  PQL
Sbjct:  105 YTKHRGGQMTSLEL------ADGL---NGLGKHKLELLPAYIHHLLPTFKRDFAGKGKRRDKS-PYFLILCSSALRCVEVIKHLTPFKCRVGKLFAKHMKVAEQATQLAKTYLPMAVGTPARVKKLLEMDALSLQHTTHVIFDMEKDKKQLTVLELKDTVTEMVDLLQFYFIPQL 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig959.17293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI26_ECTSI6.910e-10182.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSW0_9STRA4.120e-4846.19U3-containing 90S pre-ribosomal complex subunit-do... [more]
A0A7S3XUU3_HETAK7.440e-3445.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4C5F1_PYTIN1.320e-2738.29Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A8K1CKQ2_PYTOL1.950e-2737.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3I4I1_9STRA3.330e-2739.43Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A3M6VRI3_9STRA2.160e-2640.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A833WFM7_PHYIN7.790e-2639.23U3-containing 90S pre-ribosomal complex subunit n=... [more]
A0A067BQF7_SAPPC8.660e-2634.81Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
H3H2I1_PHYRM1.330e-2438.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig959contigH-paniculata_contig959:1826..6718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue9.1e-84
Seed eggNOG ortholog2880.D7FI26
Preferred nameCMSS1
KEGG koko:K11858,ko:K14784
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
EggNOG free text desc.U3-containing 90S pre-ribosomal complex subunit
EggNOG OGsKOG3089@1,KOG3089@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Exons5
Model size1371
Cds size1131
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.7937999-UTR-H-paniculata_contig959:1825..18991622931189.7937999-UTR-H-paniculata_contig959:1825..1899Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig959 1826..1899 +
1691481630.9095519-UTR-H-paniculata_contig959:1825..18991691481630.9095519-UTR-H-paniculata_contig959:1825..1899Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig959 1826..1899 +
1622931189.8875754-UTR-H-paniculata_contig959:6552..67181622931189.8875754-UTR-H-paniculata_contig959:6552..6718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig959 6553..6718 +
1691481630.9667022-UTR-H-paniculata_contig959:6552..67181691481630.9667022-UTR-H-paniculata_contig959:6552..6718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig959 6553..6718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.8138237-CDS-H-paniculata_contig959:1899..19781622931189.8138237-CDS-H-paniculata_contig959:1899..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 1900..1978 +
1691481630.9234858-CDS-H-paniculata_contig959:1899..19781691481630.9234858-CDS-H-paniculata_contig959:1899..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 1900..1978 +
1622931189.8318074-CDS-H-paniculata_contig959:3661..39451622931189.8318074-CDS-H-paniculata_contig959:3661..3945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 3662..3945 +
1691481630.9329333-CDS-H-paniculata_contig959:3661..39451691481630.9329333-CDS-H-paniculata_contig959:3661..3945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 3662..3945 +
1622931189.8445392-CDS-H-paniculata_contig959:4274..45571622931189.8445392-CDS-H-paniculata_contig959:4274..4557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 4275..4557 +
1691481630.9409277-CDS-H-paniculata_contig959:4274..45571691481630.9409277-CDS-H-paniculata_contig959:4274..4557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 4275..4557 +
1622931189.8605075-CDS-H-paniculata_contig959:5446..56641622931189.8605075-CDS-H-paniculata_contig959:5446..5664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 5447..5664 +
1691481630.94914-CDS-H-paniculata_contig959:5446..56641691481630.94914-CDS-H-paniculata_contig959:5446..5664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 5447..5664 +
1622931189.873762-CDS-H-paniculata_contig959:6285..65521622931189.873762-CDS-H-paniculata_contig959:6285..6552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 6286..6552 +
1691481630.9575253-CDS-H-paniculata_contig959:6285..65521691481630.9575253-CDS-H-paniculata_contig959:6285..6552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig959 6286..6552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig959.17293.1prot_H-paniculata_contig959.17293.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig959 1900..6552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig959.17293.1

>prot_H-paniculata_contig959.17293.1 ID=prot_H-paniculata_contig959.17293.1|Name=mRNA_H-paniculata_contig959.17293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp
MGDDLGDDWVASDLGSGDEETSAAASVTSKAIKNKEANAENSVKSGGKNK
AHASDAAAASTGGRKRGRSQLSPEGFEEDESDAEGDEVMAYGSEDEEKRL
AEEEAKRVKAEKKKQKLKALKAKHKEKKRQRLAEENEVNEGGGGGGDGGR
GKGEKGRRAIDATSQAAELWAKFCKVRGELVTPLELDRPWVTAESLARVE
GFGAHTLVKLVGFIKASLPDWKKRIQNRNNNAPRGGPSVLIVCAGARRCV
EVMKHLTAFRCQVVKLFAKHLKIEEQKVMLKKGCFPLAVGTPGRMQALAA
SGALRFDSAALLILDMEKNVKGRDVVDMDGVAKDTMELLTRHARPQLVSL
STSRDGEGKGVKEAKGNAGQLRIALY*
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mRNA from alignment at H-paniculata_contig959:1826..6718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig959.17293.1 ID=mRNA_H-paniculata_contig959.17293.1|Name=mRNA_H-paniculata_contig959.17293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4893bp|location=Sequence derived from alignment at H-paniculata_contig959:1826..6718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACATTCCATTCCTTCTTCGACACATTCGTTGCAGTTCTCGGATTGCA
GTTAGTGGGTAGGAGTGTTCAATCATGGGAGATGATCTAGGCGACGATTG
GGTGGCGAGTGATTTGGGCTCTGGTGATGAAGAAACTTCGGCTGCTGCAT
CAGGTAATTTTTAAACGACTCTCTCCGCTGCCCACGTACCCAACGATTCT
ACGCTGCTGTGGCTGCCTCCGTTGGTCTTCGTTTGTTTTCGTCAGTCTTT
AAACGGTATCCTACGTAGTGTTTTGCTTCTCCAGTCTCTATCAATTCAGC
ACCAGATTAAAGGAATGTAGATACTACAGAGATGTAAAGACTACTACCAC
AATAGTTGTTGACATCATATTTGTGCGATTGACACGTTGTGGTAACAAGC
TGAAATAGCGGATCCTCTATGTCGTCATACTCTGGCGTAATGACTCCATG
ACCAGCTGGCTATCTGTCGTATAGCAACGATGGCGGGGGCAAATCTTCTG
CACTGAGAAACACAGCTACAGGAGTAATATTCTTATTCTAATGTTCGCCT
GGGTCCCCATTTGCTTGCAATAATCAATAGTCACAGCATGAACACCATAC
ATCGTAATCTCTAGTCTCCACTTTGCTGTAGTCGCGGCTTTGTTTGTGTT
GCTGTTCGCCTGGTTGGGCTTGCTCTCTTTGGCGCGACACTCGGAGTGTT
ACCGCAGAAGTTGAGCATCGACGACAGACCTTACACAGGTAGGTAATATT
TTAGCGTGAAACCCGTCCCGTTTTCCTATGTGCTCGACCTTATCGTACCG
GTATAATCCAACGCCTCATGACATTTAAAAACGACTCCGCGATCTTGTAC
AAAAAGAAAACCTTTTCGCGTTCATCGATCGAGGACACGTAAATCAACAA
CGCAAAGAGTCGCACAGTTAGCCAAAGTTACTACAGTACGCCCATCCGTA
CAGACAGTCGACCTTTTACCAGTATACCTACACATATATATACAGCCCAC
GACACACATGCTCACCGGCTCGCTATCGCACCTTTGGTTTGTGCTATTGA
ACAAAAAGGCCTCATTACTGTTTGATACGAGTATATAAAGTGTTCCGAAA
TAGGTCACAACTAACACCCTACGAAGCGTAGATACATCGATTCTCGTCGG
AGTCTGTTTCGAAAGAAGAAATTTGACCCTAATTGTATATGTCGAGCTGC
AGGGGTTACTCTCAAGACCATGCCAATTCCCTGTCATCGCTGCATGTATT
TTCTGTACTGAACCGGCTGTTTGAACAGCGGTGTCTCTCTATTGCCGACT
TCATGTCACCGGCGTGGTTTTTCCGTATTTTTTTGGTATGGGGACTGAGC
GAAGATTTCGCGGAGACCGGTCACGGAACGGTTACCTGTTGTTGAAGCTT
ATGGTCATCGCGCGTTTGAGTCCATATATATATATATATATATTCAAAGA
CCTGTGGTGTCTGGTAATGCCCAACTTGCGCCAATTCAGCAATGTGTGCT
GCTTGCTAATCAACTGGAAAATAAGAGATATTACCTATCTTCTACTGCTT
ATACCCCAAAAGAAACAATCAGCGTTCGCCATCCTCCACTTTTGTAAGAT
ACTTGTAGCAGACAGGCCGCAGCTACACCAGTGGCGTGTACCTAACGCAG
ATCCCTCAAGCTGTTCGGTGTAACGGGGCACTTGGGAAAAAAACACTGGA
ATAGAGAATGGTCACCGCCACCATTCATCATCAGCAAAATCAATATTGTA
GAAATTCATAGGGATTCACGGACAATTTTTTACGCTGTATTTTGCAATGT
ATCTATTCACAACCGTCGCGTGCCGCAACTAACCAGTTACGTCTAAGGCC
ATCAAAAACAAGGAAGCTAACGCGGAAAACTCAGTTAAGAGCGGAGGAAA
AAACAAGGCCCATGCCTCCGATGCTGCCGCTGCCTCAACTGGGGGTAGAA
AGCGCGGGAGGTCACAGCTAAGCCCCGAAGGCTTCGAAGAAGATGAAAGC
GACGCAGAAGGGGACGAAGTAATGGCGTACGGGTCCGAAGACGAAGAAAA
GAGACTGGCAGAGGAGGAGGCGAAGCGAGTAAAGGCCGAAAAGAAGAAGC
AGAAGCTCAAGGCACTCAAGGTATTGTTATTTTCTTACTCTACCTCTCAT
TTTGGTGTGTCGACGTGTCTCATGTTTGGGAAGAAGAGCGCCTCGAAAAT
TCCATTCTATAGAGGCTTTTGTAGCTCCAGATCTCCTAGGCTGCTAAACA
GGAAACGGTATACTCGTACGCATATGAATTGCGATTCGGAGAATATTCCC
CGCTTCATACGTATCTTCGGTAGCGCTCCTTGCAGCGCAAAATACTATCT
CGTCGGCTGAACTGTAGCCGCCACGGCCTACAACACCACTCAGCGCTTTT
CACCCTTCTCGCCATTGCTGCCCGCCGTGCACCGAAACGTCTTGAACAGG
CTAAGCACAAAGAGAAGAAGAGACAGCGATTGGCAGAGGAAAACGAAGTG
AACGAAGGTGGCGGTGGCGGTGGCGACGGCGGCAGGGGAAAAGGGGAAAA
GGGCCGGCGGGCGATAGACGCTACGAGCCAGGCCGCCGAGCTGTGGGCCA
AGTTTTGTAAAGTGCGAGGCGAGTTGGTAACACCCTTGGAGCTTGACCGA
CCGTGGGTGACCGCGGAGTCGCTCGCACGCGTGGAGGGATTCGGGGCGCA
CACGCTAGTCAAGTTGGTGGGGTTCATTAAAGGTGCGTGAAGAACAACAA
GTCACCAAGTATGATGAAATTGAACAGCCCCTTCCCTTTCGATCTCTCTC
TCTCTCTCTCTCTCTCTCTGATATGGTTGATTCATACATATTTTTCTATG
AAAAAAGTGGTTGGCTGCTCAACCCTTTAGTAACTGAACGTTGTAAGGGC
CAAAGCAAGATTTGCTGACAATCGATCGTGAGTAATGAATACATGGATGT
AGTGCTACACCAGCTCTAGGCAATTGATATATACATCTCAGGTGCAAAAG
GAAGTCCTTTGTCTGCCGATTTAAGGACTTTTTACCTTGGATTTATGTAG
AGCACGTACCGTTCTGGGGTGCCACAAGCACATTACTTGAATAAAAAACA
TAAACATCATCCAGTGGATGTCTGATGAATCAGAATTACCAGTTAATTTG
CAAGTGTTCTCTATTCCAGCCGGAGTTAGTGGAATAGCGCAAAACACTGA
ATTTGTTGTTGAAATAGTATGTATACTTTCAGATAGATAATGCTTGCAGG
TTAACTGTTCGCAAATACGCAACGGTAGGTAGCAAGGTGCATTTGTAGAG
CACCACGGTGCGGCTAGAGTGGACACCACACTTCCCTGCGTTATTTTCCC
GCCCTGTGGTGGGGGCGTTGTGTACTTGTCTAAGCCATGCGCCGCGCATA
CACTGGCACACACTCACGAACGAGTGGCTGTTCCCTTGTGCCCATTTCCC
ATCCTTGATTTTTTGGCTATGATTCATAGGATCTCGTCCAATCAGATACT
CAATTTTATTTTTTATTTTTATGTTGTGTGGCTGCTTGTCGCCCCCCTGC
TGTTTTGTGCACATCGGTGACGGCGGGGGTCGGGGGGGGATGGATATCTG
TCTTGGACTTGCGATATTTAGCATCTTTGCCCGACTGGAAAAAGAGGATC
CAAAATCGGAACAACAACGCTCCAAGGGGAGGCCCGTCGGTACTGATCGT
GTGCGCGGGGGCGCGACGGTGCGTGGAGGTAATGAAGCATCTGACTGCGT
TTCGCTGCCAGGTGGTGAAGTTGTTTGCCAAGCACCTCAAGATTGAGGAG
CAAAAGGTGATGCTGAAGAAGGGCTGCTTCCCTTTGGCGGTGAGTCTCCT
ATCCGTGTGCCTCACTGTAGCTGTAGCTCGTGGATTAATCCTCTCTCTTC
CCCGCTGCGCACGTCACTTGCTTGAGATACTATTGCGCCGAATACTGTAT
TGTGCACACGATGTCATGAGTTTGTCCCGTGGTTTGGTGTACAGGAGGGA
GGCAATTCTCTTTCGAGATGAGATGCAGTTGTATTTGCGCATGCGGTATC
TCGGCTGCCCTTGGGTGTATTGTTTTTTCTGCGGTCGGAGCTCACGTTTT
TTATGCCTTGGTATTTCGAGAGTAGCGTAAATGTTGACGTCCTGCACAAA
TGAAAAGCATGCTGCGAATATTGTTTTCTGACCCCTCTCCCCCACACCTG
GCAACAATACGCGGCGATAGTCTTTGCCGAACCGATCGGGAGCAACTAAC
CCCCAACCTTTTTTGTGTTTTAATATCGAGAGATCTTGTATTATTATTAA
TAGCATCCAGCGTTCTAACCCCCCCCTGCTCGCGCGCCCCGCTCCGCCCT
GACCTGACCTGATCTGACCTGACCTGACCTGACCCAACCCGATCTGACCC
AACCCGACCTGATCCCCTTCTGCGAATCGGACCGACTCGTCACCGATTAA
AAACAAGCAGGTTGGCACACCCGGGCGCATGCAGGCACTGGCGGCATCGG
GCGCTCTGCGGTTTGACTCCGCAGCCTTGTTAATCTTGGACATGGAGAAA
AATGTGAAAGGGAGGGATGTTGTCGACATGGATGGCGTCGCGAAGGACAC
GATGGAATTGCTCACAAGGCACGCACGGCCGCAGTTAGTGTCGTTGTCGA
CGTCTAGGGATGGCGAGGGGAAAGGGGTGAAGGAGGCAAAAGGCAACGCT
GGTCAACTCAGGATAGCTCTCTATTGACGATGCTATGTCACAATGTTTTT
GTGTCTTTGAATAACCCTGATCTGCTCATTGTTGTTCAGGGCGAATCTTA
TTTCATGTCCTGTGCTCGCTGCCTGCTTTTGTTTCTCCCTAATCGGCATT
GGAATGAACAAGATTAAGATTTATGTGTGTATTATGATTATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig959:1826..6718+

>mRNA_H-paniculata_contig959.17293.1 ID=mRNA_H-paniculata_contig959.17293.1|Name=mRNA_H-paniculata_contig959.17293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig959:1826..6718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGATGATCTAGGCGACGATTGGGTGGCGAGTGATTTGGGCTCTGG
TGATGAAGAAACTTCGGCTGCTGCATCAGATGGGAGATGATCTAGGCGAC
GATTGGGTGGCGAGTGATTTGGGCTCTGGTGATGAAGAAACTTCGGCTGC
TGCATCAGTTACGTCTAAGGCCATCAAAAACAAGGAAGCTAACGCGGAAA
ACTCAGTTAAGAGCGGAGGAAAAAACAAGGCCCATGCCTCCGATGCTGCC
GCTGCCTCAACTGGGGGTAGAAAGCGCGGGAGGTCACAGCTAAGCCCCGA
AGGCTTCGAAGAAGATGAAAGCGACGCAGAAGGGGACGAAGTAATGGCGT
ACGGGTCCGAAGACGAAGAAAAGAGACTGGCAGAGGAGGAGGCGAAGCGA
GTAAAGGCCGAAAAGAAGAAGCAGAAGCTCAAGGCACTCAAGTTACGTCT
AAGGCCATCAAAAACAAGGAAGCTAACGCGGAAAACTCAGTTAAGAGCGG
AGGAAAAAACAAGGCCCATGCCTCCGATGCTGCCGCTGCCTCAACTGGGG
GTAGAAAGCGCGGGAGGTCACAGCTAAGCCCCGAAGGCTTCGAAGAAGAT
GAAAGCGACGCAGAAGGGGACGAAGTAATGGCGTACGGGTCCGAAGACGA
AGAAAAGAGACTGGCAGAGGAGGAGGCGAAGCGAGTAAAGGCCGAAAAGA
AGAAGCAGAAGCTCAAGGCACTCAAGGCTAAGCACAAAGAGAAGAAGAGA
CAGCGATTGGCAGAGGAAAACGAAGTGAACGAAGGTGGCGGTGGCGGTGG
CGACGGCGGCAGGGGAAAAGGGGAAAAGGGCCGGCGGGCGATAGACGCTA
CGAGCCAGGCCGCCGAGCTGTGGGCCAAGTTTTGTAAAGTGCGAGGCGAG
TTGGTAACACCCTTGGAGCTTGACCGACCGTGGGTGACCGCGGAGTCGCT
CGCACGCGTGGAGGGATTCGGGGCGCACACGCTAGTCAAGTTGGTGGGGT
TCATTAAAGGCTAAGCACAAAGAGAAGAAGAGACAGCGATTGGCAGAGGA
AAACGAAGTGAACGAAGGTGGCGGTGGCGGTGGCGACGGCGGCAGGGGAA
AAGGGGAAAAGGGCCGGCGGGCGATAGACGCTACGAGCCAGGCCGCCGAG
CTGTGGGCCAAGTTTTGTAAAGTGCGAGGCGAGTTGGTAACACCCTTGGA
GCTTGACCGACCGTGGGTGACCGCGGAGTCGCTCGCACGCGTGGAGGGAT
TCGGGGCGCACACGCTAGTCAAGTTGGTGGGGTTCATTAAAGCATCTTTG
CCCGACTGGAAAAAGAGGATCCAAAATCGGAACAACAACGCTCCAAGGGG
AGGCCCGTCGGTACTGATCGTGTGCGCGGGGGCGCGACGGTGCGTGGAGG
TAATGAAGCATCTGACTGCGTTTCGCTGCCAGGTGGTGAAGTTGTTTGCC
AAGCACCTCAAGATTGAGGAGCAAAAGGTGATGCTGAAGAAGGGCTGCTT
CCCTTTGGCGCATCTTTGCCCGACTGGAAAAAGAGGATCCAAAATCGGAA
CAACAACGCTCCAAGGGGAGGCCCGTCGGTACTGATCGTGTGCGCGGGGG
CGCGACGGTGCGTGGAGGTAATGAAGCATCTGACTGCGTTTCGCTGCCAG
GTGGTGAAGTTGTTTGCCAAGCACCTCAAGATTGAGGAGCAAAAGGTGAT
GCTGAAGAAGGGCTGCTTCCCTTTGGCGGTTGGCACACCCGGGCGCATGC
AGGCACTGGCGGCATCGGGCGCTCTGCGGTTTGACTCCGCAGCCTTGTTA
ATCTTGGACATGGAGAAAAATGTGAAAGGGAGGGATGTTGTCGACATGGA
TGGCGTCGCGAAGGACACGATGGAATTGCTCACAAGGCACGCACGGCCGC
AGTTAGTGTCGTTGTCGACGTCTAGGGATGGCGAGGGGAAAGGGGTGAAG
GAGGCAAAAGGCAACGCTGGTCAACTCAGGATAGCTCTCTATTGAGTTGG
CACACCCGGGCGCATGCAGGCACTGGCGGCATCGGGCGCTCTGCGGTTTG
ACTCCGCAGCCTTGTTAATCTTGGACATGGAGAAAAATGTGAAAGGGAGG
GATGTTGTCGACATGGATGGCGTCGCGAAGGACACGATGGAATTGCTCAC
AAGGCACGCACGGCCGCAGTTAGTGTCGTTGTCGACGTCTAGGGATGGCG
AGGGGAAAGGGGTGAAGGAGGCAAAAGGCAACGCTGGTCAACTCAGGATA
GCTCTCTATTGA
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