mRNA_H-paniculata_contig9587.17291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9587.17291.1
Unique NamemRNA_H-paniculata_contig9587.17291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9587.17291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9587contigH-paniculata_contig9587:2531..3016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size486
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9587.17291.1prot_H-paniculata_contig9587.17291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9587 2607..2933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.171759-UTR-H-paniculata_contig9587:2530..26061622931189.171759-UTR-H-paniculata_contig9587:2530..2606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9587 2531..2606 +
1691481630.7595963-UTR-H-paniculata_contig9587:2530..26061691481630.7595963-UTR-H-paniculata_contig9587:2530..2606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9587 2531..2606 +
1622931189.2203016-UTR-H-paniculata_contig9587:2933..30161622931189.2203016-UTR-H-paniculata_contig9587:2933..3016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9587 2934..3016 +
1691481630.7780724-UTR-H-paniculata_contig9587:2933..30161691481630.7780724-UTR-H-paniculata_contig9587:2933..3016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9587 2934..3016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.200823-CDS-H-paniculata_contig9587:2606..29331622931189.200823-CDS-H-paniculata_contig9587:2606..2933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9587 2607..2933 +
1691481630.7689874-CDS-H-paniculata_contig9587:2606..29331691481630.7689874-CDS-H-paniculata_contig9587:2606..2933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9587 2607..2933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9587.17291.1

>prot_H-paniculata_contig9587.17291.1 ID=prot_H-paniculata_contig9587.17291.1|Name=mRNA_H-paniculata_contig9587.17291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MQMLFVFRMVLHRLNTLIARILRCSMVYRVPCVSFASHGHLPQLKQIQYS
FQICRIIRSCIGLCSRSAILTDIAKPARKLKCLCPTYFTFGFGSLPALQT
VQVFSFTH*
back to top

mRNA from alignment at H-paniculata_contig9587:2531..3016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9587.17291.1 ID=mRNA_H-paniculata_contig9587.17291.1|Name=mRNA_H-paniculata_contig9587.17291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig9587:2531..3016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTGTTTACGAGTCTATGAATGGTCACTCTACAGATAAGTCACCAGGTG
GTGGTACACCCGGCGACTAGTCACGCATGCAGATGTTGTTTGTTTTTCGG
ATGGTACTGCACAGATTGAATACTTTAATTGCCCGCATTTTGAGATGCTC
CATGGTATATCGAGTACCATGCGTATCATTCGCGTCACATGGACATCTGC
CCCAGCTCAAACAGATACAGTATTCGTTCCAAATTTGTCGTATTATTCGT
TCTTGTATCGGTTTATGTTCGCGGAGTGCAATATTAACCGACATAGCGAA
ACCAGCAAGGAAATTAAAATGTCTGTGCCCGACTTACTTCACTTTCGGTT
TTGGCTCGCTCCCTGCCCTCCAAACGGTACAAGTATTCTCTTTTACCCAT
TGACTAATTGACTAATTGCTGTGTGTGATGTTGATGTTATTCGAGGTGTA
CCGTACGCCTAGGTACATATATTTTTTGGCTTTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9587:2531..3016+

>mRNA_H-paniculata_contig9587.17291.1 ID=mRNA_H-paniculata_contig9587.17291.1|Name=mRNA_H-paniculata_contig9587.17291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig9587:2531..3016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATGTTGTTTGTTTTTCGGATGGTACTGCACAGATTGAATACTTT
AATTGCCCGCATTTTGAGATGCTCCATGGTATATCGAGTACCATGCGTAT
CATTCGCGTCACATGGACATCTGCCCCAGCTCAAACAGATACAGTATTCG
TTCCAAATTTGTCGTATTATTCGTTCTTGTATCGGTTTATGTTCGCGGAG
TGCAATATTAACCGACATAGCGAAACCAGCAAGGAAATTAAAATGTCTGT
GCCCGACTTACTTCACTTTCGGTTTTGGCTCGCTCCCTGCCCTCCAAACG
GTACAAGTATTCTCTTTTACCCATTGAATGCAGATGTTGTTTGTTTTTCG
GATGGTACTGCACAGATTGAATACTTTAATTGCCCGCATTTTGAGATGCT
CCATGGTATATCGAGTACCATGCGTATCATTCGCGTCACATGGACATCTG
CCCCAGCTCAAACAGATACAGTATTCGTTCCAAATTTGTCGTATTATTCG
TTCTTGTATCGGTTTATGTTCGCGGAGTGCAATATTAACCGACATAGCGA
AACCAGCAAGGAAATTAAAATGTCTGTGCCCGACTTACTTCACTTTCGGT
TTTGGCTCGCTCCCTGCCCTCCAAACGGTACAAGTATTCTCTTTTACCCA
TTGA
back to top