mRNA_H-paniculata_contig9584.17290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9584.17290.1
Unique NamemRNA_H-paniculata_contig9584.17290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: D8LGC7_ECTSI (Related to G-protein coupled receptors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC7_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 7.280e-65
Identity = 116/217 (53.46%), Postives = 141/217 (64.98%), Query Frame = 1 
Query:    4 QQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYM----------------------------CFSVYRAVKGQGGGGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYG-AVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSST--CC---SRIAAVDRSSLL 552
            Q+RF  VMA+CW +PL MA LPF+T+NYG+AGAWCSIT+KDLKSLEWGTFWRF +IYVPL     + AY+                                      + G G   TSTS+ I+ RLRLYPI LVVCWSWATVNR  EAI+PY  ++FWL++LQYSFQ+I GFLNL+IFLRTP VMEEWRD+++  S   CC    R+  VDR+ LL
Sbjct:   63 QERFWTVMAYCWLIPLGMACLPFTTDNYGEAGAWCSITSKDLKSLEWGTFWRFAVIYVPLVFEAAMVAYVEPGHETQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGVETSTSIPIIERLRLYPIVLVVCWSWATVNRTREAIEPYAESLFWLFILQYSFQSIQGFLNLMIFLRTPGVMEEWRDDIKKWSCGDCCWPFRRVRTVDRAGLL 279
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A6H5KTE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE4_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 2.510e-64
Identity = 117/232 (50.43%), Postives = 141/232 (60.78%), Query Frame = 1 
Query:   55 MATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKG---------------QGGG---------------------------------------------GQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYG-AVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSST--CC---SRIAAVDRSSLL 552
            MA LP +T+NYGDAGAWCSIT+KDLKSLEWGTFWRF++IYVPLWV +G+N YMC  V+RA++G               Q GG                                             G + TSTS+ I+ RLRLYPI LV+CWSWATVNR+ EAI+PY  + FWL++LQYSFQ+I GFLNL+IFLRTP VMEEWRD++   S   CC    R+  VDRS LL
Sbjct:    1 MACLPITTDNYGDAGAWCSITSKDLKSLEWGTFWRFSVIYVPLWVCVGVNGYMCIKVHRAMRGFEAAMVAYVEPGHEMQAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGAETSTSIPIIERLRLYPIVLVICWSWATVNRIREAIEPYAESRFWLFILQYSFQSIQGFLNLMIFLRTPGVMEEWRDDINKWSCGDCCWPFRRVRTVDRSGLL 232
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A835ZGG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.910e-32
Identity = 76/207 (36.71%), Postives = 100/207 (48.31%), Query Frame = 1 
Query:   22 VMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAV----------------------------KGQGG-------------------------GGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEW 483
            +MA CW  PL +A LP +T +YGDAGAWCS+ A        G  WRF  +Y PLW  +  N +M  +  R +                             G GG                         G     S ++A++ RLR+YP+ L VCWSWA+VNRV+E   P    FWLY+LQYSFQT++G LN I++  TP+V EEW
Sbjct:  186 IMAVCWCAPLPLALLPLATRSYGDAGAWCSVVANGAGDTA-GVVWRFAALYAPLWAAVAANLWMHVAASRVLGRLERAAAAAGGSDAESPVSERXXXXXXXGSGGXXXXXXXXXXXXGVCGSMFVSAEHTGLVHGQSRALAVIARLRMYPVVLCVCWSWASVNRVYELAAPDAPQFWLYLLQYSFQTLNGVLNAIVYAVTPSVDEEW 391
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S2V1W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.420e-28
Identity = 61/176 (34.66%), Postives = 94/176 (53.41%), Query Frame = 1 
Query:    1 KQQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMA-IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSSTCCSRI 525
              QR      + W   L++A +P   N YG    WC IT   +   + GT  RF   YVPLW+ +  NA+  +SV R+V+G        TS  +  +V RLR YP  +++ + WAT+NR++ +I+P   VFWL  LQ +F++  G +N + +   PTV E WR E   + + C+ +
Sbjct:    7 SDQRMTPYHIYVWGSALLLALIP--VNYYGQTTGWCWITITSVVDFDPGTALRFFCFYVPLWLAVIFNAFAYYSVTRSVRGMLAAQTEETSDRLLRLVRRLRWYPFIMIIAYFWATINRIYNSINPGQPVFWLIFLQAAFRSAQGLMNSMAYGYNPTVREAWRKECCAAGSTCAAV 180
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S2F7C4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7C4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.790e-24
Identity = 65/202 (32.18%), Postives = 99/202 (49.01%), Query Frame = 1 
Query:    1 KQQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMA-------------IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEW----RDEVRNSSTC---CSRIAAVDRSS 546
            +Q++    + + W +P + A LPF+T NYG+ GAWCSIT     S   G  W F  I+VP W+ IG N  +  +V R V+G       +     +              V RL+LYP+ LVV W+W T+      ++P   +FWL  + YS  ++ GFLN  +++ TP+V   W    +D+V         C  +  + RSS
Sbjct:  117 EQRKLPTYIIFSWGLPAIFAALPFTTGNYGNNGAWCSIT-PGTGSYWAGVMWIFVCIFVPCWLAIGYNVTVYLTVNRVVRGLHMSHSMSEMDEYSRRTHLKQRANQNQFVERLQLYPLVLVVSWTWVTIYCFQAMLEPDQHIFWLAWIGYSMCSLMGFLNACVYVATPSVWRAWTGGHKDDVIGCGLMTEYCGGLCELQRSS 317
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: D8LJZ4_ECTSI (G-protein coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ4_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.340e-19
Identity = 56/155 (36.13%), Postives = 78/155 (50.32%), Query Frame = 1 
Query:   37 WFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTI--GINAYM-CFSVYRAVKGQGGGGQSATSTSMA-------IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTV 471
            W   L+   LPF+T++YG  G+WC I       ++ GT WR+ ++Y PLW  I   I  Y+  FSV R    +  GG SA   S            RL  YP  L+  W++AT+NR+  AIDP   VF L++L  S     GF N +++  T  V
Sbjct:  128 WGSALLSTLLPFTTDSYGSTGSWCWIETNPGSDVDVGTMWRYLVLYCPLWAAIVFNIKVYVRIFSVVRRFSTEIAGGASAVGPSAEQQTRMTKFSKRLVWYPAVLIASWTFATINRIQNAIDPDHPVFGLFLLHTSLVAFQGFFNALVYGSTDAV 282
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A2R6WMW1_MARPO (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WMW1_MARPO)

HSP 1 Score: 86.3 bits (212), Expect = 8.400e-15
Identity = 50/158 (31.65%), Postives = 73/158 (46.20%), Query Frame = 1 
Query:    7 QRFG-AVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYR--------AVKGQGGGGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
            + FG A  A+ W    +M  +P   ++YG AGAWC +  +       G   RF   YVPLW  I  N  + F V R        AV       Q      M  +NR   YP+ L+  W++ T+NR+ + ++P   +FWLY L  S  ++ G  N I +
Sbjct:  110 EEFGPAFHAYVWGTAFLMTIIPSIGDDYGPAGAWCWVRTETTA----GKVLRFMTFYVPLWGAILFNGAVYFQVIRMLKYATRMAVSMADRQRQVEARPEMKAMNRWGYYPLILIASWTFGTINRIHDFVEPQNKLFWLYCLHISTASLMGLFNSIAY 263
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: L1K590_GUITC (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1K590_GUITC)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-14
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 1 
Query:   10 RFGAVMAWCWFVPLMMATLPFSTNNYG-DAGA-WCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQ--SATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
            R+ A+    W +P  +  LP  + +YG + GA W   TA  L         RF   Y+PLW+ IG N +   ++   ++G     Q  S  +T + +  RL LYP+ L++CW + T+NR++ ++ P   +F LY L   F ++ GF N +++
Sbjct:    4 RYHAI---AWGIPFFLFLLPLFSKSYGYEYGACWILSTAPVL---------RFVQFYIPLWIVIGYNVWNISTLIFHLRGLVLSTQDDSQANTDLQVFWRLALYPVILIICWFFGTINRIYNSLHPDEPIFALYFLHKFFGSMQGFFNFLVY 143
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S1C6G2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6G2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.720e-14
Identity = 42/122 (34.43%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:   79 NNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMAIVNRLR----LYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHG 432
             +YG AG+ C I A        G  WRF   Y+PLWV +G N ++ ++  R ++        A   +   + + R    LYP+ L+VCW WATVNR+   + P    FWLY L  +F    G
Sbjct:    1 RSYGAAGSLCWIDASST-----GALWRFVTFYLPLWVCMGYNVWVYWTTMRRIR-------MAVLRAGGRIGKARQPLLLYPLILLVCWFWATVNRLQNLVAPEEPQFWLYALGLAFAACQG 110
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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S4L1A2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L1A2_GUITH)

HSP 1 Score: 83.2 bits (204), Expect = 8.730e-14
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 1 
Query:    4 QQRFGAVMAWCWFVPLMMATLPFSTNNYG-DAGA-WCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQ--SATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
            + R+ A+    W +P  +  LP  + +YG + GA W   TA  L         RF   Y+PLW+ IG N +   ++   ++G     Q  S  +T + +  RL LYP+ L++CW + T+NR++ ++ P   +F LY L   F ++ GF N +++
Sbjct:  119 EMRYHAI---AWGIPFFLFLLPLFSKSYGYEYGACWILSTAPVL---------RFVQFYIPLWIVIGYNVWNISTLIFHLRGLVLSTQDDSQANTDLQVFWRLALYPVILIICWFFGTINRIYNSLHPDEPIFALYFLHKFFGSMQGFFNFLVY 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGC7_ECTSI7.280e-6553.46Related to G-protein coupled receptors n=1 Tax=Ect... [more]
A0A6H5KTE4_9PHAE2.510e-6450.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGG8_9STRA2.910e-3236.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1W1_9STRA8.420e-2834.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2F7C4_9STRA8.790e-2432.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LJZ4_ECTSI1.340e-1936.13G-protein coupled receptor n=1 Tax=Ectocarpus sili... [more]
A0A2R6WMW1_MARPO8.400e-1531.65G_PROTEIN_RECEP_F2_4 domain-containing protein n=2... [more]
L1K590_GUITC1.940e-1430.92G_PROTEIN_RECEP_F2_4 domain-containing protein n=2... [more]
A0A7S1C6G2_9STRA7.720e-1434.43Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4L1A2_GUITH8.730e-1430.52Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9584contigH-paniculata_contig9584:5213..8833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D8LJZ4
Preferred nameGCR1
KEGG koko:K08467
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0001101,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005887,GO:0006082,GO:0006109,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007186,GO:0007202,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009645,GO:0009719,GO:0009725,GO:0009735,GO:0009737,GO:0009738,GO:0009741,GO:0009742,GO:0009755,GO:0009785,GO:0009787,GO:0009788,GO:0009791,GO:0009845,GO:0009889,GO:0009908,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010162,GO:0010231,GO:0010244,GO:0010431,GO:0010517,GO:0010518,GO:0010646,GO:0010647,GO:0010648,GO:0010675,GO:0010863,GO:0010919,GO:0012505,GO:0014070,GO:0016020,GO:0016021,GO:0016053,GO:0017144,GO:0019220,GO:0019222,GO:0019438,GO:0019752,GO:0021700,GO:0022414,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030522,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032960,GO:0033993,GO:0038023,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043401,GO:0043436,GO:0044093,GO:0044214,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0048316,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060191,GO:0060193,GO:0061458,GO:0062012,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071695,GO:0071704,GO:0071944,GO:0080090,GO:0089717,GO:0090351,GO:0090567,GO:0097305,GO:0097306,GO:0097437,GO:0098588,GO:0098805,GO:0104004,GO:1900274,GO:1901360,GO:1901362,GO:1901419,GO:1901420,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902221,GO:1902223,GO:1902930,GO:1905957,GO:1905958
EggNOG free text desc.G-protein coupled receptor
EggNOG OGs28MT7@1,2QUBH@2759
Ec32 ortholog descriptionRelated to G-protein coupled receptors
Ec32 orthologEc-06_002590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Exons3
Model size1825
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9584.17290.1prot_H-paniculata_contig9584.17290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9584 6459..8809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.0594208-UTR-H-paniculata_contig9584:5212..64581622931189.0594208-UTR-H-paniculata_contig9584:5212..6458Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9584 5213..6458 -
1691481630.702643-UTR-H-paniculata_contig9584:5212..64581691481630.702643-UTR-H-paniculata_contig9584:5212..6458Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9584 5213..6458 -
1622931189.121187-UTR-H-paniculata_contig9584:8809..88331622931189.121187-UTR-H-paniculata_contig9584:8809..8833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9584 8810..8833 -
1691481630.7508776-UTR-H-paniculata_contig9584:8809..88331691481630.7508776-UTR-H-paniculata_contig9584:8809..8833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9584 8810..8833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.077958-CDS-H-paniculata_contig9584:6458..66171622931189.077958-CDS-H-paniculata_contig9584:6458..6617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9584 6459..6617 -
1691481630.7158763-CDS-H-paniculata_contig9584:6458..66171691481630.7158763-CDS-H-paniculata_contig9584:6458..6617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9584 6459..6617 -
1622931189.0929642-CDS-H-paniculata_contig9584:8284..84631622931189.0929642-CDS-H-paniculata_contig9584:8284..8463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9584 8285..8463 -
1691481630.7286553-CDS-H-paniculata_contig9584:8284..84631691481630.7286553-CDS-H-paniculata_contig9584:8284..8463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9584 8285..8463 -
1622931189.107323-CDS-H-paniculata_contig9584:8592..88091622931189.107323-CDS-H-paniculata_contig9584:8592..8809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9584 8593..8809 -
1691481630.7392373-CDS-H-paniculata_contig9584:8592..88091691481630.7392373-CDS-H-paniculata_contig9584:8592..8809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9584 8593..8809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9584.17290.1

>prot_H-paniculata_contig9584.17290.1 ID=prot_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIY
VPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMAIVNRLRLYPIALV
VCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVM
EEWRDEVRNSSTCCSRIAAVDRSSLLRNIVIAGK*
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mRNA from alignment at H-paniculata_contig9584:5213..8833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9584.17290.1 ID=mRNA_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3621bp|location=Sequence derived from alignment at H-paniculata_contig9584:5213..8833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAACAGAGATTCGGGGCGGTGATGGCGTGGTGCTGGTTCGTACCCTT
GATGATGGCCACGCTTCCCTTCTCTACCAACAACTACGGCGACGCGGGGG
CCTGGTGCTCCATCACTGCGAAGGACCTCAAGTCCCTAGAGTGGGGCACG
TTTTGGCGGTTCACCATCATCTACGTGCCTCTTTGGGTGACCATCGGCAT
CAACGCGTACATGTGCTTTTCCGTGTACCGCGCAGTCAAGGGTTTCGAGG
CGGCCGCCATGCTTGCCTACGAGGAGGCACCAGATGAGGCGACGCCCACC
CCTTCCCCTTCCAGAGCGGAATCAGGAAGGGAAGAGGGCGCGGCGCGAGA
GGGCGGCGGCGGGGGCGGAGGGCAGGGGGGAGGGGGACAGTCGGCGACGT
CAACTTCGATGGCGATCGTTAACCGCTTGCGGTTGTATCCGATCGCGTTG
GTGGTGTGTTGGAGCTGGGCGACCGTGAATCGGGTGTTTGAGGCGATTGA
TCCTTACGGGGCCGTGTTCTGGCTGTACGTGCTCCAGTACTCGTTCCAGG
TGAGAGTTTTCTTTTTCATTTTTTTCTTTTGGCTCTTTTCTTTTAAGGAG
CCGCGGTCTCTCTGAGGTCTCGCAGAATATATATAGATATAAAACATGAG
GTAAGAACAGCATAAGTGAAAACGCGCGTGGAAGTGTGAAAGATTTGAAT
GACCAGCTGAAAAGGGCACTGCGGCGTTAGCTTCCAACGCCGCAGGAGCT
AAAACGCTTTATGTATACGCATATATTTTATCATGTATGGTCTGTCCTGC
CCGTGCGTCCATAATATATGTTTTTGGAAAAAACACGAGAAAGTGCTGCA
AGTAGTTAAGTGCGGTGCGTCATTTTTCAGTGGCCCGAGTGGCTGAGCGG
CGGGTCGAAAGCAGCCACCATGTGGAAGCTTTGGCAATCATGTTGCCGAA
TTTGTGTGTACCGCAGTCGGTGTGAGACATGGTCAGTTTTCCCTGTTCGC
CCCCCCCCCCCCGCTGCTGATCTTCCCGAGTTTTCCGAGTCGTGGAATCG
GTTAATCAGACCTCTTAGTCATCGAGACATCTTCTAAAACTTTGTTTGCA
GGTTTTTTCGGGCAAAAATGCCTCCCCAAGAAAAAACTCTGTGTACATTA
TCCTGGAGTTTTTTGCTGCGGAAATCAACCTCCTTTCCGCTAGGCTGCTC
TAACCCTTCGCCTGTTTGTTTTCAGGGCAGAAGTTCTCAATCTCTCATAT
CTAATGTGCAGGGTTTGCTACGTACATGCGGAGGGTCCCATCAAGATGAC
CGCACACGTTCCACGTCGCCGCGGACATAACCAAGCTAGATATACGATGC
CGAGGTGATAGCCGTGCAGCGGCAACCGGAGTCCCCATCGCTGGCCAGCG
ATGGTGGCCTTCAGTTGCTGCTGCAAGGCTGTCCCATGTTGCCGCCGTTG
CGGCAGCAATGGCAACCTTCAGCTACTTCTGCGAGACTGTTCCATCCTGC
CTCCGATGTGATGGATGACGATGCCCACGATGATAACCCATACTGCCCAC
GCGGCGAAGCACGTGTTGCGCTCGAAGCGGCCAATTTTAGCATGTTTGCA
GTGTTTGATCTGGAGAATGACAAACCTAAGTCAAAACTCACCCGTAACAG
TATAGAACAATAGGTTTGCCCTGCCACCTCGTGGTGGAATATTCAACTTG
CTCTTGGCATTTGTGAAAATATTTACTCCACCGATAAATTCAACACTGGT
AGTAATTTTTCTCCGTGCTTCGCCCATAATAAGCACATATATATATAATT
GCATTTTTTATTTCCCTCAAGTTAAAGTGACGTCCGAAAAAAAAACGTGT
CAGAAAAAAATGCCCCCAATAGGAAGCGGTTTCAACAGTATGAAAGGAGT
TGACCCACAGTGTCTTCAACCTCCATTGGTGGTCATGGTATTTTCTGTGT
GTACTTGCACGTGTTCGTAGGGAACCCATCTATGGATTTGAAAATTGCCG
ATGAGAACATGGCCTCGAAGAATGATGGACTTCATAAACTCAGTACAAAA
AACACATATATAATGTTATAAAACTAGTCATGAGATTTTTGAGGCTTATG
ATAGCCTTGATGTACTTTGCTGATAAGAGTGAAAAATGCCCCCCCCCCCC
TCTACCCCGCGTCTGTGTTCCCCCCGGCCGCTGCCGCGCGGGTCCCCATG
CAATACCTTCTCGCAGACCATTCATGGCTTCTTGAACTTGATCATATTCT
TGCGGACGCCAACGGTGATGGAAGAGTGGCGGGACGAAGTACGCAATTCG
TCAACCTGCTGTTCTAGAATCGCGGCTGTAGATCGATCGTCGTTATTGCG
CAACATAGTCATAGCGGGCAAGTAGGTCGTGAGTAGTGTTCGTTGTCCAT
CATTTTTTTTTGTGTCGTAAAAAAGTAGGTGCTATTCTCTGTTTTTCTTG
TGGGTTGACGTGTATTCTCGTGAAATCGACGGGTGGCGGGTGGCGGGTGG
TGCGTAGCAGGTGGCAGGTGACTGCTATGGACACTATCATTCTGTGTGTG
GGGTATTTGGGGCTGAGATAGTCAATTGAGCCGGAATTTGCATGCAATGG
AAGCAGTAGTTAGTGGTTATTGTACAACGAAGTGGGTTTTGTTGGTTTGT
TTTTGTCATCACATAATATAGGCCTTGGCGATGTGCATACTGGTGGCCTA
CCAACAATTTTAGACTGGAGTATTACTTTCCCGAAGAGTTCCAATTGCCA
AGGTACTATTCTCTGAAAAGTTTTGATTATGACCATGGGTGGGGGTGTTC
CTGTTCCCGTTCGTTTTTAAGTTCGACGATGATCATGATGAATGTTTACA
TCTGAAGCCGATGGATAATCAATATAAGCCGAGTAGGCTACCTGGGAAAC
CCGACTCCCCGTCCCACTTCGAGTGAAAACGGTGCAAGCAACTTGGGCAA
GCAACTTGGAAAGTTCCCAGAACATCGACGCAGGGAACAACAACTGTACC
GAAGGGTCTCCTATCCCGTTCCCGATTTCCAATCATGTGGGAAAGAAGCC
ATGTAGTAGCGAAGCGCATACACCATGCCCCTAGTTTGGTCAGTTTGAGG
ATAAGTAAGCAAACTGCCGAAAAATGACGGTTAGCATACCCCGATATTGT
CTCGCGATTATTGTCATGACTTGTACAGTACGGTGTTTGCATCTCTGCTT
GTACTTTTGGCTCACTCTTTACTCTTCAGGACGTCTAAACCATGGCAATT
GATGCGCATGTGTGGTGATGTCGTTAAGTATTTGCTAGTGGTAGAGTTCG
TGCTTCTTCGTGAAGCGTAACACTGATCACGTAAAAATATAGTGGTTTTT
TATCAGTCTTGAACATGCTACGTGGTGACGTCGCTATCTAGTAGGTGAAG
TTCTTAACAGGCGATACTTGGGATTGGGGATCAACTTCCTCATTGGGATT
GAAGTCTCGTTGAATTGAATGGAATACTTCGAGAACGGTGTTAGCGAAAG
GTACTTTCCGGGGAGATTTTGTGTCCATCTCACAGTTAATTACTCTGCAC
AATGAATTTGGAAACCTTTTCATACCTCGATTCGCACCGGAATAGCCTTT
CGATTGGCACCATTTTAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9584:5213..8833-

>mRNA_H-paniculata_contig9584.17290.1 ID=mRNA_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig9584:5213..8833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTGGTGCTGGTTCGTACCCTTGATGATGGCCACGCTTCCCTTCTC
TACCAACAACTACGGCGACGCGGGGGCCTGGTGCTCCATCACTGCGAAGG
ACCTCAAGTCCCTAGAGTGGGGCACGTTTTGGCGGTTCACCATCATCTAC
GTGCCTCTTTGGGTGACCATCGGCATCAACGCGTACATGTGCTTTTCCGT
GTACCGCGCAGTCAAGGATGGCGTGGTGCTGGTTCGTACCCTTGATGATG
GCCACGCTTCCCTTCTCTACCAACAACTACGGCGACGCGGGGGCCTGGTG
CTCCATCACTGCGAAGGACCTCAAGTCCCTAGAGTGGGGCACGTTTTGGC
GGTTCACCATCATCTACGTGCCTCTTTGGGTGACCATCGGCATCAACGCG
TACATGTGCTTTTCCGTGTACCGCGCAGTCAAGGGGCAGGGGGGAGGGGG
ACAGTCGGCGACGTCAACTTCGATGGCGATCGTTAACCGCTTGCGGTTGT
ATCCGATCGCGTTGGTGGTGTGTTGGAGCTGGGCGACCGTGAATCGGGTG
TTTGAGGCGATTGATCCTTACGGGGCCGTGTTCTGGCTGTACGTGCTCCA
GTACTCGTTCCAGGGCAGGGGGGAGGGGGACAGTCGGCGACGTCAACTTC
GATGGCGATCGTTAACCGCTTGCGGTTGTATCCGATCGCGTTGGTGGTGT
GTTGGAGCTGGGCGACCGTGAATCGGGTGTTTGAGGCGATTGATCCTTAC
GGGGCCGTGTTCTGGCTGTACGTGCTCCAGTACTCGTTCCAGACCATTCA
TGGCTTCTTGAACTTGATCATATTCTTGCGGACGCCAACGGTGATGGAAG
AGTGGCGGGACGAAGTACGCAATTCGTCAACCTGCTGTTCTAGAATCGCG
GCTGTAGATCGATCGTCGTTATTGCGCAACATAGTCATAGCGGGCAAGTA
GACCATTCATGGCTTCTTGAACTTGATCATATTCTTGCGGACGCCAACGG
TGATGGAAGAGTGGCGGGACGAAGTACGCAATTCGTCAACCTGCTGTTCT
AGAATCGCGGCTGTAGATCGATCGTCGTTATTGCGCAACATAGTCATAGC
GGGCAAGTAG
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