mRNA_H-paniculata_contig9584.17290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: D8LGC7_ECTSI (Related to G-protein coupled receptors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC7_ECTSI) HSP 1 Score: 224 bits (570), Expect = 7.280e-65 Identity = 116/217 (53.46%), Postives = 141/217 (64.98%), Query Frame = 1 Query: 4 QQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYM----------------------------CFSVYRAVKGQGGGGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYG-AVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSST--CC---SRIAAVDRSSLL 552
Q+RF VMA+CW +PL MA LPF+T+NYG+AGAWCSIT+KDLKSLEWGTFWRF +IYVPL + AY+ + G G TSTS+ I+ RLRLYPI LVVCWSWATVNR EAI+PY ++FWL++LQYSFQ+I GFLNL+IFLRTP VMEEWRD+++ S CC R+ VDR+ LL
Sbjct: 63 QERFWTVMAYCWLIPLGMACLPFTTDNYGEAGAWCSITSKDLKSLEWGTFWRFAVIYVPLVFEAAMVAYVEPGHETQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGVETSTSIPIIERLRLYPIVLVVCWSWATVNRTREAIEPYAESLFWLFILQYSFQSIQGFLNLMIFLRTPGVMEEWRDDIKKWSCGDCCWPFRRVRTVDRAGLL 279
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A6H5KTE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE4_9PHAE) HSP 1 Score: 221 bits (562), Expect = 2.510e-64 Identity = 117/232 (50.43%), Postives = 141/232 (60.78%), Query Frame = 1 Query: 55 MATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKG---------------QGGG---------------------------------------------GQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYG-AVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSST--CC---SRIAAVDRSSLL 552
MA LP +T+NYGDAGAWCSIT+KDLKSLEWGTFWRF++IYVPLWV +G+N YMC V+RA++G Q GG G + TSTS+ I+ RLRLYPI LV+CWSWATVNR+ EAI+PY + FWL++LQYSFQ+I GFLNL+IFLRTP VMEEWRD++ S CC R+ VDRS LL
Sbjct: 1 MACLPITTDNYGDAGAWCSITSKDLKSLEWGTFWRFSVIYVPLWVCVGVNGYMCIKVHRAMRGFEAAMVAYVEPGHEMQAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGAETSTSIPIIERLRLYPIVLVICWSWATVNRIREAIEPYAESRFWLFILQYSFQSIQGFLNLMIFLRTPGVMEEWRDDINKWSCGDCCWPFRRVRTVDRSGLL 232
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A835ZGG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG8_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.910e-32 Identity = 76/207 (36.71%), Postives = 100/207 (48.31%), Query Frame = 1 Query: 22 VMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAV----------------------------KGQGG-------------------------GGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEW 483
+MA CW PL +A LP +T +YGDAGAWCS+ A G WRF +Y PLW + N +M + R + G GG G S ++A++ RLR+YP+ L VCWSWA+VNRV+E P FWLY+LQYSFQT++G LN I++ TP+V EEW
Sbjct: 186 IMAVCWCAPLPLALLPLATRSYGDAGAWCSVVANGAGDTA-GVVWRFAALYAPLWAAVAANLWMHVAASRVLGRLERAAAAAGGSDAESPVSERXXXXXXXGSGGXXXXXXXXXXXXGVCGSMFVSAEHTGLVHGQSRALAVIARLRMYPVVLCVCWSWASVNRVYELAAPDAPQFWLYLLQYSFQTLNGVLNAIVYAVTPSVDEEW 391
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S2V1W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W1_9STRA) HSP 1 Score: 121 bits (304), Expect = 8.420e-28 Identity = 61/176 (34.66%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 1 KQQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMA-IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSSTCCSRI 525
QR + W L++A +P N YG WC IT + + GT RF YVPLW+ + NA+ +SV R+V+G TS + +V RLR YP +++ + WAT+NR++ +I+P VFWL LQ +F++ G +N + + PTV E WR E + + C+ +
Sbjct: 7 SDQRMTPYHIYVWGSALLLALIP--VNYYGQTTGWCWITITSVVDFDPGTALRFFCFYVPLWLAVIFNAFAYYSVTRSVRGMLAAQTEETSDRLLRLVRRLRWYPFIMIIAYFWATINRIYNSINPGQPVFWLIFLQAAFRSAQGLMNSMAYGYNPTVREAWRKECCAAGSTCAAV 180
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S2F7C4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7C4_9STRA) HSP 1 Score: 114 bits (284), Expect = 8.790e-24 Identity = 65/202 (32.18%), Postives = 99/202 (49.01%), Query Frame = 1 Query: 1 KQQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMA-------------IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEW----RDEVRNSSTC---CSRIAAVDRSS 546
+Q++ + + W +P + A LPF+T NYG+ GAWCSIT S G W F I+VP W+ IG N + +V R V+G + + V RL+LYP+ LVV W+W T+ ++P +FWL + YS ++ GFLN +++ TP+V W +D+V C + + RSS
Sbjct: 117 EQRKLPTYIIFSWGLPAIFAALPFTTGNYGNNGAWCSIT-PGTGSYWAGVMWIFVCIFVPCWLAIGYNVTVYLTVNRVVRGLHMSHSMSEMDEYSRRTHLKQRANQNQFVERLQLYPLVLVVSWTWVTIYCFQAMLEPDQHIFWLAWIGYSMCSLMGFLNACVYVATPSVWRAWTGGHKDDVIGCGLMTEYCGGLCELQRSS 317
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: D8LJZ4_ECTSI (G-protein coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ4_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.340e-19 Identity = 56/155 (36.13%), Postives = 78/155 (50.32%), Query Frame = 1 Query: 37 WFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTI--GINAYM-CFSVYRAVKGQGGGGQSATSTSMA-------IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTV 471
W L+ LPF+T++YG G+WC I ++ GT WR+ ++Y PLW I I Y+ FSV R + GG SA S RL YP L+ W++AT+NR+ AIDP VF L++L S GF N +++ T V
Sbjct: 128 WGSALLSTLLPFTTDSYGSTGSWCWIETNPGSDVDVGTMWRYLVLYCPLWAAIVFNIKVYVRIFSVVRRFSTEIAGGASAVGPSAEQQTRMTKFSKRLVWYPAVLIASWTFATINRIQNAIDPDHPVFGLFLLHTSLVAFQGFFNALVYGSTDAV 282
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A2R6WMW1_MARPO (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WMW1_MARPO) HSP 1 Score: 86.3 bits (212), Expect = 8.400e-15 Identity = 50/158 (31.65%), Postives = 73/158 (46.20%), Query Frame = 1 Query: 7 QRFG-AVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYR--------AVKGQGGGGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
+ FG A A+ W +M +P ++YG AGAWC + + G RF YVPLW I N + F V R AV Q M +NR YP+ L+ W++ T+NR+ + ++P +FWLY L S ++ G N I +
Sbjct: 110 EEFGPAFHAYVWGTAFLMTIIPSIGDDYGPAGAWCWVRTETTA----GKVLRFMTFYVPLWGAILFNGAVYFQVIRMLKYATRMAVSMADRQRQVEARPEMKAMNRWGYYPLILIASWTFGTINRIHDFVEPQNKLFWLYCLHISTASLMGLFNSIAY 263
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: L1K590_GUITC (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1K590_GUITC) HSP 1 Score: 82.4 bits (202), Expect = 1.940e-14 Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 10 RFGAVMAWCWFVPLMMATLPFSTNNYG-DAGA-WCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQ--SATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
R+ A+ W +P + LP + +YG + GA W TA L RF Y+PLW+ IG N + ++ ++G Q S +T + + RL LYP+ L++CW + T+NR++ ++ P +F LY L F ++ GF N +++
Sbjct: 4 RYHAI---AWGIPFFLFLLPLFSKSYGYEYGACWILSTAPVL---------RFVQFYIPLWIVIGYNVWNISTLIFHLRGLVLSTQDDSQANTDLQVFWRLALYPVILIICWFFGTINRIYNSLHPDEPIFALYFLHKFFGSMQGFFNFLVY 143
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S1C6G2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6G2_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 7.720e-14 Identity = 42/122 (34.43%), Postives = 60/122 (49.18%), Query Frame = 1 Query: 79 NNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMAIVNRLR----LYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHG 432
+YG AG+ C I A G WRF Y+PLWV +G N ++ ++ R ++ A + + + R LYP+ L+VCW WATVNR+ + P FWLY L +F G
Sbjct: 1 RSYGAAGSLCWIDASST-----GALWRFVTFYLPLWVCMGYNVWVYWTTMRRIR-------MAVLRAGGRIGKARQPLLLYPLILLVCWFWATVNRLQNLVAPEEPQFWLYALGLAFAACQG 110
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S4L1A2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L1A2_GUITH) HSP 1 Score: 83.2 bits (204), Expect = 8.730e-14 Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 4 QQRFGAVMAWCWFVPLMMATLPFSTNNYG-DAGA-WCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQ--SATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
+ R+ A+ W +P + LP + +YG + GA W TA L RF Y+PLW+ IG N + ++ ++G Q S +T + + RL LYP+ L++CW + T+NR++ ++ P +F LY L F ++ GF N +++
Sbjct: 119 EMRYHAI---AWGIPFFLFLLPLFSKSYGYEYGACWILSTAPVL---------RFVQFYIPLWIVIGYNVWNISTLIFHLRGLVLSTQDDSQANTDLQVFWRLALYPVILIICWFFGTINRIYNSLHPDEPIFALYFLHKFFGSMQGFFNFLVY 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9584.17290.1 >prot_H-paniculata_contig9584.17290.1 ID=prot_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp MAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYback to top mRNA from alignment at H-paniculata_contig9584:5213..8833- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9584.17290.1 ID=mRNA_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3621bp|location=Sequence derived from alignment at H-paniculata_contig9584:5213..8833- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9584:5213..8833- >mRNA_H-paniculata_contig9584.17290.1 ID=mRNA_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig9584:5213..8833- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |