mRNA_H-paniculata_contig9583.17289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9583.17289.1
Unique NamemRNA_H-paniculata_contig9583.17289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9583.17289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9583contigH-paniculata_contig9583:2684..8105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9583.17289.1prot_H-paniculata_contig9583.17289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9583 2684..7982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.9786298-CDS-H-paniculata_contig9583:2683..29241622931188.9786298-CDS-H-paniculata_contig9583:2683..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9583 2684..2924 -
1691481630.6695247-CDS-H-paniculata_contig9583:2683..29241691481630.6695247-CDS-H-paniculata_contig9583:2683..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9583 2684..2924 -
1622931188.999063-CDS-H-paniculata_contig9583:7905..79821622931188.999063-CDS-H-paniculata_contig9583:7905..7982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9583 7906..7982 -
1691481630.6799037-CDS-H-paniculata_contig9583:7905..79821691481630.6799037-CDS-H-paniculata_contig9583:7905..7982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9583 7906..7982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.0158765-UTR-H-paniculata_contig9583:7982..81051622931189.0158765-UTR-H-paniculata_contig9583:7982..8105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9583 7983..8105 -
1691481630.6896727-UTR-H-paniculata_contig9583:7982..81051691481630.6896727-UTR-H-paniculata_contig9583:7982..8105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9583 7983..8105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9583.17289.1

>prot_H-paniculata_contig9583.17289.1 ID=prot_H-paniculata_contig9583.17289.1|Name=mRNA_H-paniculata_contig9583.17289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MDTSGATEGGMRKEADSSCDDGETKSAEAAIQPSAKPESLTTGGTLNGYS
GSISSMPPRLRERIANGRLKSIPESFGGLPLPPPDRSEDSDAVCASSGRI
TIVAR*
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mRNA from alignment at H-paniculata_contig9583:2684..8105-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9583.17289.1 ID=mRNA_H-paniculata_contig9583.17289.1|Name=mRNA_H-paniculata_contig9583.17289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5422bp|location=Sequence derived from alignment at H-paniculata_contig9583:2684..8105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGATTGAGGGCCAAAACAAAGCCGCTCCCTAAGCCACAAAACCGTG
TGTAGAGCGCAGCCCTTGACTGGCATAGAGAACAGTTCCCGAGTCTTACT
GGCCCGGTTTTCCCCTTTCTAGCATGGATACGTCAGGGGCGACGGAGGGC
GGGATGAGGAAAGAGGCCGATTCAAGCTGCGATGATGGAGAAACGAAAAG
GTCTGAGGTACTACAAATGTAGGATACGATATTGGCGGTAAATATTTCGT
GGTTGGTTAACATTCGTACATAGTCAGAGACAGCTTTTGCACAAATGAGC
CTGTTTGCAACATGGGCAATAGATAATAATAGTGGTCATCTCCAGACGAA
GACAACATAGCAATCAATGTTTGGCGTACCAATTCCATGACTGGACACGA
CGGTTACCGCCCGTTCCCCCAGAGATGCCTGCACATTTGCATTCTTCACA
GCGGAAATATGTCAGACTGCATGAAATTCGGCCTCTCTGTATTTCCGTAT
GTATGTCGTTCCGTCTAGCTAACGAATACACGCAAGGGAGACCTTCACCC
TTTTCGCGACGCCTGTAATTCCTGTCTAATTTATCCCCGAAAAACAGGGG
GGAACGACACCGTGACATGATTGCAGGGATAGAGAACCGCTGCTATTCAA
ACAGAAACAGTCCAGTATTAACAACCAGTACATAAAGTACACAACAAACA
CTTACTGTTTAACCGTGGGTAGACCTTGCTGTGCTCAATGATTGCAGCGC
CTCGACATTTGTGGTCAAGTGTTGATTTTTATATTGCTGAACAAACACAA
TGCACCATGACCGATCCCGATGTTACTTTGTGCATGCCAAGAAACGCACC
CTTGAGCGAGACAGATTTCTGTTCTGAGCTGCGCTGTAGGGCGTAGATAA
ATACATGCACAGTGCATTGCCTGCCTGTTTTCCTTGAGCGAATTTCCTTT
ATCACCCACAGCTAGGTCCAATCAGACAAACGTAACCTCACCAGCTATTA
CATTCAGAAAAACAGCGGCAAAACAGCGGCAAACGCATATTTTACAAGCA
GTCTTTTCATTTGCCCTACACGCACACAACGCTTTTGGAAGCGTGACAAA
AATTGTGCAATGCTGCCATAACAGCAAAACAACACACCACAGCTCCCGTA
GTTGTGGACAATGTGATCTCGGCCCGGTGCGCGCCATGGCGGAGTCCGCG
CCATGAAATTTGCCCACTTCAGTGACACATTTAGATGTGGGTGTTTCAAT
TTGGTCTCACGAAACGCAGGATGTACCATAATCATAATCCAAGAAGGACA
TTAAGGGCCTTTGGGCCCTACAGTAAGGTGGGGACAGGAGATGTAGTAGG
GGTGTACCGTGTTACTACCCAGTATTTCGAGGAATATCATTTGTATTCCA
TGGTACCAAGTCACGGAGAGGACTGTTTTGAGGCAGCGCTCCTATGTACA
CGAGGAACTTTAGATGAGACAAGCCCATCATAACAAACTTTTGTATTTAC
ATACCACATGATCCATGACTCATCGCAGTTCCCAAAAATTGGGGTCAACG
GCCGCGCGGTTGACCAGCATTGTTTTATCTTGGTTAAATTCGCATGCTAT
CATAGCAGCTCGACAGCCATTTTCTCTATCGACATGGACTTGTTCTAAGT
GGGCCTGCACTGGCCTATATATGCGCCGTTCGTGCGGCAGATTGCAGCAG
TGGTGATGCGCGCCCAGTTGTAGGAGTTGGTGTTGTCGTGCCAACTGCCC
CGCGGAGACGGCAGCGTCAGTAGTATCAACAAGTGAGAGAAGGAGGAGTA
CCAAGTGCAGTACCGTGCACTCTCTTCCTCGACCATCTTCAGTAAAGAGC
GCTCCGTCTTTTTGTACCGTCTGTGTCGACGTTTAACGAATGACTGCACC
AACTGCTACTACTACATATTGCAATGCAGCAATAATGGCAACAGCAGCAC
CAGCAGCTAGACGAAGTGGATGTTTGATGTTGTCACCGCTAGTAAATAGT
GGGTCGGGTTAACTGAACTCAATAATACGACCGACGCAGAGAATCAAGAT
CATGACTGTGTGAAGAACAGTGTGGCCTCCCACTAGTTCTTTCCATGGAG
CCCAGTATTGGGTTGAAGATCCCAACGGTCGAAATGCTGTGATTTTTCCA
ACATGGGTCGGCGGGCTGCCCTCGCGCGCACTTGACAACGAATGAGATGT
GTTTTTTTTCTAGTAGGTTAATACTTCTTCGCACGCACTCCCTCGAAACG
GGTTCTCATCAGGTCTCGCACCGAGAATGAACCATGAGTTGCTCCACAGA
GAATGTTGCAACAGCCGAGAGCTTTCCAACGAATCCAGCTTCGGGGGGAA
ATTCGCAGTAGCTATCGAGAAATGACCTTTTAAACGACCTCCTGCTTGTT
GTGAAAACCGAAACCGAGGATATGCTGCCCATGAAACTACAGCTCTCTTC
GCTCGCGAGAATTCTCGATAGTCTCGGGAAGTAGTTTTACCCCCCGGACA
AATACGAATGGAGCATTCGCAACTATCTCGAACTATAACTATTTCTCTTA
GGCAAACACGTATTTATTCGTTTGCAAGACTATGAACGGTCATTCTACGG
ATGGTTACCAGGTGGGCGTGTACCTGACGAACAGTCACACATACGGGTCC
TGTTTATTTTCCGGATGGTACTGTAAAGATTGAATATTCTTATCTGCCCG
AGCTTTTTTTTCGATACTCCATGGTATATTGAGTACATTGCATAGTATTC
GCGCCACGTGGACATCTTCCCCAACACAAAACAGATACAGTATTCGTTTC
AGACTTCTCGTATTTATTCGTGTCTAGTAGTCGTATTTGTCCGGGGGGGA
ATTAATTTTTATACAACCTATTCGTTTTTATATTCGCCACCCGATAACAT
AGACACTTCAACATTTGTAAACTGAGAAAAATCACTGTAGCTACCTGCAC
GGGATCGGAGCCTGTTTCTCGGGGGGCAGATCCGGGAGGATCGTTGGAGG
ATCATGTCAGAGGGAGGTGAACAGTAGTGTGGCGTCGGCGAGAGAGCGTA
GCTGTAGCCCCGCGGGTGTGTCGTACATGGAGAAGCTAATGCCCAAAGCA
AAACTTTCCAAAATTTTGGCGGACATCGTCACGATGTTAGGCAGCGCCTA
CGGCTAACTCGTTATTTTTAGAATGCCGTAATGCGTTTACGGCGCATATT
TTAGCATGAATACTGAATTATAATCTATAACAGAAGATAATGTGTCGTGC
TGGGAAAATTTCCTGCTCTCCAGGTCAAATTAAGTTGGTGGAGCTGGCTA
GTAGATGAGCATCAATTTGCAAGCATGTCCAGAGTCGGTTATGTATCCTC
TTTTTGATGTAGAGGTCTGCGTAGTCGGCAAATGGATCATGTGAACCAAT
GAGATCTATCGGGTGGAATCCAGACAGGACTAACCCACCACTTTATCGAA
ACTGGCTTGTTATACCCGTGGTAAAATTATGGAGAGATCGCAATCGCACA
ATAGATCCCACCAGTGGGTATATGGTCTCGCATCATTGCCTGCCCTGCGC
TGCTGCGAGTGCTACACGTATACCCTGGTATTTGCATAGTATACAGATAG
GACTACTGTCAGCTTGTCTACACGAGGCAGTGCCTACAAAAAGACACCGT
CCAGGTGGTAGGGGGCGGGCGGTACGGTTCAAAAGGAAACCTCTCTCCTT
CATGCGCCGTGATTCTCATGTCTGGGGAAGGGTGTATGGTATTGTGGCTT
GATACAACTATGCAGTGTATGTATGTGTTATATCCGAACAAACAGCATCT
ATAATAGGTGTCATGTTTCAGTTCGATACGGCACTTGTACTGTTGTGTAC
TTCATTGTTTTTATTGTCTTCCTACTGTGAGGCAGGCGGTAATGAAAACA
CACGTAATAAAAAAAAAATTATCTCTCGCCCAAACACTATCTCGTTCAAA
ACGTTTGTGCCTAGGAGGAGAGGGAGGGAGGGAAGACGGGGAGAAGGAAG
AGCATAGTTTTTTTTTGTTTTTTTTCTTGGTTAACGGGGAGGACAAAAGG
CAATTTTTTTCAATTTGATGAAATTCAAGGGGGGTTAGGGTTGTGGGAAA
CATATGAACAAAAGTATTGGAGAATATATATATATATGTTAATCCAGCAT
GAGTCGGACACATCACTACTCTAGAACTCAGTGCAAAAAGATAGCCGGCT
TGATCGAGATGACGCGTTGTCTCCTCAGGTCCTCTTTTCTGTTTTTTTTG
CTATTGCCGCGGTTTCATAGTTTGATGCAAACACCGTGCTGGGCAGGGCC
ACGCGTCCTGCACACATCTGTGAGCTTTTCAGAGCGTGCCACGATGCTTT
CCGAAGCCACTACAGGGTACATGGATGATTTTTTATGTTTTCGAAGCAAC
CGCTTTTTGAGCCAGGTACATTCGAAAATGGGGTATAGCGGCTGTGCTGT
CTTTAAATGGAATGCTACTTGGTGGGAGTACAAGCAGTTCTGAAACGCTG
TCTGCAAGTGCGATATGTGTAGAGTATTACTGAACAAATGGATGTTCGGT
GTGATGCCTCCTTCGCGTTATAATAGATAGGTCTTTCTAAAAAATTGATT
CGCCGTGCCCTCTTTCTAGAAGTAACAGCAATACTACCGAGTTAGTAACG
TTGATGAGCATTTTATGATGGAAAATTAGCTCTCAAGCGTCATCCAGGCG
AATTTCTAGAAAAGAAACCCACTGGACGTTTATCTCACAGCAATCAAAGA
TACGATATTCAGCACACCTCCATCAGTCACGAGACAGAAAGAACTCCAGA
CACCGTTCCTGTCCTTGTACAAAACTCCGTATGTACTTCGGCTCGATCCG
TGCAGTTCAGGACCGTTCTTAACGTGGTGCATATTTTCCGTCGGGGGGTC
CCATCGTCCCGTTGTCCCGTTGTTACTTTTCGAAATTAACGAATCAGTCT
TTGGCAACGTTGTTCATATCCTCAAAAAAAACAAAAAACGGCAGCTTTTC
AGGCACGAAGAGCCTCAGCCCATCACTTCTCCTGTACATTGGGGAAAAAA
AAAAAAACAAGAAAAAAAAAAAAACGTGATGGAGAAAACGCTGATTGAGT
ATCCCTGAAGGTCCTGCTAACTGTCCCATCCCTCGCCCTCGTCGTGTCTC
CTGTTTGCGGTACGTCGGCGGACCATTGCAGTGCTGAGGCAGCCATCCAA
CCCTCCGCGAAGCCAGAGAGTCTAACGACGGGTGGCACCTTAAACGGGTA
CTCGGGCTCGATTTCTTCAATGCCACCCCGACTCCGGGAGAGAATAGCGA
ACGGAAGATTAAAGAGTATTCCAGAGTCTTTCGGTGGCTTGCCATTGCCT
CCGCCTGACAGATCTGAGGACAGCGACGCCGTTTGCGCGTCGTCAGGTAG
GATTACGATAGTTGCGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9583:2684..8105-

>mRNA_H-paniculata_contig9583.17289.1 ID=mRNA_H-paniculata_contig9583.17289.1|Name=mRNA_H-paniculata_contig9583.17289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig9583:2684..8105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATACGTCAGGGGCGACGGAGGGCGGGATGAGGAAAGAGGCCGATTC
AAGCTGCGATGATGGAGAAACGAAAAGATGGATACGTCAGGGGCGACGGA
GGGCGGGATGAGGAAAGAGGCCGATTCAAGCTGCGATGATGGAGAAACGA
AAAGTGCTGAGGCAGCCATCCAACCCTCCGCGAAGCCAGAGAGTCTAACG
ACGGGTGGCACCTTAAACGGGTACTCGGGCTCGATTTCTTCAATGCCACC
CCGACTCCGGGAGAGAATAGCGAACGGAAGATTAAAGAGTATTCCAGAGT
CTTTCGGTGGCTTGCCATTGCCTCCGCCTGACAGATCTGAGGACAGCGAC
GCCGTTTGCGCGTCGTCAGGTAGGATTACGATAGTTGCGAGGTAATGCTG
AGGCAGCCATCCAACCCTCCGCGAAGCCAGAGAGTCTAACGACGGGTGGC
ACCTTAAACGGGTACTCGGGCTCGATTTCTTCAATGCCACCCCGACTCCG
GGAGAGAATAGCGAACGGAAGATTAAAGAGTATTCCAGAGTCTTTCGGTG
GCTTGCCATTGCCTCCGCCTGACAGATCTGAGGACAGCGACGCCGTTTGC
GCGTCGTCAGGTAGGATTACGATAGTTGCGAGGTAA
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