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Homology
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A6H5L521_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L521_9PHAE) HSP 1 Score: 231 bits (589), Expect = 9.230e-75 Identity = 116/145 (80.00%), Postives = 126/145 (86.90%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYFDTG 438
VPY REG+ VA+WMPVSQ LQQSRIIMVG + +E +LIAMLLYHEK +P KK+SLYFNCPGALIRPALAVYDTLMHM PE+STLNLGLATGMVSFLCAAG +GQRYALPN+RFLMQRTGMED YQGQASDIGVEV D G
Sbjct: 78 VPYTREGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVGAKRDEG 222
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: D7FM45_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM45_ECTSI) HSP 1 Score: 229 bits (583), Expect = 2.110e-73 Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVR 420
VPY R+G+ VA+WMPVSQ LQQSRIIMVG + +E +LIAMLLYHEK +P KK+SLYFNCPGALIRPALAVYDTLMHM PE+STLNLGLATGMVSFLCAAG +GQRYALPN+RFLMQRTGMED YQGQASDIGVEV+
Sbjct: 8 VPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVQ 146
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A835YH32_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH32_9STRA) HSP 1 Score: 191 bits (485), Expect = 5.980e-58 Identity = 97/147 (65.99%), Postives = 116/147 (78.91%), Query Frame = 1 Query: 7 QVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYFDTGN 441
QVPYK G+ A+W+ V+QRLQ+SRI+MVG + DE +LIAM+LY EKE+ K VSLYFN PGA +RPA+AV+DT+ M STLNLGLATGMVSFLCAAG +G+R+ALPNARFLMQRTGMED Y+GQASDIG+EV Q N
Sbjct: 54 QVPYKPPGSDQATWVGVNQRLQRSRILMVGKFIDDEYANQLIAMMLYLEKESRDKPVSLYFNSPGANLRPAMAVFDTMQQMAFPTSTLNLGLATGMVSFLCAAGDKGKRFALPNARFLMQRTGMEDAYRGQASDIGIEVGQMVKKNN 200
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: F0Y3R0_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3R0_AURAN) HSP 1 Score: 160 bits (406), Expect = 8.690e-47 Identity = 81/140 (57.86%), Postives = 107/140 (76.43%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDELR--LIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQ 423
VPY+ G+ ++ + QRL + RI++VG+ L +E LIA+LLY E+P K +S+YFN PGAL++P LAVYDTL + V+T+NLGLATGM +FLC AGT+G RYALPNARFLMQRTG++D +QGQASDIG+ VR+
Sbjct: 34 VPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDDPFQGQASDIGLVVRE 173
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A7S2BG56_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG56_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.110e-46 Identity = 77/138 (55.80%), Postives = 109/138 (78.99%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEV 417
VP+K +G + ++P+SQRL + RI+++G+ L +E LIA+LLY ++++P K++SLYFN PGAL++P LAVYDTL M + TLNLGLATGM +FLC+AGT G R+ LPNARFL+Q+TG++D +QGQA DIG++V
Sbjct: 64 VPWKPQGMESHQFVPISQRLYRERIVILGNFLDEEAANNLIAVLLYMKQDDPNKQISLYFNVPGALLKPTLAVYDTLKSMECPIMTLNLGLATGMGAFLCSAGTPGLRFCLPNARFLLQKTGLDDPFQGQAVDIGLKV 201
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A8J2SWQ7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWQ7_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.320e-46 Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 1 Query: 1 ISQVPYKREGAQVASWMPVS--QRLQQSRIIMVGSELPDELR--LIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQ 423
+ QVPY GA+ M V Q L + RI++VG+ L +E LIA+LL+ E+P K +S+YFN PGAL++P LAVYDTL + V+T+NLGLATGM +FLC AGT+G RYALPNARFLMQRTG++D YQGQASDIG+ VR+
Sbjct: 40 VPQVPYSPPGAEQGQHMYVDIYQALYRDRIMLVGNFLDEEQANSLIALLLFMRFEDPRKPISIYFNVPGALMKPCLAVYDTLRTLECPVTTVNLGLATGMGAFLCGAGTKGMRYALPNARFLMQRTGLDDPYQGQASDIGLMVRE 184
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A6U3QDB9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QDB9_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.370e-46 Identity = 79/138 (57.25%), Postives = 106/138 (76.81%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEV 417
VPY + ++P+SQRL R+I++GS L +E LIA LLY +KE+ KK+SLY N PGAL++P+LAVYDTL ++ ++TLNLGLATGM +FLC AGT+G R+ALPNARFL+Q+TG++D YQGQA DIG++V
Sbjct: 65 VPYSPSAVEGHQYLPISQRLLMDRVIVLGSFLDEEQANNLIATLLYLQKEDREKKISLYMNIPGALLKPSLAVYDTLKSLKCPITTLNLGLATGMGAFLCGAGTKGYRFALPNARFLLQKTGLDDPYQGQAVDIGLKV 202
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A7S3K3R8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R8_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.080e-44 Identity = 74/143 (51.75%), Postives = 104/143 (72.73%), Query Frame = 1 Query: 1 ISQVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQ 423
+ QVPY+ G W + QRL + R+++V + + ++ LIA LLY + ++P K +S+YFN GAL++P LAVYDT+ + +ST+NLGLATGM +FLC AGT+G RY+LPNARFLMQRTG++D YQGQA+DIG+ V +
Sbjct: 45 VPQVPYQPPGTDYIMWTDIYQRLYRDRVLLVSNFIDEDKANNLIATLLYLKYDSPSKPISIYFNVAGALMKPCLAVYDTIRTLDCPISTVNLGLATGMGAFLCGAGTKGMRYSLPNARFLMQRTGLDDPYQGQATDIGLIVSE 187
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A0G4ERW5_VITBC (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERW5_VITBC) HSP 1 Score: 153 bits (386), Expect = 8.570e-44 Identity = 73/143 (51.05%), Postives = 105/143 (73.43%), Query Frame = 1 Query: 7 QVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYF 429
QVPYK G+ +W+ ++ RL + R+I VG L +E ++IA LLY E+ + +SLY N PGAL++P+LA+YD ++ + +STLNLGLATGM +FLCAAGT GQR+ LPNARFLMQ+TGME+ +GQA+D+ ++V + +
Sbjct: 8 QVPYKPPGSDFYTWVDLNTRLLRDRVIFVGRFLDEEAANQIIATLLYLRSEDSTRPISLYMNVPGALMKPSLAIYDAMIGVECPISTLNLGLATGMGAFLCAAGTPGQRFCLPNARFLMQKTGMEEGMRGQATDLAIDVAENY 150
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A7S2KWW7_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWW7_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.490e-43 Identity = 74/140 (52.86%), Postives = 106/140 (75.71%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRP--EVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEV 417
VP++ G+ A ++ + RL + RI+++G + + ++I++LLY +KE+P KK++LYFNCPGA +RPALAVYDT+M + ++STLNLGLATGM S LC GT+G R A+PN+RFL+QR G+E +QGQASDIG+EV
Sbjct: 68 VPWQPPGSDYAQFVDIYSRLYRERIMLIGKFIDQQEANQIISILLYLKKEDPDKKITLYFNCPGAELRPALAVYDTIMQCKETCDISTLNLGLATGMASLLCGCGTKGMRAAMPNSRFLLQRVGLERPFQGQASDIGLEV 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 161.0 |
| Seed ortholog evalue | 4.3e-37 |
| Seed eggNOG ortholog | 44056.XP_009034839.1 |
| KEGG ko | ko:K01358 |
| KEGG Pathway | ko04112,ko04212,map04112,map04212 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0010287,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840 |
| EggNOG free text desc. | serine-type endopeptidase activity |
| EggNOG OGs | COG0740@1,KOG0840@2759 |
| EC | 3.4.21.92 |
| COG Functional cat. | OU |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01002 |
| Exons | 3 |
| Model size | 447 |
| Cds size | 447 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9573.17283.1 >prot_H-paniculata_contig9573.17283.1 ID=prot_H-paniculata_contig9573.17283.1|Name=mRNA_H-paniculata_contig9573.17283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
ISQVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDELRLIAMLLYHEK
ENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFL
CAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYFDTGNW* back to topmRNA from alignment at H-paniculata_contig9573:3703..4831- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9573.17283.1 ID=mRNA_H-paniculata_contig9573.17283.1|Name=mRNA_H-paniculata_contig9573.17283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig9573:3703..4831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATCACAGGTTCCCTACAAGCGTGAAGGTGCGCAGGTGGCATCATGGAT
GCCGGTAAGCCAACGTCTGCAGCAGTCGCGCATCATTATGGTGGGCAGGT
TCATCGATGACGAATACGCGAACCAGGCGAGCAAAAGAAAGAAAAATTAA
TAAACAGTTAGAACTTACATGACGGGGGGTTTAACAAGAACGTTTAAGAA
AAATGAATTACCTTGCGTACCTGTTGCTATTGGGTTGTTGCTAACGTTGG
CTGTGGAAATTTGATCAGCTTAGTTCAAGCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGACCGATTTTGGTAACTTCAACATGAGTACATCGAAAAAAAAA
AAATGAACTGTATGTCGTGGCTTGAGTAGAAAGCGAGTTGCCCGATGAAT
TGAGGGTTCCCACGTCAGTTGTATATTCTTGAGTGCTAATTTGTAGGTCA
TGTTATACCTGCGCTCAAAATCGCACGGTATTTAATCCATTTTTCATTTA
TTTTTATTATGTTCATTCTGACACAGGGAAAAATAGGTACAGTGAAGTAG
TCGGTGAGGTTCCATGGGTGGGCTCATATGACTGACAGTTATGCAGTTTG
AGGTCGTGAAGTCTATACTCGAGAATTCCGATTGATTTAGTTTTGGTGAT
AAGTATATATACTGCAACTGCCTATTGAAGTCAGCTTGATAACCTCAACG
TGGATACAATGGAGTTATGGTATGAGGTTCACAGTTATAGTTCGATGCTC
AAGGAGTCCCCCCCCCCCCCCCCCCCGCTTTCTCATGTACTCCTGTATGT
AGCTGATCGCCATGCTGCTATACCACGAAAAAGAAAACCCGGGCAAAAAA
GTGTCTTTGTACTTTAACTGTCCGGGGGCGCTCATCCGACCCGCTCTGGC
GGTGTACGACACGCTGATGCATATGAGGCCGGAAGTGAGCACGCTTAACC
TGGGTCTGGCCACCGGCATGGTGTCTTTCCTGTGTGCGGCGGGCACGCAG
GGGCAGCGATATGCCCTGCCTAACGCGCGATTTTTGATGCAGCGCACGGG
GATGGAGGACGTGTACCAGGGACAGGCGTCGGATATTGGAGTCGAGGTGC
GACAATACTTTGATACTGGAAATTGGTAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig9573:3703..4831- >mRNA_H-paniculata_contig9573.17283.1 ID=mRNA_H-paniculata_contig9573.17283.1|Name=mRNA_H-paniculata_contig9573.17283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig9573:3703..4831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATCACAGGTTCCCTACAAGCGTGAAGGTGCGCAGGTGGCATCATGGAT
GCCGGTAAGCCAACGTCTGCAGCAGTCGCGCATCATTATGGTGGGCAGAT
ATCACAGGTTCCCTACAAGCGTGAAGGTGCGCAGGTGGCATCATGGATGC
CGGTAAGCCAACGTCTGCAGCAGTCGCGCATCATTATGGTGGGCAGCGAG
TTGCCCGATGAATTGAGGCGAGTTGCCCGATGAATTGAGGCTGATCGCCA
TGCTGCTATACCACGAAAAAGAAAACCCGGGCAAAAAAGTGTCTTTGTAC
TTTAACTGTCCGGGGGCGCTCATCCGACCCGCTCTGGCGGTGTACGACAC
GCTGATGCATATGAGGCCGGAAGTGAGCACGCTTAACCTGGGTCTGGCCA
CCGGCATGGTGTCTTTCCTGTGTGCGGCGGGCACGCAGGGGCAGCGATAT
GCCCTGCCTAACGCGCGATTTTTGATGCAGCGCACGGGGATGGAGGACGT
GTACCAGGGACAGGCGTCGGATATTGGAGTCGAGGTGCGACAATACTTTG
ATACTGGAAATTGGTAACTGATCGCCATGCTGCTATACCACGAAAAAGAA
AACCCGGGCAAAAAAGTGTCTTTGTACTTTAACTGTCCGGGGGCGCTCAT
CCGACCCGCTCTGGCGGTGTACGACACGCTGATGCATATGAGGCCGGAAG
TGAGCACGCTTAACCTGGGTCTGGCCACCGGCATGGTGTCTTTCCTGTGT
GCGGCGGGCACGCAGGGGCAGCGATATGCCCTGCCTAACGCGCGATTTTT
GATGCAGCGCACGGGGATGGAGGACGTGTACCAGGGACAGGCGTCGGATA
TTGGAGTCGAGGTGCGACAATACTTTGATACTGGAAATTGGTAA back to top
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