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Homology
BLAST of mRNA_H-paniculata_contig957.17281.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI) HSP 1 Score: 182 bits (463), Expect = 6.280e-45 Identity = 190/410 (46.34%), Postives = 223/410 (54.39%), Query Frame = 3
Query: 681 RELPSLRPELRAMFQDPGECHTFKLPDKEQNQWLRRANRAAA------------------------HYHSTANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSPPSGLVPXXXXXXXXXSAREGKRSRLVSPRRSKSERSKSPKRKEGIQASP-------------RRREALKRLVYMVRRKGGSGAVGGKRSRGVGGGDASSSLSMFRLLHVDIFQVPPGNHLHRMDHIVGIEGGRAQARVQQLTSQKGETGGFTFVFVVNIQLPRTFTKKSWAASVVLYWGIPEEALAGSLSSTDEKEQDHTSPSPSPPLHTXXXXXXXXXXXXXXQHPHSPVSTQILADAALANESMMMMPPFERELLQRYIDLPFNRLSGAICTGSSASGFVTNDPTA 1799
R +PSLRPEL+ MF+DPGECH ++P E NQWLRRANRA+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXX PV+PP + +R+VSPR S K G +S RRREALKR V +V+RKGGS KR S F+LLHVD+FQVPPGNHLHR+DHIVG GGRAQARV+ LTSQ G GF F+FVVN+QLPR+FTK + AASVVLYWG+P E L G+ +S D + +P P XXXXXXXXXXXXXX A FER+LL RYIDLPF+R+ GS+ SGFV+++ A
Sbjct: 738 RVIPSLRPELKTMFRDPGECHALRVPKHEHNQWLRRANRASATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADVSGNGAGTSPTFPVTPPGTVTG----------------ARVVSPRGDYSANGKHA----GTPSSXXXXXXXXXXXXXXRRREALKRFVSLVKRKGGS-----KRGH-------RPYASGFKLLHVDVFQVPPGNHLHRVDHIVGRAGGRAQARVKDLTSQPG---GFKFLFVVNLQLPRSFTKNTSAASVVLYWGVPAECLGGAGASP----LDFSRCTPPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA----------FERDLLMRYIDLPFHRM------GSNGSGFVSHEQAA 1092
BLAST of mRNA_H-paniculata_contig957.17281.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.320e-23 Identity = 178/460 (38.70%), Postives = 214/460 (46.52%), Query Frame = 3
Query: 681 RELPSLRPELRAMFQDPGECHTFKLPDKEQNQWLRRANRAAA----------------HYHSTANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------PVSPPSGLVPXXXXXXXXXSAREGKRSRL-------------------------------------------------VSPRRSKSERSK--------SPKRKEGIQASPRRREALKRLVYMVRRKGGSGAVGGKRSRGVGGGDASSSLSMFRLLHVDIFQVPPGNHLHRMDHIVGIEGGRAQARV--QQLTSQKGETGGFTFVFVVNIQLPRTFTKKSWAASVVLYWGIPEEALAGSLSSTDEKEQDHTSPSPSPPLHTXXXXXXXXXXXXXXQHPHSPVSTQILADAALANESMMMMPPFERELLQRYIDLPFNRLSGAICTGSSASGFVTNDPTA 1799
R +PSLRPEL+ MF+DPGECH ++P E NQWLRRANRA+A + S A+TXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX P +PP+ V SA G+R L SPR + K S KRK+G +SPRRREALKR V +V+RKGGS KR S F+LLHVD+ +P G RA +T + GGF F+FVVN+QLPR+FTK + AASVVLYWG+P E L G+ S D + SP P XXXXXXXXXXXXXX A+ ER+LL RYIDLPF+R+ GS+ SGFV+++ A
Sbjct: 570 RVIPSLRPELKTMFRDPGECHALRVPKHEHNQWLRRANRASATTSSSLXXXXXXXXXAQFVSPASTXXXPTLSRPPSDEGMXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSGNSAGTSPTFPATPPN-TVTGAWASPRGDSAANGERRWLFQNVFLRRYGGMQALIRAGAXGGADVSGNSAGTSPTFPATPPNTVTGAWASPRGDSAANGKHAGTPSSSSAKRKDGA-SSPRRREALKRFVSLVKRKGGS-----KRGN-------RPYASGFKLLHVDVANLP-------------YSGARAVLSFFGDAVTIFVSQPGGFKFLFVVNLQLPRSFTKNTSAASVVLYWGVPAECLGGAGVSP----LDFSRCSPPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPLAVV----------ERDLLMRYIDLPFHRM------GSNGSGFVSHEQAA 982
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 172.2 |
| Seed ortholog evalue | 4.6e-40 |
| Seed eggNOG ortholog | 2880.D8LI57 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | macromolecule localization |
| EggNOG OGs | KOG1471@1,KOG1471@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 9 |
| Model size | 1823 |
| Cds size | 1107 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig957.17281.1 >prot_H-paniculata_contig957.17281.1 ID=prot_H-paniculata_contig957.17281.1|Name=mRNA_H-paniculata_contig957.17281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=369bp
MFQDPGECHTFKLPDKEQNQWLRRANRAAAHYHSTANTTANSSVSTSTSM
SLSSSSSRRTTLASNNSGSSLGSHLSEGLGEVPVSPPSGLVPGSASASAS
PSAREGKRSRLVSPRRSKSERSKSPKRKEGIQASPRRREALKRLVYMVRR
KGGSGAVGGKRSRGVGGGDASSSLSMFRLLHVDIFQVPPGNHLHRMDHIV
GIEGGRAQARVQQLTSQKGETGGFTFVFVVNIQLPRTFTKKSWAASVVLY
WGIPEEALAGSLSSTDEKEQDHTSPSPSPPLHTPPPPTSPPPSQLPPQHP
HSPVSTQILADAALANESMMMMPPFERELLQRYIDLPFNRLSGAICTGSS
ASGFVTNDPTAHGTASGKA back to topmRNA from alignment at H-paniculata_contig957:593..15415+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig957.17281.1 ID=mRNA_H-paniculata_contig957.17281.1|Name=mRNA_H-paniculata_contig957.17281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14823bp|location=Sequence derived from alignment at H-paniculata_contig957:593..15415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTCTCCCTGGTACAAGAGGCGTGTCCCGGAGCGGAGGGCACCGACCG
AGATTCCAGGTAAGAGGATATACATTTTCCACCACAAATGGCGCCTTTTG
CTTTTGGGAAATTTGCCGATTTTGACATGGAGCGTCGTATCTCCCTCAGT
TGTAGAACAAGGCCCAAACAGCATATTTTCATAAGCTCAAGGCGGTGGAG
GAGAGGGTACTCATGCTTTGCATGCAGTAATCTTTAGACCGTTGACCACG
ATTCCTCGGGAGGACGGAGGACAAGGTGAAGCGAGGGGAAAGGAGAGGTC
GCTAGTATCGCCGCGTTGTAACATGAACTGCTCTGTAAAAGTGCCGTTAC
GCAAAAATGATCTCCATTAGGTGGTCGAGGTTAGCCCAGTATCCCTGTAA
TGCGTTTATTTCTACACTTTTTTTCAGTTTGGCGGCCAATGATCGCGGGT
CTGAGAGATCCACACGAGACAATCCGAGCAAATGAGCGACTGCATGGGAT
AGAGCTACATACTGCGGTACTACTAACACAGCGAAAAACGAATGTGTCTT
GTCCCAAAAAAGAGAGGCAGGGGTGGGGGGGTCTTGGAGTTAAAAATATC
TCCGGGTAGCCGGGGGACGACCGGATACCATCCCTGGGTTTTTTACTCGA
GAAATCAGAAGGAACTTATACTAGCCATTTTCGCACATGATGCCCACAGC
TTCAAGACCTGTTGATAAATAGTCTTGGAAATCATGTCTACCGCTGGCAG
CGTTGACCATGAACCGAACAATGGCAGAATCCAAGAAGGTCGGAGCATGA
AGAAAGCTGTGACTCCTGAGTCCCTGAAAGGCAGCACCAGCACTAGCAGA
GGTGTTCTTCCCGCCCACAGCAGGGTGGCCGTCGGCCAAAAGAATAGCCT
TGCCGCTGCTTTTGCCGTTGAGGAGCTCACTAAATTACAGTTAGCTCTGC
GTGCTTTCGAGTTATTCGATTCCTTGTCTTGGGGTGTCTGAGCAACATCT
TTAGCCATAACATGCCCACTATGACCATGCGGATAAGGTCTTTTGATGAG
CCACCGTTGCGCCAACGAGCTCCATTTCACACCCCGGAGGAATACGAAAA
ACTTTGAGCACTCACAACGAAAATTGAAGACTATCCCCTGAAGGTTGAGC
ATGAGAGCACCTTCACCTATGTGCCTCGGACCGGCCAGAGTGGTATTATT
TACCTCAGCACACTAACCTCTCATCACGTCGGTTCTCGTATATTGTCATA
CCACACATGACGCTTACTTCTTGACGGTGAATTCCGATTTTGAAGTTAAT
CATCAGAATTATTTATCGCAGGACTGTAATCCTAGTAATGAGGGCATTCC
CCCCTTATATCGTCATAAATGAGTTGTGGTTTCCCGAATATTACCAGCCG
CTGATGTACATCCCTGATCTCACGATGCGTGTTTCTCCCACATTGTCGCA
GACCATTCTTGATTTCCTGGATACTGTGTGCCAGTCATGTAGACACCCTC
CTGATCCCAGGATGCGTTTTCAATTTTAAGGTCATACTTAATTTGCGATA
TCCTGAATATTGCCAGCCGATAATGCATGTCTCTCATAATTTTATTTCAT
CTTCCATTCACGATTTTTCCGATTATTGCGTATCGATTTTGGGGTATAAA
GTATGACGTACCCAGTTTTATCGCAGCGAGCTAAGCCTTGGTAGTTAGCT
CGTGTCCCCGTTTTGTGGGGACTCGCACCGTTTGCGATTTCCCGAATATT
GCGTACTTGTTATTCATCAAGATAATACATGTGTCGCTGATATCAGGATG
TGGAGGCTCCCGCCAGTTGTGCCGTTCGTCGTGCTTGCCCCGCGGCTTGA
GGCATACCTCCAGCGGCTGCTTGAGTCTGGAGAGTCATCAGACAGAGAGC
AGGTGGGACAAAAAAGTGTAGAGATGTCGAATGAACCCTGTTTTCTTTGT
GCTCCGGAGACTGTTTAAGAAGCAGGCCATGAACCTGAAGACAAATGTCG
AGCACTCATGTGCATAGTTCATTATGCACATAAAACATGAAGTACACATT
GTCGAAACGTTGTTTTTGGTTATCTTCCAGTACTTGGTCATTTAATATGT
GTCCGTTTGTTTCATTTTCCAAGTTTGTGCTGTACAGTCATGTGTGACTC
GATTGCTTTTGTTCCTCCTGCACAGGTAAAGGACGCAAGGAAAATCACAG
CCTTACTTTATCTTTTCGCTGTTTAATTTGAATGCCATCAGCCCAAATGT
ACATTTCCTTTTATTCCCTCCAATCCTGCACAATGTGCTGATGTTCTAAA
TAATCGAGATAGCGGAATGCGTATCCCTGTAAAAACAGCGGAAGCCCAAT
TCGCAAAAGCAATGACACTGTGTGTGTATGTCCATCCCCGGGCCGACAGC
CCCTTTTCACACACGCATTCCACGTGGCGCCCCGCTGTTGAAGCAAGAGA
CTGGCCAGTCCCCTGGACAAGGCGTAGCCAATGCTCTCTGACCCCCTCCC
TCCTTGGGTGGTTATAAGTCCCTGCTCAGTATATAGCTATGAATGTAGGC
GGGGGATAACCCTGTATATCAATAGCATGAAACTCATGTATGCGAAAATT
ACTGTAAATAGTGGTTACAAATTCCAAGACACATGTACTTTTTTTGTGAG
TGCAGGTTTGAGAGTTGAGTGCTTGTATTCGTACGACTCTTCATTTTGTG
CCAGGCTATATTACCTATATGCACATCACACACGCGAGTGATTCAATTTT
ACTCCCCAGCAGATGCTGTTGTCCACACACACCCTAGTCTGTTTACTTTG
TGTATATAAGTAGTCCAGCGACTTCAAAGTGCTGAGCTTATGTACCTCCA
TCCTGTTTTCCCGTTGCTATTCTCCCCCCGCCCCCCCATCGCCCATCTCA
CACCGCCGCTTTCTTACCCCGCACACGGTCATCATGATCATCACTATCGC
CACTCACTCCAGCTTCGAGCTTTTCTCGGCGCGGACCCCATCACCGGACC
CCCACCCCACCCCTACCTTTCAACCGTGGACGCCACGGGCACCCTCCCGC
CAACGACCACCGCCAGTGCTAGTGCTAGTGCTGCTACAAATGGCATCGCT
ACCGCCGTCGACGTGGACCCTGCTGCGTTTGCAGTGTCGGCCGGGGGCGG
CGGCGGTGATCAGGCCCGCCGCATGACAGCCCCGGCCGCCGTCGCAATCC
CTCGCTCGACTTCATCGTCGTTGTCATCGGGCATGGCCACGGCAAGGGCG
GTTGAGCAGCGGCCGCCTCCTGTGTCTGCGGACGCGTCAATCGGTTCTGT
TGTGATCAACGCTGGGCTTGGTGGTGGTAGTGGTGGTAGTGGTGGTGGTG
GTGGTTCGTTTCGGTCGCGGCAGGACTCTTTGTCTTCGACCGGTGATGGT
GGCGGCAGCCGCAGCACTGGCGGTGGTGGATTGGCGGACTCTGAGAGAGA
TCTGGTTGAGGTGGACGCGAAGGATTTGGTGGTGGCTAGCGCGCTGAGGG
AGCTGCCCAGCTTGCGGCCTGAGCTGAGGGTGAGAGGTGTATGGAGGTGG
TGGGGGGAAGGTCTTGTTCGTGACTCATCCTGGCCACAGTTAGTTGAACT
ATAGCTCTGAAGCTCATATAAAACCTCTGTTGCATTCATATTGGTCGACG
CTTATGAGCAAATTAGAGGATGACCAGTGAGGGGCAAGTTTTGGGTTAAC
GGCTTTAGAAAGGGAGGTGTTTGTTAGGTTGGTTAAAGTGATGGTCGTCG
GTTTTGTTTTCATCAGTGTTGAGTTGAAGAAGTGGTACTAGTATTATATG
TAGTGTTTAGCGGTCTCGTGCTCCTAGCTGAGTATGTCCTTATTTCTGCT
GTGTCTTGTTAAGCCAGAGCCCTCTCGGTTCCGTGTTTTTCGCCATTCGG
CCTGAGGCTGCCAGCTTACTGTTTTAGCCTCAGCCGAATTGTCAGCCCTC
GTATATTTGATGTATATATATAGGACTTCAAATGGGGCGACCAGTCTAAC
ATAGCTTACTAAGAATAGTTTTTTTTTTTCTTTTTTTCCTCCCCAAGAGT
TTGAGCCTTGGTTTTCCTTCTTCTTTTTTTTCTTTTTTTTATCATTGGGG
CCGCATCTGTACCCCAAAACTAGGCCATGTTCCAAGACCCAGGTGAATGC
CATACCTTCAAGCTCCCAGATAAGGAACAAAACCAGTGGCTTCGCCGCGC
CAACCGCGCAGCCGCGCACTACCACTCCACCGCTAACACCACCGCAAACA
GCAGCGTCAGCACCAGCACCTCCATGTCGCTGTCCTCATCCAGCAGTCGC
CGAACCACCCTAGCCAGCAACAACAGCGGCTCTTCTTTGGGCAGTCATCT
GAGCGAAGGGTTGGGGGAAGTCCCGGTGTCGCCCCCCTCTGGGTTAGTGC
CGGGGTCTGCGTCGGCGTCGGCGTCCCCAAGTGCTCGGGAGGGTGAGTTC
CGCTTCTTTTTCGGGGGGAAGGGTGTGGTCATGTTTTGCATGTCGTGGTT
ACTACATCGTTGACATGTCTCTCTTTTTTTGGGCGAAGGGGTGTTGATGT
TTTTCATTCCGCAGTTGTAAGACCATGGGAGGATGTGGGGGGCAGGGTAT
GTGGTAATGCCTGCTCCCAATAAAATGATTTTGAAACATGCGTATATATA
TTGTAAGTCGCAAAACTTGTTACATATGGCAGTTTTAGGATAAAAATCTG
GATTTTCATGCTGAGGTTATGTAGGTAGGTCATGGATCTCGGCTATGTTT
AGTCAGGAGCTTGAAATCCGAAGAGAGGGGGCAGGGGGAGAGGGGGGGGG
GGAGGGAGGTAGTCTCCTTGTCATAACGAATCCTTTTCATTAAAGGACCT
GCAGATAAGTATTATTATTATTATCATCATCATCACTAATACTAATACTA
TTGTCATTGTAATATATCTGAATATTTCTCTTCATTGGCGTCATACGTCG
TCTTGATATTTCGATGTTGAGTATTGGCATGACTGATGTATCGAGTTTTT
TTTATTATGCGGTACCTTGGTTACTCTCCGTTGAATGTTTTTTGCTCCTC
TGTCATTGTCCAATGCATATAGTCGTAAATTAGGCATCGTAATGAAGCAA
GTTTATCAAACCGCGTGTTTTTCCTGGCAATGGTTCACTCTCACTTTATA
CCACCAACTCTTACTTCACCTAATATTTTCGTGTTTCACTATTCGTTTTT
ATTGCCCAATACGCCAACGTATGTATTATTCATTCTTTCATCATATCGGC
AAAGGATTTTTATAACCAAGATGGAGCTTTTTGTAGAAGACGCCAGAATC
TCGGAGAAGAACCTCGTGCCCGTGATTCCATATGTCAGATGCCATGCATT
TGCAATACATGAAAGATACGAACCCATGCATGGTTTCCGAACTAGGTATG
AAAGAGGACATCTCGCGATGAGGCTCTTTGTCTCGACCCTTGAATCGCAT
GGATATTGATCTCCAAATGTTGGCCGGAGCTCTGGAGACAGGGTTTCCAA
GAGGAGTCCTCGACCTACCTCAACAAATGTAGAACTCTTCCGCATCTTGG
ATGAAGGTTGATGAGGGCCAATGAAGGTCATCACAGATTTTGGAACATGA
CTATGGTAGCATAAGGATTTTAATGCTTTCCAAAGAAGGCGTTCCCACCG
CTTTGTGGAGTGTTGGAGTTTTAACGATACGAGCGTACGTACGTCATCCA
TCTACACATTTAGTTCTCCTTAAAGCGTGATGGTTAGACCGGGGAGAAAC
TTGACTCTCCTTGACATATAAGCTCTTGCTTCTCGAGATAATTGAATTTG
GGAAATAAGCATCAGGAGGTGCGATATCGAAGGGTGTCACGGTAAGTTGG
ACGGCAACTTAATCGGAGGCTTCGTTGGCGCCTGAGACTTCCGGACAAGG
GCCTCCATTTGTTAATAATAACTTCACCCACCGGACAAATACGAATATTT
CACCCACCGGATAAACACGAATATTTCACCCACCGGACAAATACGAATAT
TTCACCCACCGGATAAACACGAAAATTTCACCCACCGGACAAATACGAAT
ATTTCACCCACCGGACAAATACGGATATTTCACCCACCGGACAAATACGA
ATATTTCACCCACCGGATAAACACGAATATTTCACCCACCGGACAAATCG
CGAATATTTCGCCCACCGGATAAATACGAATATTTCACCCACCGGACAAG
TACGAATATTTCACCCACCGGACAAATCCGAATAACAGACACGAGTAAAC
ACGAGAAACCAACCGTGAACACTGTATTCTTAGTGTGCGTGACCAGTTGA
ACACTCGAGGAAATACCGATGAGATCTATATTGTACTACCCGATAGACAG
CAAGAGGTGTACAGCGATCGTATGTGCGTAGAAGTTCCGAACCTTTGGAC
TACTCTTCACCACGATGCGATCTGCCCTGTACGACCCGATAGACAAGAAC
AAGTATAAAGCGATTGTATTAGCATTGAGTTCCCGACCCTTTAAACTACT
CTTCACCACTCGAGCAGTCGGGGAAATACCGATGAGATCTGTACTATACT
AACCAGAAAACCATCAGCTGTACAGCGAATGTATGTGTGTTGAAGTTCCG
AACCTTGAAATTTCTCTCCACGCTGTACGTGTTTGCTCGTTAGTGATGAA
ATACGTTGGTACTTTTGGGGTATGTAGACCTTCCCTGTCCTCGTTGTGTG
TCACGTGCCCCCGTTGCATCACTCACTACTGTCCACCAGTTAGTCTGACC
GTTCTCGCACTGTGAAGGCAAGTTAGGTACAAGGTAGAATTTGCAGTAGA
CGGTAGGCAAAGGCGATCGCGGCATGCTCAACACCTGCCCAAGGCCCGCA
GGCAATACCGATCGAAGCTGAGTCCATCGACAGCGGAGTCAGCAACACGC
CAGAGATCGACTGACATGGCGTGGGTAGAAATGACCCTGTTCTTGGACCG
GAACAAGGACCTCCTTCCCGACAGCGTGTCTGCTCTTACGGAGGATCAAG
CGTTGGATGCTATTCCTGGGCAGCTGCGAAACCGGGTCTCTGATTTACAA
TATCTCAACGGGCTGTTCCGTACGATATTGGACGACGGGGACGTAAAGGA
TAAGCACGCCTTGGATATTTTATAGATCACGGAGCACGAAACTAGTTTAT
AGTTTGTATTTTCGTTGGGTGGGGTTATGGAGTCTATACCTCGCCGGTAT
CCTCGGTGCAATTACGATGGTAAGTGTTCTTGGAGCAATTGCATTTGGTG
TACGATACACGCTAAGTACTGGTGGTGTTTGCCTCGTTCAGGTGGCTTCC
ATTCTATGAGGCAAGTGCAGTAAACACACCATAAAGGAAACAGTGGTACA
GATCACCGGTAATATAAGGGCAATGTCCGGGTACCGGCGAAGCCATTTCT
TGACCGTGTTTGCCGTTTTGTCTGCACTCAATTGCAACGTTAGGACAGTC
TGCATCTGCTATTACAGTTATATTTCATGGTAGACTAGAGGGGGAGCTCT
CGCCACAGGTTGTGGGGAACTTGGCGAGGTAGACTCTGCCGTCGACACCA
ACAAGCGTCCTTTTCTACACGATTTCAGCGAAGGGGTACCCCCATTCCAG
CGACAAGTGTCACACGATGCCATCTACAAAAAAATTCGATATCAGACCAG
ATGAAGCCTGAAAGAAATAGGGCTGCCATGTGAATCGCGATCTATTGTGT
TCGAGCTCGTCTGCTATATTTTTTTACTTCAATCTCGGCAACTGAGCGTT
CCAATACCGATTAATTTGGTTGCATCACTAGCCAGACATTCGAATGGTCG
CGTCACCATCCGAGCGGAGTATTTGCATGAATGAATACCGGCAATAACGC
TTGTAGTGGAGTACTTGTGCATGAATGATCAAGTGTAAATAGGTCCAGAG
AGAAGCACTCTTGTAGATAAATACAGCTGCAAATGGATCCCAAGTGAAGC
ATTCTCGTCGATGAATATGATTGCAAATATATCCCCGAGTGAAGTTTTTC
TTGTGGGTGAATACGATTCCGAATGGGTACCAAGTGAAGCATTTTTGCGG
ATGAAGACAAGTGTAAATGGGTCCTTAATGAAGAATTCGTGTAAATGATT
TCACATGACACAGCAGCTTTTCCAACATTCGTCCGACGAACATACGCTCG
CCCAACGTTCGGTTACAGACTGTATCCACAACACATTCGTATTCACCAAA
GACAGATAATTACAGCGTTCAGATGGTTACGAATGCACTGTTCGTTTTTG
TCCGGGGGGTGGTATACTTGCATATGGTTTTGTCGAAAAACTAAAAAAGT
ATTCGCCTGAGTTTCACAATGAGCTCGTGTATTACATGTGCCCCGGATCA
TCCATGAATGCTAATAATTCTCGTAAATCGAATGGACAGGGATGGGGTAC
TTTATTCTACGTGCCGCTCATTCTGAAGCTCAGGTAAATTCTTTCAGTTT
TGAGTCAAAACCGTTTGCAATTATTCATTCGTTTGTCCGGGGAGTGAATA
ACTTCTTAATATTGAATACAGCAGTTTTTGTTATTTTTCTTCACCTCCTC
GTCCTTGTCCTCGTCCTCCTCCTCCCATGTACGCTATGTCGGAATTTTCG
ATCAATATACCATCCGAAGTAAGTACGTACCCCCCCCTTGGTTATTATCC
AGTTGCCCATTCAGTGCTTTTTGACATGGAAATGGGCTACATATTATTAA
TAATGTTTAATACCCGTCCCCCCCCCCCCAAGTTTGTTCAGGATGTGGAT
AACAACCAAGTAATCCCGCAGCTTGAAGATGTTCAGCGTACATGCCTCCG
TTTTGTTTTACGGTTTTTTCATGTGTTAGATCATTCATCAGTTTATTCAT
CTCTGCTTCTACTTTCGACTCGCTCCTTATTTAGTCTTTGACACTTTTTT
CAAACCTTATTCTCGTACCCCCGCCCCCCCCCTCCCCCCCCCTACCCCCC
CCTACCCGCCCCTACCCGCCCCTACCTCCTCGACCCATTCGTGCTTGTGG
CCGCCGCTACCGCCGCTGCCACCGCCACCGCTGCTGCCTCAGGTAAGCGC
AGCCGTCTAGTCTCACCGCGGCGTAGCAAGAGTGAGCGATCGAAGTCACC
TAAGCGAAAGGAAGGTATACAAGCCTCGCCTCGGCGGCGTGAAGCGCTGA
AGAGGTTGGTGTACATGGTCAGGCGAAAAGGCGGCAGCGGCGCCGTCGGC
GGCAAGCGTAGTCGGGGGGTTGGGGGGGGCGACGCGTCGTCCTCTTTGTC
CATGTTCCGCTTGCTTCACGTCGATATTTTTCAGGTGAGTGGTGCGTGCG
TGCGTGCGTGCGTGCGTGCGTCCGTGGTGTGTCTCTGTGTGTTCGTGTTG
GTTTGTTGGTTTGTTGGTTTGTTTGAGTAAAGAGAGTGGTCGTTTGATAT
TAATGTGGAAAATGGAAATGGGGTGTTACCGTGTACGATTGTAGCTTGGA
TGACTGTTTGCTATACCGTGTGGGGCAACGTCGTTGGTGCGTGAGGAGCT
TACTGGCGCTTTCAGCCCCGTGGTTGTTATACTTTGGAAAATGCATGAAG
GTTTACGACGAACTGTTCAACGGATGACATTTAACCTCTTGAACCAGTGA
GCGCTCACTGGTTCAAGAGGTTAAATGTCATCCGTTGAACACGAACTTCA
TACACAGTTAAGTCTTCCGAATGACTGTTACTTGGTGTGGGTCATGTACA
GTGTTTTTTGTGGTTCTCTTGATTTCCATATTGAAATATATATATATATA
TATTTCAATATATACTAGTAGTCGAGTCACGGTTGAACCCATGTATGATC
CTTCAGTTTTTATTTTATTTTTTTATTATTATTATTTTGTTTATCTATAG
GAGATCAGGACAAATCAAGTGCCTTGTCTGTCGACCTAGGCTCCAAAAAG
TCTTTGCTCTTTCGTATCCTGATATACGTACCATACTGAATGTTTTATCA
GCACTTGTCACGTATAACAAAAAACACCAGCAAGTGGTCAAAACAAGGAA
CCAATCAGGCTCCAGATATACTTCAAGTCTACGTCCTACAACAAACGCGA
CAAGTGAAACCGGAACAGTTGAAACCCGCGCCACGTGTCAAAAGTGTAAA
CTGCTGAAAACAACATTGCGAGGTTGGAAGGTTTACACCACCCGAACAAA
TATGAACGATTCATGTATTCGCCACGAAATTGAAGACATGATCGCCTGAG
TTTTAGAATGAGTTTGTGTATTCTGTGTGTCCTGGATCATCCACGACTGC
TAATAATACTCGTAAATCGAATGGACAGGGGTGGATAGGGTACCATATCT
TATGTGTCCGCTCATTCTGAAATTCAGGTAATTACTCGTTAATTTTCATG
GCAAATATGCCAAGTATTCGTATTTGTCCGAGGGGTTGAGGCTTGCACCG
CTGCACGAGCCAGATGGAATCGTGTGCGGCACTTTTAACGTTTTATTTAA
TACATCGAGCGCTTATAGGGGGAGTGGAGTACAGCTACGGATAGGTTCAT
GCCAATTATGCTTTGTTCTCGACCCACGAACAACCATCCTGCGCTCTCCA
CTAGGAACGATGTCAACAAAAAGATTCATTTTTCATAAACTTCCTGAGAG
TAGACTTGAAAATATGTTCCGGAATGACGAGTATGACGACAACCTCACCA
TATCGTTTGAGAAGGATATATGATTGCCCTCGGAAAATAAGCATGTGTAG
CCTATACCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT
TGTGGTATTTCGACAGGTGCCTCCGGGCAACCACCTTCACCGGATGGATC
ACATCGTCGGCATAGAGGGAGGGCGCGCGCAAGCTCGGGTACAGCAGCTC
ACCTCCCAAAAGGTGATGTATGTCATGTCACCACCGGTGCATGCAATACA
TGCCCTTTATCGTTCTACGGCAAAAACATGATGTGTGTAATATTACCGTG
GATAAAAGCACATGCACTTTGCGTTTTATGATAAGAACATGACTTCGCTC
TGTACACCAGCTCACGTTCCAACACGTTATATATGTAATTTCATCGTGCC
TACAACACACCTGTTTGTTGCTTGTAATAAGGAAGAGGTGACTTGGCTCT
CAGTTCGCTGCCAAAGGGACGATTCCTTCGCAAAAGCCGTTGATAACACA
GGTGGACCCTTGAAGCCCCCCCCCAAATCTACTGGCACAGTTGTAGCTTA
TACCCCCACCCTTCTGGGCTTCCTGGGCAAAAGGAGGGCTCAGAGAGGCC
GACGTACTGTAATTAGATGCGTCATTTTGTAGAGTACAGCAGTTCACCTC
CCAGAAGTTGAGATATGTCATGTCACCGGACATACGACGCATGCATGGCA
CATATGCGCGGAAGCTCTAAAGTATCTCGTGTTTCATTTTATCGCATCCT
GTCGGTGTTTTCTTTTGGTAGTGTATTTACCTTATGCCCCCGGTTTGGCA
CTTGTTTTCGGTGTTCAGTAGCTGTAATACAGCGACCGTTATGTCCGTCA
TAAGATTCATGTGTAGAAATTGACTCGAGTAGAGTATAGAACTTTCGTTC
CGAGATGAAGTCTGGTCAGGATCGTAGCAGCGCATTAGGCCGTTTATTAC
GGGCGTCAGAAGTTGGATTATCTGAAGTCATCCGATTCTGCTTCTGTTGG
CAAACTACTAGACAGCTCTTAGTTACTTGGATTTCATTGTAAACATCAAG
TTTGCAAGATAAGAATCGAATGCTTATGGTTAATGGTCTTATGCCCTTTC
TTTAACAACCTCTAAAGATCCACATCTCGAATATATATAGTCTGTGGCAT
CTGCTGTTGGGGTATGTTTTTTCAATAGAATTTGGCGTTATTTCATACGC
TGGAAATTGGCAGTAAAGGTGATCGTCTAGGTTGATTCGCTCTTCCTCTG
AAAGGTGAAGGGGTTGGCTCGTGAGCACCTATCTAGCTTTCGGCTGAAAC
AAACAGGTTAAGAATTCGGGCTTTTTGGAACATGTTGAGCCCTGCAGGGT
TCAATGAGTGCAGTAGATGCTGATACTGCTCATGCTGATGGTGCTGATAC
TGCTGGTGCTGATACTGCTGGTGCTGACACTGCTGGTGCTGATACTGCTG
ATGCTGATACTGCTGATGAGTTCCTTTCAGAAGAGTCTCCATCCTCTATC
CGAGTGTTTTTTTCAAAGCACATGGCATGCAACAGTTCAAGAGGATCGGA
GTTAGTTGTCGTGTCAATGCCGTTGACTTAGCCGTGGCCAAAAGCCATCC
ATTTCACGCCTACTGGTAATATTATTTTTGTTGTTGTTTTTTTATTCAAG
TATATCCTTGGTCCTTATTGATATAACTTTTTCAGTACAAACTGTAGGTA
ACTAAAGGTTGAGGTCAGGTGCATAACCTCAAACGGGTATTTCCCCCTCC
CCTCCCTGCCGGATTTTTGTCTTTTTTTTTTTTTCCGTTGGAAAAGGGTG
AAACCGGTGGTTTCACGTTTGTCTTCGTGGTGAACATTCAGTTGCCGCGG
ACGTTCACGAAGAAGAGCTGGGCAGCGTCGGTAGTGCTGTATTGGGGCAT
TCCTGAAGAGGCGTTGGCAGGCAAGGACAGTAGAATGTAATTCAAGGGTT
TGCTCTGGTAGGTTTACCAAGTATCGTGGAGTAGTGTTGAACCGCGCACA
AGAGTATCTTTGTTGAGGTCACTGGCTCTTTGAGAGCATCACGATGGAGT
AACGTTTTTGAAGGACAGCAACACGTGGCGGTATATTTCCTCAAGTCCTC
GTGACTACCGTAGTGTGCGCAAAATACCAGGCACGTTAAATTACCACGTT
GAAGTAAGTCTTGATTACCGTGAGAAACTACCGTGTGGTGATATACACGG
TAATCACCTGATCGGTGGAAGATATGACACCAATACATGTTGATCTCTCT
CGCCGAGCGCGATGTCACGGAGGTGCTTTGAGGGCGTTATATCACTGGAG
GTTACTCTCGTTACGTGCCTTTTTTCTAAATGGTGTTAATTTGGTAATTT
TACCGAGAAGGCCCGCCAAAGATATTGGCATTACCTAGGGGTCATGTTAC
CTCGTCTAACTACCGCGCCACACATGTGGGGGCGGATTTTTACTGCAGCA
GCAATTACCTGTTGTATACTCAGACCACTTGTTGTTTTTGGCGATCACTT
AGCGTAGGAAAAAGCATGAGTGAAAAACATATATTATGCATGTTATAGGC
GAGGCCCGTAGAACGAATAAAAATAATGAATAAATCGACCGTAGACTGTG
AGAAGATGAATGCATATACATCATGCATGCATGTTCCACCACGAGGTTTC
AAGGTACGCCGACTGTTCTTTAGAGGGTGTACGCGAACCGAATTAAACCA
GAAATGAACCACTCTGCAATACTGGTCGGTGAGCGGTGGATTCCTCACCG
GATCGCAAGGCAATGTGTTCGCCACAATTGATTCGTAAAGCTGTGTGTTC
CGTACGTGCATGTGTGTTTACAATTATCCACGGGTGACTGGCGTGATCCG
GCTCGTTGGCGTATGGTTATACGTGGGCGATTCGTTCGATCCGGGTCGTT
TGCATATATGCATGATTAGCCTGATTTGGATTGGTTTGCGTATGTTTTAT
GTTCGTCCACGGGTAACTCGTGCCGTCCGCATTCTTGGAGCATGCCCATG
CACGATCTGGACCGTGGTTGTTGACGGGTGACCCTTACGAGCCAACTTGC
GCCGATGATGATCGCTGCGGAAAGTGAAAGCCGTCAGTGTCTGTACAAGT
AGTATCAAACTTCAAACCGTTACAAAAAAAGTTGGACGGCAAGCCCTTGA
GGCGCCCGTCGTTCTCTGCCTAATCCTTACCGGAGAAAGAGGGACGAAAC
AGGGCCTATCTAATGAAATATTTGCGGGGGATGGGGAACTGCAGCTGTTC
AGGCAGTCGATCGCGTACATGCAGTATAGTATATACACACGCAGTATAGA
CAGGGAAACATTTAGTTGGCATGGTTCCGCACACAACTCGCGACCGTGCT
GGATATTTTGTGTTTCTTATTGTATTGCCCTCTTGCATTGTTTTTTTAGC
ATCTACTTTTACTTGTATATTGTATCCCATATTTTTAGTTTGTCACATTT
ACGTTTGAATGCAAAAAAGCCTCCTTGAATGGATGACCCTTCTTCAACCG
CAACTCCAAAACCAAAAGAATCGATCCAATACATAGAATGTCATGCTCCA
GCCTAGACGAAAAAAAAAGGCCGTGTAAAGTATTAAAATGTTGTTCGAAA
AGTACACCGTCCTCACGATAAAACGTTTTTTTATTCTCTCTAATGATTCA
TAGCATTTACGTTGACTTTTTACCAGAATCCATGTTACCAGAACATCGAA
CATGATTATGCAAATATTCAAAATGCTCGAATATGGAACGAATCAAAATA
GAGCACATGACAAAAAACACACGTGAATTTGGTTCGTATTCTGTCGGACG
TGTCTGTCGGACGTGCGGGCATAAACTTTCCAAAATACACACAGGGTCCC
TCTCCAGCACAGACGAAAAAGAACAAGACCATACATCGCCGTCTCCATCA
CCCCCTCTCCACACACCGCCACCACCAACATCACCACCGCCATCACAGCT
ACCACCACAGCACCCGCACTCGCCCGTGTCTACACAAATACTGGCGGACG
CCGCGCTTGCCAATGAAAGCATGATGATGATGCCGCCGTTCGAGCGGGAA
CTCCTGCAGCGTTACATCGACTTGCCGTTCAACCGACTCAGCGGCGCAAT
TTGTACCGGTTCTTCAGCCTCCGGCTTTGTAACCAATGACCCCACGGCCC
ATGGCACTGCATCAGGAAAGGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig957:593..15415+ >mRNA_H-paniculata_contig957.17281.1 ID=mRNA_H-paniculata_contig957.17281.1|Name=mRNA_H-paniculata_contig957.17281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig957:593..15415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAAGACCCAGGTGAATGCCATACCTTCAAGCTCCCAGATAAGGA
ACAAAACCAGTGGCTTCGCCGCGCCAACCGCGCAGCCGCGCACTACCACT
CCACCGCTAACACCACCGCAAACAGCAGCGTCAGCACCAGCACCTCCATG
TCGCTGTCCTCATCCAGCAGTCGCCGAACCACCCTAGCCAGCAACAACAG
CGGCTCTTCTTTGGGCAGTCATCTGAGCGAAGGGTTGGGGGAAGTCCCGG
TGTCGCCCCCCTCTGGGTTAGTGCCGGGGTCTGCGTCGGCGTCGGCGTCC
CCAAGTGCTCGGGAGGATGTTCCAAGACCCAGGTGAATGCCATACCTTCA
AGCTCCCAGATAAGGAACAAAACCAGTGGCTTCGCCGCGCCAACCGCGCA
GCCGCGCACTACCACTCCACCGCTAACACCACCGCAAACAGCAGCGTCAG
CACCAGCACCTCCATGTCGCTGTCCTCATCCAGCAGTCGCCGAACCACCC
TAGCCAGCAACAACAGCGGCTCTTCTTTGGGCAGTCATCTGAGCGAAGGG
TTGGGGGAAGTCCCGGTGTCGCCCCCCTCTGGGTTAGTGCCGGGGTCTGC
GTCGGCGTCGGCGTCCCCAAGTGCTCGGGAGGGTAAGCGCAGCCGTCTAG
TCTCACCGCGGCGTAGCAAGAGTGAGCGATCGAAGTCACCTAAGCGAAAG
GAAGGTATACAAGCCTCGCCTCGGCGGCGTGAAGCGCTGAAGAGGTTGGT
GTACATGGTCAGGCGAAAAGGCGGCAGCGGCGCCGTCGGCGGCAAGCGTA
GTCGGGGGGTTGGGGGGGGCGACGCGTCGTCCTCTTTGTCCATGTTCCGC
TTGCTTCACGTCGATATTTTTCAGGTAAGCGCAGCCGTCTAGTCTCACCG
CGGCGTAGCAAGAGTGAGCGATCGAAGTCACCTAAGCGAAAGGAAGGTAT
ACAAGCCTCGCCTCGGCGGCGTGAAGCGCTGAAGAGGTTGGTGTACATGG
TCAGGCGAAAAGGCGGCAGCGGCGCCGTCGGCGGCAAGCGTAGTCGGGGG
GTTGGGGGGGGCGACGCGTCGTCCTCTTTGTCCATGTTCCGCTTGCTTCA
CGTCGATATTTTTCAGGTGCCTCCGGGCAACCACCTTCACCGGATGGATC
ACATCGTCGGCATAGAGGGAGGGCGCGCGCAAGCTCGGGTACAGCAGCTC
ACCTCCCAAAAGGTGCCTCCGGGCAACCACCTTCACCGGATGGATCACAT
CGTCGGCATAGAGGGAGGGCGCGCGCAAGCTCGGGTACAGCAGCTCACCT
CCCAAAAGGGTGAAACCGGTGGTTTCACGTTTGTCTTCGTGGTGAACATT
CAGTTGCCGCGGACGTTCACGAAGAAGAGCTGGGCAGCGTCGGTAGTGCT
GTATTGGGGCATTCCTGAAGAGGCGTTGGCAGGGTGAAACCGGTGGTTTC
ACGTTTGTCTTCGTGGTGAACATTCAGTTGCCGCGGACGTTCACGAAGAA
GAGCTGGGCAGCGTCGGTAGTGCTGTATTGGGGCATTCCTGAAGAGGCGT
TGGCAGGGTCCCTCTCCAGCACAGACGAAAAAGAACAAGACCATACATCG
CCGTCTCCATCACCCCCTCTCCACACACCGCCACCACCAACATCACCACC
GCCATCACAGCTACCACCACAGCACCCGCACTCGCCCGTGTCTACACAAA
TACTGGCGGACGCCGCGCTTGCCAATGAAAGCATGATGATGATGCCGCCG
TTCGAGCGGGAACTCCTGCAGCGTTACATCGACTTGCCGTTCAACCGACT
CAGCGGCGCAATTTGTACCGGTTCTTCAGCCTCCGGCTTTGTAACCAATG
ACCCCACGGCCCATGGCACTGCATCAGGAAAGGCGGGTCCCTCTCCAGCA
CAGACGAAAAAGAACAAGACCATACATCGCCGTCTCCATCACCCCCTCTC
CACACACCGCCACCACCAACATCACCACCGCCATCACAGCTACCACCACA
GCACCCGCACTCGCCCGTGTCTACACAAATACTGGCGGACGCCGCGCTTG
CCAATGAAAGCATGATGATGATGCCGCCGTTCGAGCGGGAACTCCTGCAG
CGTTACATCGACTTGCCGTTCAACCGACTCAGCGGCGCAATTTGTACCGG
TTCTTCAGCCTCCGGCTTTGTAACCAATGACCCCACGGCCCATGGCACTG
CATCAGGAAAGGCG back to top
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