mRNA_H-paniculata_contig9566.17279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9566.17279.1
Unique NamemRNA_H-paniculata_contig9566.17279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Match: D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.220e-46
Identity = 78/133 (58.65%), Postives = 103/133 (77.44%), Query Frame = 3 
Query:   15 DERLMECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVASTFKLRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGLVCLYARVLRMCTSADLQRLRGPQTLWRSGFFPLN 413
             E LM C +YSR VRVLA+L A++++ GASAF   PLILM+WGPIAGY+AS F+LRA + FLF+Y LR+SWD+GW++SGG  W+VVWVFLFTD A+ GLV  +  +L  C++A+++ LR P T W S FFPL+
Sbjct:   88 SESLMACHRYSRVVRVLAILDAIIVLCGASAFT--PLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLS 218
[Close]
BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Match: A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.280e-8
Identity = 41/134 (30.60%), Postives = 75/134 (55.97%), Query Frame = 3 
Query:   12 HDERLMECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVAST-FKLRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGL---VCLYARVLRMCTSADLQRLRGPQTLWRSGF 401
            H+ +LME    ++ +R LAV   ++L+     F +  L+L+LWGP++G++A T +    TYA+  +Y LR+S  + ++  G       W F+F  A SL +   +  +A+VL   + A++++LR P  +W   +
Sbjct:   96 HEAKLMEASSLAKTIRWLAVFDGLILVINCGYFPML-LLLLLWGPLSGWMAGTRYSTAWTYAYCCYYLLRLSTYLSYVFEG-----YFW-FIFLFALSLYIARVIWRFAKVLDTLSPAEIEQLRNPTAVWSGQY 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQC7_ECTSI1.220e-4658.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KAV0_9PHAE2.280e-830.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9566contigH-paniculata_contig9566:1601..6189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005140.1
Exons4
Model size1257
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9566.17279.1prot_H-paniculata_contig9566.17279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9566 1627..5377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.2026534-UTR-H-paniculata_contig9566:1600..16261622931187.2026534-UTR-H-paniculata_contig9566:1600..1626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9566 1601..1626 +
1691481629.8892455-UTR-H-paniculata_contig9566:1600..16261691481629.8892455-UTR-H-paniculata_contig9566:1600..1626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9566 1601..1626 +
1622931187.360251-UTR-H-paniculata_contig9566:5377..55891622931187.360251-UTR-H-paniculata_contig9566:5377..5589Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9566 5378..5589 +
1691481629.926014-UTR-H-paniculata_contig9566:5377..55891691481629.926014-UTR-H-paniculata_contig9566:5377..5589Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9566 5378..5589 +
1622931187.3741987-UTR-H-paniculata_contig9566:5635..61891622931187.3741987-UTR-H-paniculata_contig9566:5635..6189Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9566 5636..6189 +
1691481629.9348042-UTR-H-paniculata_contig9566:5635..61891691481629.9348042-UTR-H-paniculata_contig9566:5635..6189Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9566 5636..6189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.2565663-CDS-H-paniculata_contig9566:1626..17121622931187.2565663-CDS-H-paniculata_contig9566:1626..1712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9566 1627..1712 +
1691481629.8982959-CDS-H-paniculata_contig9566:1626..17121691481629.8982959-CDS-H-paniculata_contig9566:1626..1712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9566 1627..1712 +
1622931187.2695668-CDS-H-paniculata_contig9566:3961..41111622931187.2695668-CDS-H-paniculata_contig9566:3961..4111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9566 3962..4111 +
1691481629.9062715-CDS-H-paniculata_contig9566:3961..41111691481629.9062715-CDS-H-paniculata_contig9566:3961..4111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9566 3962..4111 +
1622931187.3486226-CDS-H-paniculata_contig9566:5148..53771622931187.3486226-CDS-H-paniculata_contig9566:5148..5377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9566 5149..5377 +
1691481629.9141471-CDS-H-paniculata_contig9566:5148..53771691481629.9141471-CDS-H-paniculata_contig9566:5148..5377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9566 5149..5377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9566.17279.1

>prot_H-paniculata_contig9566.17279.1 ID=prot_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVASTFK
LRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGLVCLYA
RVLRMCTSADLQRLRGPQTLWRSGFFPLNTPLARGPLAQGRARSIPTSDD
AAVL*
back to top

mRNA from alignment at H-paniculata_contig9566:1601..6189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9566.17279.1 ID=mRNA_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4589bp|location=Sequence derived from alignment at H-paniculata_contig9566:1601..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACTTCAGCACGACGAGCGACTGATGGAATGTCTTCAGTATTCGCGG
GCAGTTCGGGTGTTGGCCGTGCTGAGCGCCGTAGTGTTAATCTACGGCGC
TTCTGCGTTCAAGTGAGAATTTTATTGTACGATGGCGGCGACGGCGGCGG
CGGGGGGGGGGGACTGGTCACGCAGGAGTATCTATTTTTCTGCTGATGTA
TCAATTGCGCCGCTCAGTAGGGGCAAGTATCTCTCTATTGCTGCCGTACA
GAAGCTTTGATCGTTTAACGATCGAAGGGGTGAGGTGAGGGGGGTAGTGG
TAGTAATAATGTGTTTGGGTCCTTCCTAGCAGGCGCATTTTTAGGCAGAA
AAACGGAAATTTGTCAATCTAAAATCACCTCTTCAAAGAAGAGCCAAAAT
TTTCCCAGCAGAACTACTATCAAACCATTGGTTTCATCGAATATTTCTAC
AAACATGGAAGAAGAAACGAGAACATTTCAGCTCTTCTTATTTGAGAGCC
CGAAAACCTAACAATTGACAAATTTCCGTTTTCCGCAAAAAAATGCGACT
GTTGGGAATGATCCTTAGACCTGAGTTTCCCCCCCAACCAAGGTACATCA
ATAAGCGCAAAACCCAATAGAGGCACCGCACCGGGGTACGAAGGCGTTTC
AAACGCGATTATCTCGACAATTACGCTCATTAGCTATAATAGCTGGTGAC
AACGAATAGTATGCCGTCGTAGAGATCCTGCGGAGATTTTTGTCGATTGA
CGGGTTCCCGGCGACCACGTAAGGTCTATTTCCGTCCTCGAGATAGGTAC
GTTTGACTGAAAAACGTTCGCACCCCGGTGCGAGATACCTCCCCGTTTTC
CTTATCCAGTACCATTGTAGGATAACACTTTATCCCTCGGACAAACATGA
ATACTTGGCGTAGTCTCCACAAAAATAAGATAGTATTCGCCTGATTTTCA
GAATGAGCTCATGTATTCTATGTGCCCTGGACGATTCACGACTGTTAATA
ATACTCGTATGTCGAATGGACAGAGGTGGGTACTTTATTCTATGTGTCCG
CTGATTCTGAAACTCAGGCGAATACTTGTTATTTTTCTTGGCGAATACGC
CAAGTATTCGTATTTGTCCGGGGGGTGTTATTACTTTGTGAAGCATTTAT
ATCAGATAATGAGGCCCGATGCGACTTAATACAGGGAGTGCTCGTTTAAG
CGGAATCCCTGTGGTGTGTCCTGTAGAGCACGCCTAACATTTAGCTCTTT
TTCCAGTGACTTTTTTACTATCTTTGATCGTTGAAAGAGTGTGGTGGTTG
ATCATTGATTGCTAATGTCCACTTGAAAGGTTGTGGTCTTATGGAACATA
CTTGTAGCGGTCTAGAAGGAACGTGGATGATTTTCAAAGTCCCCTCGGCA
CAACGATGATAGCATTACCCCCTCGGATTACCCCCTCGGATTTTCGGGCT
TAGTGCAAATGATCTGTGTTTCATGTGTGTCCTCCCAAAGTAGACCAGTA
CGAATACGTGGCGTATTCGCCACGAGAATTTCAAGAAGTATTCGCCTATG
CTTCAGAATGAACGGATACACGAAAAAATAAAGTTTCCAGCCCTGTCCAT
TCGATTTCTCAAGTATTTTTAGCAGTCGTGGATGATCCGCGGCACATAGC
ATACACGAGCTTATTATGAACAGTTGGATGAAATTTTGAATTTCCGTGGC
GAATATGCCAAGTATTCGTATTCGTCTGAGGGGAGGAAATATATATATAT
ATATATATTTATATAAATGGAACGGAAAAAAGGCCCCAAGCGAAATACGT
GATTCCTGCACAAACGATGATAGCGAGTTGCTCTGAGCGGAGAGCGGTTT
CGAGGGGAGGAGAAACTCTTGGCGTTCGCAGCTCACAACATAATTATTAT
ATTATAAAGAATGGTGGAGAAAAAATCAGGCTCGCTTGAATCGCTTCCCT
CAATAAATTTGATTTGAGGAATGGTGCTGATGTTGACTCCCCGTTGGATT
TTTCGCCTAGTCAATTCTAGATACTCGCTCGTATTTCGAGTGGGGCTACA
TGTAAGTAAGCCGAGAGGCTCACGCCAAATAGATGGGAATTTCTTGAGTG
TTATCGTGTACTGATTCCTCCTTTTTAAGAGAGGGAACCTCATTATCGCA
CAACTTCGCGAATTATTTATGCCATAATTCCCGTGGAACGTCAGAGTTCA
TCCTTTCTCTTATGGCTGACCGACTCTCTTCGTGTACACACGCACGTCAC
GCCCTGCGCATCATGTTATCGGCCTGTTAACAAGTAATGGTTATGATTCA
GCTAAAATTTAGGGTTAACTCGCTGCTTTCTTGTGCATGTATCTATGGTT
TGATGCCGCAGCCTCAGGCCGTTGATCCTAATGCTGTGGGGACCCATCGC
GGGTTACGTTGCTTCGACCTTCAAACTACGCGCTACCTATGCATTTCTCT
TTTTCTACAGCCTTAGAGTATCGTGGGACATGGGGTGGCTAATCAGCGGG
GGGGAAAACTGGTGAGGAGTAGAACGAAACATGTATCACGGGACGTCTTG
TTTTTCTCTGCGGTTGGTTTGGCGCATTGTAGATGTTCCACACGATGAGC
AAAGCGAGAAATTGGACTTGCGTGAGAGGGAATTGTATTCACGTTGAATG
TGAATATGAGCATGAATTGTCACACGGTTCGTTGTGAACTGTCATGATTC
AGCCTGAACGTTGCATCCGTGGAACACACACCAGGTGTAGGTTCTCCCAG
TGCAGTTGGGTTGGCCGTTCTGCCGACGCAATTGGGTCATATGTATGCCC
TGCCAACGCACAGTAGAGCATGATGGGTTGGAGTTAGGGTCAGGGTTTGG
TTTATTTGTAAATTGCATCAAGTGGACGTCCATGAATGTCCATGTGTTTT
GCCCCAAATTCAGTCTGAGAATGTAATTTGGATATTCCAGTTGATAAAGA
GGCACAACCAATGTTCTCGTGGATATCCATGTATTAAGCATTCGACGTTA
ATATTCGATACGAAGTTGGGCATTCAGAGACAGCATCAAAATTCGCATGG
GGCCTCCAAAGTTCGGTATGCACATTCAACATTCACATCATCACTGGATA
TGCAAATTAATGTTGAACGTTCAATGTAAATATTGATCATGTTCATATTG
ATCATGTTCATATTGAACATTTCATAGGGACGTAAAATTCGAGATGAGCG
TTCAACGTGCCACATGAAAGTTCGGTATTTCGTATACAGCCACCCCTTTC
TGGTAATATAGCTTTCATAACAAATGCTCATTACCGATTGGTATGTTGTC
GTAGTATTCCTGCCAACCGTACAAGATAATTGTGTGAATGATCGTTCGTA
TTATCCGTGCAATGTTTTGCGAGCGGCAAGGGGTGTTGCGCCCGCGAACA
TCCTGCTTAACAAAACGCTAAATGCCTTCAAAATACCACTTCGTTCTGTC
TTGCCAGACACGCATGAATATATGCCCCTGCCCCAATGCCGCCCGTTCCC
CCTCCTCCCCCGTCCTTGTTCTTGATTGCGTCCACACCATGACTGTAGGA
TCGTGGTATGGGTGTTCCTTTTCACGGATGCTGCTTCGTTGGGTCTCGTT
TGTTTGTACGCAAGGGTCCTGCGAATGTGCACGTCTGCCGATTTGCAGCG
ACTTCGGGGCCCCCAAACGTTATGGAGGTCAGGATTTTTCCCTTTAAACA
CGCCGCTGGCACGGGGACCGTTGGCACAGGGAAGGGCAAGGTCAATACCC
ACTTCCGACGACGCGGCTGTGCTGTAAAGAGTTTTTTTTCGTGTTCATAA
TGACCATGTTCGCGTGGTTTTCTTTTTGTGTTGCTGTCGGTGTTGTTGGA
GGTTGGTTGCTCTCCAGCCTTCCCTTGCATCGGGTTCTATAGCTGTTGTA
TGTGCAGTAAGTGTCCGTCGTGTGTGTTGGAATCATGATCCTGAGCCCGC
TGAGGTCGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTATGTATGTG
TGTGTGTGTGTATGTGCCACGTATGGATATTACAGGTCCTGTGAAATCAT
TTCGTGTCTTCTGTCTGCCTGTACTGTTTAGGTACAACTGATTGGTTGCT
TTCGTTGCATTTCTGGTTGTTGTACATAACACAGTTCAGTTCCTGGTCCG
TTTGACTACCTACAAGGTGTTGCTGTTCTCGGGCAGATTCTTTATCAGCG
CAATATTTGCAGTCCTGCATGTTTTTGTTGCCGTTCACCTTTTGGTGACT
GTTGCGAGTATTGCACAGGTCTGGGGCAGAGCACCCTCGTGCATAAATTC
ATTTGCGTTGCCTGTTCTTGGTACTGGTAGCTGCGTGGGGAAATAGAGTT
TGGCTGTCTCTTTCGCTGCCTATGGGTGTGTAAGACCGCTATGTACTGGT
TCTGGTGAGTATCTATCTGCGTCTCATCTACTGTATGCTGAAACAGAGGT
TAAGGTGGACCCGCAATTGCTGAAATATGTACTGATTTCAACAGGTAGAT
CGGGTATGCACGTTGTTCTCACGTGTATCTCAAGGATCAACTTTTGAAGT
CTGATTTATGAGGATATATGTTCGCTTAGCCGATTGCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9566:1601..6189+

>mRNA_H-paniculata_contig9566.17279.1 ID=mRNA_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig9566:1601..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATGTCTTCAGTATTCGCGGGCAGTTCGGGTGTTGGCCGTGCTGAG
CGCCGTAGTGTTAATCTACGGCGCTTCTGCGTTCAAATGGAATGTCTTCA
GTATTCGCGGGCAGTTCGGGTGTTGGCCGTGCTGAGCGCCGTAGTGTTAA
TCTACGGCGCTTCTGCGTTCAACCTCAGGCCGTTGATCCTAATGCTGTGG
GGACCCATCGCGGGTTACGTTGCTTCGACCTTCAAACTACGCGCTACCTA
TGCATTTCTCTTTTTCTACAGCCTTAGAGTATCGTGGGACATGGGGTGGC
TAATCAGCGGGGGGGAAAACTGCCTCAGGCCGTTGATCCTAATGCTGTGG
GGACCCATCGCGGGTTACGTTGCTTCGACCTTCAAACTACGCGCTACCTA
TGCATTTCTCTTTTTCTACAGCCTTAGAGTATCGTGGGACATGGGGTGGC
TAATCAGCGGGGGGGAAAACTGGATCGTGGTATGGGTGTTCCTTTTCACG
GATGCTGCTTCGTTGGGTCTCGTTTGTTTGTACGCAAGGGTCCTGCGAAT
GTGCACGTCTGCCGATTTGCAGCGACTTCGGGGCCCCCAAACGTTATGGA
GGTCAGGATTTTTCCCTTTAAACACGCCGCTGGCACGGGGACCGTTGGCA
CAGGGAAGGGCAAGGTCAATACCCACTTCCGACGACGCGGCTGTGCTGTA
AGATCGTGGTATGGGTGTTCCTTTTCACGGATGCTGCTTCGTTGGGTCTC
GTTTGTTTGTACGCAAGGGTCCTGCGAATGTGCACGTCTGCCGATTTGCA
GCGACTTCGGGGCCCCCAAACGTTATGGAGGTCAGGATTTTTCCCTTTAA
ACACGCCGCTGGCACGGGGACCGTTGGCACAGGGAAGGGCAAGGTCAATA
CCCACTTCCGACGACGCGGCTGTGCTGTAA
back to top