mRNA_H-paniculata_contig9561.17278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9561.17278.1
Unique NamemRNA_H-paniculata_contig9561.17278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA)

HSP 1 Score: 101 bits (252), Expect = 3.220e-25
Identity = 51/115 (44.35%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLRNLL 345
            +KQQ+VT S+TEAE+VAA     + ++LR + G +G+  + ST ++ DN SAI LS+    H R+KHI VR+H  R+  +EG++ L Y ++ DQ+AD++TK L +  F+KLR++L
Sbjct:   11 KKQQIVTLSTTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 106 bits (265), Expect = 1.960e-24
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQK 330
            +KQ     SSTEAEY+AA  A KE  +LR   G IG  C+ +T L  DN+SA+ +++    H RTKHI VR+H  RE ++ G + L+YV TGDQ+AD+LTKGL + +  K
Sbjct: 1018 KKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 100 bits (248), Expect = 1.740e-23
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLR 336
            R+QQ  + S+TEAEYVAA EA KE ++LR L   I      +  L+ DN+SAI L K    H RTKHI VR+H  +E  Q G + ++YV++ DQLADILTK L  V+F KLR
Sbjct:  136 RRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A0J7K966_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K966_LASNI)

HSP 1 Score: 95.9 bits (237), Expect = 4.190e-23
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   25 SSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLRN 339
            S+TEAEY+AA +A KE ++LR L  S+G    G TT+  DN+ AI L K    H RTKHI VR+H  RE  ++G + + YV + DQLADILTK LS+  F +LR+
Sbjct:    2 STTEAEYIAASDATKELIWLRHLLESMGVVTDGPTTMKVDNQGAIKLIKNPEYHKRTKHIEVRYHFIREKHEDGQIEIVYVPSSDQLADILTKALSKEPFIRLRD 106          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203)

HSP 1 Score: 99.0 bits (245), Expect = 5.550e-23
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLRNL 342
            +KQ+ V  S+ +AEY+A   A +E +++R L  +I   C   T +FEDN+S I+L+K    H R KHI +R+H TRE ++   + L Y Q+ D +AD+LTKGLS+V+F KL NL
Sbjct:  137 QKQRSVALSTVKAEYMALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A0J7KNG0_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KNG0_LASNI)

HSP 1 Score: 98.6 bits (244), Expect = 6.680e-23
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLRNLL 345
            ++Q++VT S+TEAEY+AA  A KE ++L+ L    G  C  ++ L  DN+SAI L++    H  TKHI +++H  RE ++ G L + Y+ +  QLADILTK LS+ +F KL N L
Sbjct:  133 QRQKMVTLSTTEAEYIAAATAAKEAIWLKRLLLDFGHDCTNASELHVDNQSAIRLARNPEFHKLTKHIDIKYHYIREKVESGELVISYIPSERQLADILTKALSKERFYKLCNYL 247          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A6G0WQK1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQK1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.840e-23
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLRNLL 345
            RKQ LV  S+TE E++AA EA K  V+LREL   + F     T L  DN+S I +   S SH RTKHI +R+H  ++ ++EG++ L+Y+ T +Q+ADILT+G+    F+KL+++L
Sbjct:  378 RKQSLVGHSTTEVEFIAAAEAAKSIVWLRELLEEMSFVVNSPTYLHVDNQSTIQVVHRSSSHDRTKHIRLRFHFIKDLVEEGMIKLRYINTKEQVADILTRGIVLAHFEKLQSML 492          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D)

HSP 1 Score: 97.1 bits (240), Expect = 1.260e-22
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLRNLL 345
            +KQ  V  S+TEAEYVA  +A +E ++LR L   +G      TT+ EDN+ AI +++    H RTKHI V +H  RE I    + + Y  + D +ADI+TKGLS+ QFQKLRNLL
Sbjct:   98 KKQSTVARSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQKLRNLL 212          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 96.7 bits (239), Expect = 1.420e-22
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVY----LRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLR 336
            +KQ+    S+TEAE+VA+ EAGKE V+    L+EL+G +         LF DN+SAI + +    H RTKHI VR+H  RE  ++G++  KYV T +QLADILTK L+  +FQ+LR
Sbjct:   86 KKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPT----PMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLR 197          
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT)

HSP 1 Score: 100 bits (250), Expect = 2.080e-22
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNRSAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILTKGLSRVQFQKLR 336
            +KQ++V  SS EAEYVAA  A  + ++L  L   +     G+TT+F DN+SAI L K    H R+KHI VR+H  R+ ++EG + +K++ TGDQLADI TK L R +FQ+LR
Sbjct: 1176 QKQKIVALSSCEAEYVAATTAACQAIWLSRLMRDLLKEEAGATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQQLR 1287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9561.17278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N5G5U8_9ROSA3.220e-2544.35Uncharacterized protein n=4 Tax=Pyrus ussuriensis ... [more]
A0A4Y9ZY34_9AGAM1.960e-2448.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1N3K4_PHOPY1.740e-2350.89Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A0J7K966_LASNI4.190e-2350.48Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
UPI001AE8F2035.550e-2344.74secreted RxLR effector protein 161-like n=1 Tax=Le... [more]
A0A0J7KNG0_LASNI6.680e-2344.35Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A6G0WQK1_9STRA7.840e-2345.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001F04687D1.260e-2246.96secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
UPI001E1BA65C1.420e-2247.41secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A7H4LDI7_WHEAT2.080e-2248.21Genome assembly, chromosome: II n=2 Tax=Triticinae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9561contigH-paniculata_contig9561:9142..9492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score103.2
Seed ortholog evalue8.3e-20
Seed eggNOG ortholog4513.MLOC_79484.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.155582-CDS-H-paniculata_contig9561:9141..94921622931187.155582-CDS-H-paniculata_contig9561:9141..9492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9561 9142..9492 -
1691481629.8785884-CDS-H-paniculata_contig9561:9141..94921691481629.8785884-CDS-H-paniculata_contig9561:9141..9492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9561 9142..9492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9561.17278.1prot_H-paniculata_contig9561.17278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9561 9142..9492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9561.17278.1

>prot_H-paniculata_contig9561.17278.1 ID=prot_H-paniculata_contig9561.17278.1|Name=mRNA_H-paniculata_contig9561.17278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
RKQQLVTWSSTEAEYVAAGEAGKETVYLRELQGSIGFGCRGSTTLFEDNR
SAINLSKGSGSHCRTKHIGVRWHGTREWIQEGILALKYVQTGDQLADILT
KGLSRVQFQKLRNLLM*
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mRNA from alignment at H-paniculata_contig9561:9142..9492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9561.17278.1 ID=mRNA_H-paniculata_contig9561.17278.1|Name=mRNA_H-paniculata_contig9561.17278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig9561:9142..9492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCAACAGTTAGTCACGTGGTCGAGTACAGAGGCAGAGTATGTTGC TGCAGGAGAAGCGGGAAAGGAGACGGTATACCTTAGGGAGTTACAAGGAT CGATAGGTTTCGGATGCAGAGGGAGCACGACATTATTTGAGGACAATAGA TCAGCTATTAATCTCAGTAAGGGATCTGGCTCACACTGCAGGACAAAGCA CATCGGAGTGCGCTGGCACGGAACTCGAGAGTGGATTCAGGAAGGAATAT TAGCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTAACG AAAGGACTAAGCAGAGTACAGTTTCAGAAACTGAGAAATTTACTCATGTG A
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Coding sequence (CDS) from alignment at H-paniculata_contig9561:9142..9492-

>mRNA_H-paniculata_contig9561.17278.1 ID=mRNA_H-paniculata_contig9561.17278.1|Name=mRNA_H-paniculata_contig9561.17278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig9561:9142..9492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCAACAGTTAGTCACGTGGTCGAGTACAGAGGCAGAGTATGTTGC
TGCAGGAGAAGCGGGAAAGGAGACGGTATACCTTAGGGAGTTACAAGGAT
CGATAGGTTTCGGATGCAGAGGGAGCACGACATTATTTGAGGACAATAGA
TCAGCTATTAATCTCAGTAAGGGATCTGGCTCACACTGCAGGACAAAGCA
CATCGGAGTGCGCTGGCACGGAACTCGAGAGTGGATTCAGGAAGGAATAT
TAGCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTAACG
AAAGGACTAAGCAGAGTACAGTTTCAGAAACTGAGAAATTTACTCATGTG
AAGGAAGCAACAGTTAGTCACGTGGTCGAGTACAGAGGCAGAGTATGTTG
CTGCAGGAGAAGCGGGAAAGGAGACGGTATACCTTAGGGAGTTACAAGGA
TCGATAGGTTTCGGATGCAGAGGGAGCACGACATTATTTGAGGACAATAG
ATCAGCTATTAATCTCAGTAAGGGATCTGGCTCACACTGCAGGACAAAGC
ACATCGGAGTGCGCTGGCACGGAACTCGAGAGTGGATTCAGGAAGGAATA
TTAGCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTAAC
GAAAGGACTAAGCAGAGTACAGTTTCAGAAACTGAGAAATTTACTCATGT
GA
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