mRNA_H-paniculata_contig9560.17277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9560.17277.1
Unique NamemRNA_H-paniculata_contig9560.17277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9560.17277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9560contigH-paniculata_contig9560:4084..7287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.0849223-CDS-H-paniculata_contig9560:4083..43901622931187.0849223-CDS-H-paniculata_contig9560:4083..4390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9560 4084..4390 +
1691481629.8583057-CDS-H-paniculata_contig9560:4083..43901691481629.8583057-CDS-H-paniculata_contig9560:4083..4390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9560 4084..4390 +
1622931187.1070395-CDS-H-paniculata_contig9560:7230..72861622931187.1070395-CDS-H-paniculata_contig9560:7230..7286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9560 7231..7286 +
1691481629.869959-CDS-H-paniculata_contig9560:7230..72861691481629.869959-CDS-H-paniculata_contig9560:7230..7286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9560 7231..7286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9560.17277.1prot_H-paniculata_contig9560.17277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9560 4084..7286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9560.17277.1

>prot_H-paniculata_contig9560.17277.1 ID=prot_H-paniculata_contig9560.17277.1|Name=mRNA_H-paniculata_contig9560.17277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
SRVAGGVVCNIVKLATVVFSMTTRLTSSFTGFTFRNSSADMSELRLLPMQ
MGMIRVCPAIRSRATAARLHQRFCSSMAYSKNNRPSRPSYSLAKTPQLIV
PSGGAGAAKGNVCRTASSSRG
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mRNA from alignment at H-paniculata_contig9560:4084..7287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9560.17277.1 ID=mRNA_H-paniculata_contig9560.17277.1|Name=mRNA_H-paniculata_contig9560.17277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3204bp|location=Sequence derived from alignment at H-paniculata_contig9560:4084..7287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGGGTAGCAGGTGGCGTTGTGTGCAACATTGTGAAGCTAGCGACTGT
CGTCTTCTCCATGACCACAAGATTAACGAGTTCATTCACTGGCTTTACTT
TCAGAAATTCAAGTGCAGACATGTCGGAATTGAGACTTCTTCCCATGCAA
ATGGGAATGATTCGAGTCTGCCCAGCGATAAGGTCGAGAGCGACAGCAGC
CAGGCTACACCAACGATTTTGCTCGAGCATGGCGTACTCCAAGAATAACC
GACCTAGTAGACCCAGCTACTCTTTGGCAAAGACTCCGCAGCTGATAGTT
CCTTCAGGTACAGTAGAAGCTTCGGTGAACTGTCCCTGGTCATGCACAAC
GCAGTGCAGCAGTCCTAGTATTATAGAAGCGGGCATGGCTTATATCCGAT
GGTATCAGATATGGGGTTATTTCGGAACAGAAATACTCTTAATAATGCCG
AGGTTGAATATTTAGCCGTTAGAGTAGAAAATGGAAATTTCAAGTAGATA
TAAATGGATGACTATTGAAAACATGACAATAACCATAAATCAAAATGGGG
GTGTAATCAGCATCTTCAAGCTCCTGGGTTACTTATCCACACTCTGAACA
AATTTGGGGAGAGGGTCATGGAGTTACAAAGCGAGTCAGCAGTAAAAGAT
AAATTACTGTGTCGGAAATATCACAACACGAGTAATCGTATAATAAAATG
GAGGTATGCTTCGAATCTTCAAGCTGCTGGACTACTTGGTTGTTATCCAC
AAAGTGAACAAATAGGGGGGGGGCGAGGGATCATTTTCAAAGAGGTAGGC
GTGCCTTGCAAATTGACCCTCAGATCAACCGTTTTGACCGCGAAGGGGTT
AACGTGGTTCTATGAGACCCTCTCGTTCGTCGAACCCGCAGCCAAAGTAC
TCTTAACTCACTTTCAGGGATTTGAGGAGTGTATTCGATTTCTCGGGTGT
GGACTTTTGGTTTGTTGTTTAGAGCCGCAATTGGTATCTTTTAGGGGTTC
GTGTGTGATGCGAAAGCCAATCCCTGAGCCAGTCTTCATTCCGCATGATG
TACTTGTAGTATCTTCATGAAGTGGCCATAGCATACTCCTGAAACTTTTC
GCCGGATCCATCTGTCCGGCAAATAGTAGACAAGCCTCCGGCCACAGCGG
CTACCAGCAAAAAACATTGCCCACATATTTCAAACTATCACTCATCGGGA
ATTTCGCTCTTCCCGAGTTGTTGAGAAATCTGATTGTGGAAATGTTTACC
CCTAGGCGATATTTGACCGTTTGTCTATATTTTACGCTTTTGATCACGTA
CCCTACACATCATGGCACTTCAGATATACGGTGCAATTGCAACCTGCCAA
TTTACGGATGTGGGGGGGGAAGGGAAAGATGCCAAGTACCTCATTATTTT
GTTCAGGAGTGGTTGGAGGTGTGGCAGCGTCCCCTTACAGTACTGTAAAT
GCAGACAGCACGAATCGACAAATGATAGGGTTGGTAATACGCAATATTTC
GCAGGAGGAGCGAGAGTAAATTACTACCTGAACTGTAAAAAACATGGCAA
TAACCGTATAACAAAAGGTGGGGTATAACTCTGAATCTAAATTAATAACT
GTATTGTACCCTTGTTGACGCTATCGAGCTGACTTTAATTTGCAGTTGTA
AAGCTACGTTTATCAGCAAGAATAAATCAATTTGAAGGGGGTGCAATAAC
ATGACGTCGAATACATCGGCACTGGGATCGGTGGTTTCATCTCTGGATAG
CAACGGGGAAAATAAATTAGCCTCAATTTCCTCATATCGATAAATGTATG
TAATGCGATGCAATCACGATTGTCAACCTTGCATACCGATATTTGACGGT
GAAAAACACTCGCGGAACAGCAAATTTTTCTGGCCTTTCGCCCTATTAAT
AGCCTATCTTTTTGTATTACGGGACGTCTTCGAGATTACCATGAATTATG
GAGGGAAGAAATGGATATCGGAGAGTAACGGTGGAGACAGTGTCTTGAGA
GCTTCACGAGGAGTCGAGGGGTCCCCTAGGCAAAATTAACGAATACCGTG
GAGTATTGTTGAACGCACACATCAAGGGTACAGTTGAGAATGTTGTATTC
CGAAAGTACCACGACAAAGAGACATTCCGCGGGGAAATGATCGCGGTGAT
ATATTTTCTTAATTCCAAGTTACTACTGTGTTATTCGCGGATTACCGTGC
ACTGTAATCTACCGAGGTACAGTGAATCTTGATCTCCATGAAAAATTACC
GTGGCCATTACACGGTAATCACGCAGTCTTTCGAAAAAATAGCACCGATA
CATATTTCCCACCAGGCATGATTTTACGAATGTGCTTTCAAGCGCTGTTT
CACTGGAGGTTAGTTACTCTTGCTAAACCCTGTTTTCTAAAATTAAGATA
GTCGAAAAATTTATCAAGGGGGCCCCTGGTATTTCCGAGTCCGATATGCA
TTTGAAAATATATAATCAGGTATTTGCTATCGCTTGGGCTTCGCTTACTC
CACGATGTAGAGAAAATAGGACAAAGAAGGGCCATCCTTTCTCAGGGGGT
GTCATACATACCTTGTAAAATAGTGGAATGAACGTCGCGAAACATGTCCA
GTACGATATAATACAGCTCAATTCATCCCAGCGTATGCAGTATCCCGTGT
GTGTGGGATGTTTTTACCCGTATCCGTCGCTGGCCTAGTGCGGAACACAG
CGTGTTTATGCTGCTGTACCCATCGCGTGGAAATCATCCGCGCGTTGATT
GGGACTGTGTCTTGCTTTTTCTGTGTCAGCGTAAGCGGGGCTGCGTTGAA
ATTGAAATTGTGTGTATCATGAACAACATCATGTATCGGACGGGGGGGGG
AATTGCGACCATGTTTCCTGTGCTTTAACCATATGTGTGTATGCTGCTGG
TCAGTGAAAGGAGTACACAACGGTGCTTTTGCTTCACATCGTTTGTGTAG
CTTCTACTTTGGAACAAACGGGAGACAGCCAAGTTTATTATTCGAATTAA
TCGTGCTACAAAACATTCCATTTGAAAAGGTTAAATTAGTATAAAAGTTA
CCATGACGAAAAGAAACTGGACCCAACTGCTCAGTTATCGCGCCGGGGCT
GAGTAGTGCTAGTATTATGTTGTTTTTTCTGTGGCCCTATCCTCCAGGGG
GCGCGGGCGCAGCAAAGGGCAACGTTTGCCGAACTGCAAGTAGCTCGAGA
GGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9560:4084..7287+

>mRNA_H-paniculata_contig9560.17277.1 ID=mRNA_H-paniculata_contig9560.17277.1|Name=mRNA_H-paniculata_contig9560.17277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig9560:4084..7287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGGGTAGCAGGTGGCGTTGTGTGCAACATTGTGAAGCTAGCGACTGT
CGTCTTCTCCATGACCACAAGATTAACGAGTTCATTCACTGGCTTTACTT
TCAGAAATTCAAGTGCAGACATGTCGGAATTGAGACTTCTTCCCATGCAA
ATGGGAATGATTCGAGTCTGCCCAGCGATAAGGTCGAGAGCGACAGCAGC
CAGGCTACACCAACGATTTTGCTCGAGCATGGCGTACTCCAAGAATAACC
GACCTAGTAGACCCAGCTACTCTTTGGCAAAGACTCCGCAGCTGATAGTT
CCTTCAGAGTAGGGTAGCAGGTGGCGTTGTGTGCAACATTGTGAAGCTAG
CGACTGTCGTCTTCTCCATGACCACAAGATTAACGAGTTCATTCACTGGC
TTTACTTTCAGAAATTCAAGTGCAGACATGTCGGAATTGAGACTTCTTCC
CATGCAAATGGGAATGATTCGAGTCTGCCCAGCGATAAGGTCGAGAGCGA
CAGCAGCCAGGCTACACCAACGATTTTGCTCGAGCATGGCGTACTCCAAG
AATAACCGACCTAGTAGACCCAGCTACTCTTTGGCAAAGACTCCGCAGCT
GATAGTTCCTTCAGGGGGCGCGGGCGCAGCAAAGGGCAACGTTTGCCGAA
CTGCAAGTAGCTCGAGAGGGGGGGCGCGGGCGCAGCAAAGGGCAACGTTT
GCCGAACTGCAAGTAGCTCGAGAGGG
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