mRNA_H-paniculata_contig9555.17274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9555.17274.1
Unique NamemRNA_H-paniculata_contig9555.17274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9555.17274.1 vs. uniprot
Match: A0A6H5LAT3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.500e-37
Identity = 136/373 (36.46%), Postives = 178/373 (47.72%), Query Frame = 1 
Query:    1 QRVFGPVYAGEYLGTTVAVSVLNEQIDVGPDDKNAA----AAAARLRLAATEEIRVLAARLSPNARLARTHGTEVVSVLVPLNVKNAPTISLLGDGGHAGEKAGAAAATVGDDVGVASPPTAMARHCRPVLVVVGELVEGGSLRERV----------------------------------------VRARQSSEATAVGGALRRRQILADVAEGLSCLHGKGLEHGALSSENVLLDAVGRAKLSLYGLTKTRKAVATLAAGRAPAAANQDA---NGXXXXXXAVMRPTPWTPPEALCASSV---------------------------SAFDESDLKPESEQESDEKSTENPREKAVGAADAYAFGMVAWEV 897
            Q  FGP YA EYLG  V+ +VL+    +   D+ AA    A+A  LR +AT E+R L++ + P+ARLART+G E +S    L + +  +    G GG  GE+ G AA                       LV+VGE+VEGGSLR R+                                         RA  S EA AV   LRRR++LAD+AEGL+CLH +G+ HGALSSENVLLDA GRAKLSL+GL  TRKAVA+     A A+   D     G         + + WT PE   AS+                            SA D   L  E+   ++ ++ +  ++KA   ADAYAFGM+AWEV
Sbjct:  651 QGAFGPTYAAEYLGIPVSATVLS----INTSDRMAAVWSTASAKLLRRSATSELRALSSLVPPHARLARTYGNESISTQGSLRIVHHKSG---GVGGEQGEEDGPAA-----------------------LVLVGEMVEGGSLRNRIKACAAPAAAAGEETAEVLEEDEEAGVEENLSAKGGEGEEEARAASSGEAPAVQ-LLRRRKVLADIAEGLACLHERGVSHGALSSENVLLDAEGRAKLSLFGLPDTRKAVASFMVSSATASEEWDVLPMKGAAVPRVIDPQGSVWTAPETWVASAARQKAXXXXXXXXXXXXXXXXXXXXXRASAVD---LAAETRVAAEAEALDG-KKKAAFMADAYAFGMIAWEV 988
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BLAST of mRNA_H-paniculata_contig9555.17274.1 vs. uniprot
Match: D7FXM4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM4_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 6.010e-35
Identity = 129/370 (34.86%), Postives = 176/370 (47.57%), Query Frame = 1 
Query:    1 QRVFGPVYAGEYLGTTVAVSVLNEQIDVGPDDKNAA----AAAARLRLAATEEIRVLAARLSPNARLARTHGTEVVSVLVPLNVKNAPTISLLGDGGHAGEKAGAAAATVGDDVGVASPPTAMARHCRPVLVVVGELVEGGSLRERV----------------------------------------VRARQSSEATAVGGALRRRQILADVAEGLSCLHGKGLEHGALSSENVLLDAVGRAKLSLYGLTKTRKAVATLAAGRAPAAANQDA---NGXXXXXXAVMRPTPWTPPEALCASSVS------------------------AFDESDLKPESEQESDEKSTENPREKAVGAADAYAFGMVAWEV 897
            Q  FGP YA EYLG  V+ +VL+    +   D+ AA    A+A  LR +AT E+R L++ +  +ARLART+G E +S    L + +               K+       G++ G A+            LV+VGE+VEGGSLR+R+                                         RA  S EA A    LRRR++LAD+AEGL+CLH +G+ HGALSSENVLLDA GRAKLSL+GLT TRKAVA+     A  +   DA    G         + + WT PE   AS+                          +   +DL  E+   ++ ++ +  ++KA   ADAYAFGM+AWEV
Sbjct:  688 QGTFGPTYAAEYLGIPVSATVLS----INTSDRMAAVWSTASAKLLRRSATSELRALSSLVPLHARLARTYGNESISTQGSLRIVH--------------HKSXXXXXXXGEEDGPAA------------LVLVGEMVEGGSLRDRIKACGAAAAAAGEERADVLEEGGEAGVEENLSAKGGEGEEEARAASSGEAPAAQ-LLRRRKVLADIAEGLACLHERGVSHGALSSENVLLDAEGRAKLSLFGLTDTRKAVASFMVSSATVSEESDALPMKGAAVPRVLDPQGSVWTAPETWVASAARQKAAXXXXXXXXXXXXXXXXXXXXSASVADLAAETLVAAEAEALDG-KKKAAFMADAYAFGMIAWEV 1025
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BLAST of mRNA_H-paniculata_contig9555.17274.1 vs. uniprot
Match: R7RZZ1_PUNST (Kinase-like protein (Fragment) n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=R7RZZ1_PUNST)

HSP 1 Score: 55.1 bits (131), Expect = 3.720e-5
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  490 ILADVAEGLSCLHGKGLEHGALSSENVLLDAVGRAKLSLYGLTKTRKAVATLAA 651
            ++ D+A GL+ +H  GL HG L S NVL+D +GRA+LS +GL  T    A+LAA
Sbjct:   55 LITDIARGLNYMHASGLVHGDLKSRNVLVDKIGRARLSDFGLATTILGTASLAA 108
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BLAST of mRNA_H-paniculata_contig9555.17274.1 vs. uniprot
Match: UPI0019B9D022 (Protein kinase n=1 Tax=Thermoanaerobaculia bacterium TaxID=2651171 RepID=UPI0019B9D022)

HSP 1 Score: 55.8 bits (133), Expect = 5.310e-5
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:  376 VLVVVGELVEGGSLRERVVRARQSSEATAVGGALRRRQILADVAEGLSCLHGKGLEHGALSSENVLLDAVGRAKLSLYGLTK 621
            V  VV ELVEG +LRER+ R     E  A        ++ A VAEGLS  H +GL H  +  EN+++   GRAK+  +GL K
Sbjct:   83 VTYVVTELVEGETLRERLARGPLRMEEAA--------ELAAQVAEGLSAAHARGLIHRDVKPENIVIAPEGRAKILDFGLVK 156
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BLAST of mRNA_H-paniculata_contig9555.17274.1 vs. uniprot
Match: UPI0004418585 (kinase-like protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004418585)

HSP 1 Score: 53.9 bits (128), Expect = 8.610e-5
Identity = 46/140 (32.86%), Postives = 59/140 (42.14%), Query Frame = 1 
Query:  487 QILADVAEGLSCLHGKGLEHGALSSENVLLDAVGRAKLSLYGLTKTRKAVATLAAGRAPAAANQDANGXXXXXXAVMRPTPWTPPEALCASSVSAFDESDLKPESEQESDEKSTENPREKAVGAADAYAFGMVAWEVRLE 906
            +++ DVA GL  +H  GL HG L S NVL+D++G A+LS +GL  T    ATLA       A   AN       A         PE            SD+             E   +     +D YAFGM AWE+  E
Sbjct:   25 ELITDVARGLEYMHASGLVHGDLKSRNVLVDSLGYARLSDFGLATTVLGTATLAP-----TAGSSANWGSFRYMA---------PEL-----------SDI-------------EEKGKTLTWKSDVYAFGMTAWEIFAE 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9555.17274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LAT3_9PHAE2.500e-3736.46Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FXM4_ECTSI6.010e-3534.86Protein kinase domain-containing protein n=1 Tax=E... [more]
R7RZZ1_PUNST3.720e-550.00Kinase-like protein (Fragment) n=1 Tax=Punctularia... [more]
UPI0019B9D0225.310e-542.68Protein kinase n=1 Tax=Thermoanaerobaculia bacteri... [more]
UPI00044185858.610e-532.86kinase-like protein n=1 Tax=Punctularia strigosozo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9555contigH-paniculata_contig9555:6878..8555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D7FXM4
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionSerine-threonine/tyrosine-protein kinase catalytic domain
Ec32 orthologEc-28_002290.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons2
Model size921
Cds size921
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.216413-CDS-H-paniculata_contig9555:6877..72011622931186.216413-CDS-H-paniculata_contig9555:6877..7201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9555 6878..7201 -
1691481629.453029-CDS-H-paniculata_contig9555:6877..72011691481629.453029-CDS-H-paniculata_contig9555:6877..7201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9555 6878..7201 -
1622931186.2298846-CDS-H-paniculata_contig9555:7958..85551622931186.2298846-CDS-H-paniculata_contig9555:7958..8555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9555 7959..8555 -
1691481629.4655623-CDS-H-paniculata_contig9555:7958..85551691481629.4655623-CDS-H-paniculata_contig9555:7958..8555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9555 7959..8555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9555.17274.1prot_H-paniculata_contig9555.17274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9555 6878..8555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9555.17274.1

>prot_H-paniculata_contig9555.17274.1 ID=prot_H-paniculata_contig9555.17274.1|Name=mRNA_H-paniculata_contig9555.17274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
QRVFGPVYAGEYLGTTVAVSVLNEQIDVGPDDKNAAAAAARLRLAATEEI
RVLAARLSPNARLARTHGTEVVSVLVPLNVKNAPTISLLGDGGHAGEKAG
AAAATVGDDVGVASPPTAMARHCRPVLVVVGELVEGGSLRERVVRARQSS
EATAVGGALRRRQILADVAEGLSCLHGKGLEHGALSSENVLLDAVGRAKL
SLYGLTKTRKAVATLAAGRAPAAANQDANGGGGAAAAVMRPTPWTPPEAL
CASSVSAFDESDLKPESEQESDEKSTENPREKAVGAADAYAFGMVAWEVR
LEGGSC*
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mRNA from alignment at H-paniculata_contig9555:6878..8555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9555.17274.1 ID=mRNA_H-paniculata_contig9555.17274.1|Name=mRNA_H-paniculata_contig9555.17274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1678bp|location=Sequence derived from alignment at H-paniculata_contig9555:6878..8555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGAGTCTTTGGCCCCGTATATGCAGGCGAGTACCTGGGAACGACTGT
GGCCGTGAGCGTCCTCAACGAACAAATCGATGTCGGTCCGGACGACAAGA
ACGCTGCGGCTGCGGCCGCCCGGCTTCGATTAGCCGCGACGGAGGAAATT
CGCGTTCTGGCCGCCCGCCTTTCGCCTAACGCGAGGCTCGCGCGCACGCA
CGGCACCGAGGTGGTGAGCGTTTTAGTGCCGCTCAACGTAAAGAACGCCC
CGACGATCAGCCTCTTGGGTGACGGCGGCCATGCTGGCGAAAAGGCGGGG
GCTGCTGCTGCTACTGTGGGCGATGATGTTGGGGTAGCGTCGCCACCGAC
GGCTATGGCGAGACATTGCCGTCCGGTACTTGTCGTCGTGGGCGAGCTGG
TGGAAGGAGGATCGCTTCGAGAGCGCGTCGTGAGGGCTCGGCAGTCGAGC
GAGGCGACGGCGGTGGGAGGGGCCTTGCGGCGGAGGCAGATACTCGCAGA
TGTCGCGGAGGGGCTGAGTTGCCTCCACGGGAAAGGATTGGAACACGGAG
CATTGTCGAGCGAGAACGTGTTGCTAGATGCCGTTGGGAGAGCGAAGGTG
CGCGCGCGAGTCGCGGCGGCGATGGCTGCCGAACGGGAAAATACCTTTCT
AATAAAAGGAAGTGATGTGTTTTTTAATATTTTTGGTTTGCGTGTCGCTG
GTGTACTGCGCTGAACACGGTTATCGTTAGGGCCTCTTATATGAGGTACA
CGTGACAACCGGGAGGGCTACAGGATTCGGCACGCTTTAGTCGACACGAA
AGTTGCCGGGCATAACATGTAACTGGCTCTTGTACCCAAAAGGGCGGTCT
AATAGCACATGCAACTTTCTATAATTCACGCAAAAGCGCTCCTATTGTTT
TCTCGTACGACATGTGGGCGGACTGATGCATGCATACCGCATTTCAAGTG
TTTCTATTTGCCCCCGAACTATTGCGTGCTTAGCGAATGAGTTATCGCTA
TTGTCTAGTTCGCACAAAACAAACCTACCCCATACGCAATAGACGCATAC
CCCCCTCTAACCTGTAATTCTCTTGCTTCGTGCCCCGTCCCCTCGTCCGC
TCCCTTGCTGCACGCTCATACCTGTCTGCTTATGATTATATTCCTGGGGA
CATCGCCCTTCTCGGTGCGTTGGAACTACCGGCTGCGCTCCTCCTGAACC
AATCACATCGTGTGCCATACGGTCGGTTGGTCTTTGCATTTTGACAAAAA
AATACTGCTGGCGATCGGCGCTTGTCTTTTTGCATTCTCGACAACGGATT
CGCTGCCATTCCTGGCTTGGTATTTCTTCCTCTCCACGCCCTCTAAACTT
CCAGCTTTCCTTGTACGGTCTCACCAAGACTCGAAAAGCTGTTGCTACGC
TGGCTGCTGGGAGGGCGCCGGCTGCGGCCAACCAAGACGCCAACGGTGGC
GGAGGCGCCGCCGCCGCTGTCATGCGTCCGACGCCATGGACTCCACCCGA
GGCTCTCTGCGCGTCATCGGTTTCTGCTTTTGACGAGAGTGACTTGAAGC
CGGAATCTGAGCAAGAGTCGGACGAGAAGAGTACCGAAAATCCTCGGGAG
AAGGCGGTCGGAGCGGCGGATGCGTATGCGTTCGGGATGGTGGCATGGGA
GGTGCGTTTGGAAGGCGGAAGTTGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9555:6878..8555-

>mRNA_H-paniculata_contig9555.17274.1 ID=mRNA_H-paniculata_contig9555.17274.1|Name=mRNA_H-paniculata_contig9555.17274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig9555:6878..8555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGAGTCTTTGGCCCCGTATATGCAGGCGAGTACCTGGGAACGACTGT
GGCCGTGAGCGTCCTCAACGAACAAATCGATGTCGGTCCGGACGACAAGA
ACGCTGCGGCTGCGGCCGCCCGGCTTCGATTAGCCGCGACGGAGGAAATT
CGCGTTCTGGCCGCCCGCCTTTCGCCTAACGCGAGGCTCGCGCGCACGCA
CGGCACCGAGGTGGTGAGCGTTTTAGTGCCGCTCAACGTAAAGAACGCCC
CGACGATCAGCCTCTTGGGTGACGGCGGCCATGCTGGCGAAAAGGCGGGG
GCTGCTGCTGCTACTGTGGGCGATGATGTTGGGGTAGCGTCGCCACCGAC
GGCTATGGCGAGACATTGCCGTCCGGTACTTGTCGTCGTGGGCGAGCTGG
TGGAAGGAGGATCGCTTCGAGAGCGCGTCGTGAGGGCTCGGCAGTCGAGC
GAGGCGACGGCGGTGGGAGGGGCCTTGCGGCGGAGGCAGATACTCGCAGA
TGTCGCGGAGGGGCTGAGTTGCCTCCACGGGAAAGGATTGGAACACGGAG
CATTGTCGAGCGAGAACGTGTTGCTAGATGCCGTTGGGAGAGCGAAGCAG
AGAGTCTTTGGCCCCGTATATGCAGGCGAGTACCTGGGAACGACTGTGGC
CGTGAGCGTCCTCAACGAACAAATCGATGTCGGTCCGGACGACAAGAACG
CTGCGGCTGCGGCCGCCCGGCTTCGATTAGCCGCGACGGAGGAAATTCGC
GTTCTGGCCGCCCGCCTTTCGCCTAACGCGAGGCTCGCGCGCACGCACGG
CACCGAGGTGGTGAGCGTTTTAGTGCCGCTCAACGTAAAGAACGCCCCGA
CGATCAGCCTCTTGGGTGACGGCGGCCATGCTGGCGAAAAGGCGGGGGCT
GCTGCTGCTACTGTGGGCGATGATGTTGGGGTAGCGTCGCCACCGACGGC
TATGGCGAGACATTGCCGTCCGGTACTTGTCGTCGTGGGCGAGCTGGTGG
AAGGAGGATCGCTTCGAGAGCGCGTCGTGAGGGCTCGGCAGTCGAGCGAG
GCGACGGCGGTGGGAGGGGCCTTGCGGCGGAGGCAGATACTCGCAGATGT
CGCGGAGGGGCTGAGTTGCCTCCACGGGAAAGGATTGGAACACGGAGCAT
TGTCGAGCGAGAACGTGTTGCTAGATGCCGTTGGGAGAGCGAAGCTTTCC
TTGTACGGTCTCACCAAGACTCGAAAAGCTGTTGCTACGCTGGCTGCTGG
GAGGGCGCCGGCTGCGGCCAACCAAGACGCCAACGGTGGCGGAGGCGCCG
CCGCCGCTGTCATGCGTCCGACGCCATGGACTCCACCCGAGGCTCTCTGC
GCGTCATCGGTTTCTGCTTTTGACGAGAGTGACTTGAAGCCGGAATCTGA
GCAAGAGTCGGACGAGAAGAGTACCGAAAATCCTCGGGAGAAGGCGGTCG
GAGCGGCGGATGCGTATGCGTTCGGGATGGTGGCATGGGAGGTGCGTTTG
GAAGGCGGAAGTTGCTAACTTTCCTTGTACGGTCTCACCAAGACTCGAAA
AGCTGTTGCTACGCTGGCTGCTGGGAGGGCGCCGGCTGCGGCCAACCAAG
ACGCCAACGGTGGCGGAGGCGCCGCCGCCGCTGTCATGCGTCCGACGCCA
TGGACTCCACCCGAGGCTCTCTGCGCGTCATCGGTTTCTGCTTTTGACGA
GAGTGACTTGAAGCCGGAATCTGAGCAAGAGTCGGACGAGAAGAGTACCG
AAAATCCTCGGGAGAAGGCGGTCGGAGCGGCGGATGCGTATGCGTTCGGG
ATGGTGGCATGGGAGGTGCGTTTGGAAGGCGGAAGTTGCTAA
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