mRNA_H-paniculata_contig12744.1727.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12744.1727.1
Unique NamemRNA_H-paniculata_contig12744.1727.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12744.1727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12744contigH-paniculata_contig12744:975..3995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size611
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.8725102-CDS-H-paniculata_contig12744:975..10131622928996.8725102-CDS-H-paniculata_contig12744:975..1013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12744 976..1013 -
1691480695.5202956-CDS-H-paniculata_contig12744:975..10131691480695.5202956-CDS-H-paniculata_contig12744:975..1013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12744 976..1013 -
1622928996.889462-CDS-H-paniculata_contig12744:3424..39951622928996.889462-CDS-H-paniculata_contig12744:3424..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12744 3425..3995 -
1691480695.529835-CDS-H-paniculata_contig12744:3424..39951691480695.529835-CDS-H-paniculata_contig12744:3424..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12744 3425..3995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12744.1727.1prot_H-paniculata_contig12744.1727.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12744 976..3995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12744.1727.1

>prot_H-paniculata_contig12744.1727.1 ID=prot_H-paniculata_contig12744.1727.1|Name=mRNA_H-paniculata_contig12744.1727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
LPPPSRVPPSLPGTWYPPSILGTNAPSCPPPLSRPPAMNQSIHQCIVCAM
MTRRSFEQQPVYGGTGGVGGGGGGVHGSTSHGPLAAPIPPLSSSIDNNRN
SSASAHVSNFSSPSQSSPYSVPAPHGIPPGALTGAHYGNNNTRVSGEAVY
YNDPSVASTYGGLPAGATAAAPYGRPAGGMAPGFAGERGGGANYNPSAMS
NAY
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mRNA from alignment at H-paniculata_contig12744:975..3995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12744.1727.1 ID=mRNA_H-paniculata_contig12744.1727.1|Name=mRNA_H-paniculata_contig12744.1727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3021bp|location=Sequence derived from alignment at H-paniculata_contig12744:975..3995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCTCCCCCGTCGCGCGTACCCCCCTCGCTTCCTGGAACGTGGTACCC
TCCCTCGATTCTCGGCACCAATGCACCTTCTTGCCCGCCACCACTCTCCC
GTCCCCCCGCAATGAATCAATCAATCCATCAATGCATCGTGTGTGCGATG
ATGACTCGGCGGAGTTTCGAACAGCAGCCTGTATACGGTGGAACAGGTGG
TGTTGGCGGCGGTGGTGGTGGTGTTCACGGGTCCACTTCCCATGGCCCAC
TCGCTGCACCCATACCACCATTGTCATCATCCATCGACAACAACAGGAAT
AGCAGCGCCTCCGCTCACGTTTCAAATTTCTCTTCTCCTTCTCAGTCTTC
TCCATATTCTGTTCCCGCGCCCCACGGCATTCCCCCCGGCGCCCTTACCG
GGGCCCACTACGGCAATAACAACACCCGAGTTAGTGGAGAGGCGGTTTAC
TACAACGATCCCTCGGTTGCCTCGACATATGGGGGGCTGCCAGCGGGGGC
TACGGCGGCTGCGCCCTACGGGCGCCCTGCCGGCGGGATGGCCCCCGGGT
TTGCCGGGGAAAGGGGGGGAGGTAAGGTCACGGGGGAGGGTCGTTTCTTG
TGTTTCTTGTGTGTTGGGTTCTTTCGGTTCCCAGCTCAATAGGTGGTCAG
GACAGGTTGATGGTGCGTTATGCGTCGTAAATTGGTGGCGTGACGGGGGA
GGGATGGGGGGGGGGGGGGGGGGGGAGATTTGTAATTGTGTGCGTTTTTT
CTGTTGGGCACATTGTAAATATTGCACAACTCGGATGATGGAGCGGTAAG
GAACCAGCTATGCCTTCATCCCCAAATCAAATCAAATTTCAGAACTAGCT
GCATTCATGACGTTTATTGCAGTGCGGATGAAGGTCAATGAAGGTAGAAA
AGTCATTTGACCGCTCCTTCATTGAAGATGTAAAAGATTAACACATGGCC
TCGCTGTTCCACGTGATGTGAAAATTAGGTACTGTCTTACTGTACTCTTA
TGCTACAACCTAAAAGCAAATACACATGCATGCTGCAATTATATGCAGGT
CTCGCTTTATTTAGTGATTGAAACTTGAGATACGAAGGAGCGGTCTAACG
AAGGTGCTCACCTTTATGCGTCGAGATCGATTTTTTGGGATTGCAAATAG
CTAGCCTTCGAATGTTCATTTCCAAATCATATTCCGTAATAAGCCGGCCT
TGAGAGCTCGGATGAAGGTCAATGAAAGCATAGCACCTTTATCGAACCGC
TCCTTCGTCCGAGGTGTGCAATATCGTATACACAGCTCTCGGCTTTCACC
AAGCGAGAGGATATTGAGATCGTGATTTGTGTGTTTGGTTGTAGAGAAGA
GGATGGAGGAGCTGTGTGTAGTGGGAAATGTGAACTTATGCGGTACCGCT
CTGGAGTGTTTGACTTCGAATAACACTCGGCATGAGCGAGACCGTAAAAG
TAAAATGGAATCATTGTACACACACACACACACACACACACACACACACA
CACACACACAGATAAATATATATTTCCTGAGGAAAACAATGAAGACACTT
GAAATTCAACTCTCCTATGAGTGAACCAACGTTGTCAAGAACAAGGAGTC
ATACCCCCCCCCCCCCCTCTCTTGTTCCCCCCTACCCCACCCACTCTGAT
CGCAAGGAGGTGTTAAAGGCACCTTTGAGCATAACAGGAAGGAGCGGTTG
ACCAGCGAGCGATCGCTCCTATGGGCACCGCGCGCTGTTCCCTCGAAGAC
GCCCGTAGTCGATGACATAACAGCGAAGGCATCAAAATTGTAACCCGAGT
ACACCGTTTATCCCCTTCTACGATCGATATAATTTGCCATGGTAGTTTAC
AGTGTATAACCTGGGTGCCAGAGTATTCCCTCCCCCTCCCCCCCTCCCCC
CCCTTGATTGGTTCAATCTGTGGATAATAACCAAGTAGTCCAGCAAGTTT
TGAAGATACTGAGCATATCGTACCTCCGTTTTGTTTTACGTTCATCGTCA
TGTTTTCTACTACAGTACACAGTAATTTGTGTATCTCTGCTTGCGATTTA
CACTCGCTCTTTATACTCTAGTACTTTTTTCAAACCGTATTTTCGTATTC
AAGGTAAGTACCGTCCTGTTGGTGAAGCTATCCTCGGTAATTGATGCGTG
TGTTGATGTCGCTACGTCGCTACGCCCCCCCCCCCCCCCACGCACACACA
CACGAATACCATCACGGAGACTTTGCTGTTCTCTGTGAAGAAAATATTAG
TTGCACTAGCAGCAGCAAGCAGCAATAGGCCACGGGTCACCTTGACTTTC
TAGCCGGTCAACAAACTAACCGACAAGGGGAAAACTACAGCTTGACCTTC
CAGAACAATGAGCAACGACAAACACCAGACGGAGGGGTGTGTCGTGATGC
TGGACCTGTGCATAAACTGCCGACCGACCAGGAATCTTTCGTTGACTGAC
AAAATTAAATTAACTTAGATACTAGCAAATAACATATAATTAATTTAATG
CTTTACACGTTACTATATAAATATAAACCTAATGTTAGTATTATTTTTTA
AAATAAAAACTAAACAATATATATATATATATACAAAAGAAAGCCAGCAA
AATGAATAAGAAAGATCCATCAACCAAAAATATAAAGGAAAAAATAAACC
TGTAACAACAAACTCACCTTAAACTAATCCAGCTAGACCCAAAATAAACC
TAACTAACTGAAAAATACCATTTAGTGTCCTCGCCCACTACGGATCGATA
CGTTTTTAGAGTTACCTGAGTACGGAGTTGAAATATTGCTTTGACAAATC
GTGCTGATGGATAGTGACAAGTGGGATGTATGGTGAGCTTCATTACCTCA
ATGGGGGAATGATGGAGATATGACATGGACGTTATTGATGTACGAAGTAT
GGCAAGTTGGTTACCCGCCATTCCCCCCCCCCTCCAAAGCTCGTCCCTGA
ATGTTCTTGCACTCCTTTCTTTGTTTTCACAGGAGCGAACTACAACCCTT
CTGCGATGAGCAACGCCTACT
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Coding sequence (CDS) from alignment at H-paniculata_contig12744:975..3995-

>mRNA_H-paniculata_contig12744.1727.1 ID=mRNA_H-paniculata_contig12744.1727.1|Name=mRNA_H-paniculata_contig12744.1727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig12744:975..3995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCTCCCCCGTCGCGCGTACCCCCCTCGCTTCCTGGAACGTGGTACCC
TCCCTCGATTCTCGGCACCAATGCACCTTCTTGCCCGCCACCACTCTCCC
GTCCCCCCGCAATGAATCAATCAATCCATCAATGCATCGTGTGTGCGATG
ATGACTCGGCGGAGTTTCGAACAGCAGCCTGTATACGGTGGAACAGGTGG
TGTTGGCGGCGGTGGTGGTGGTGTTCACGGGTCCACTTCCCATGGCCCAC
TCGCTGCACCCATACCACCATTGTCATCATCCATCGACAACAACAGGAAT
AGCAGCGCCTCCGCTCACGTTTCAAATTTCTCTTCTCCTTCTCAGTCTTC
TCCATATTCTGTTCCCGCGCCCCACGGCATTCCCCCCGGCGCCCTTACCG
GGGCCCACTACGGCAATAACAACACCCGAGTTAGTGGAGAGGCGGTTTAC
TACAACGATCCCTCGGTTGCCTCGACATATGGGGGGCTGCCAGCGGGGGC
TACGGCGGCTGCGCCCTACGGGCGCCCTGCCGGCGGGATGGCCCCCGGGT
TTGCCGGGGAAAGGGGGGGAGCTCCCTCCCCCGTCGCGCGTACCCCCCTC
GCTTCCTGGAACGTGGTACCCTCCCTCGATTCTCGGCACCAATGCACCTT
CTTGCCCGCCACCACTCTCCCGTCCCCCCGCAATGAATCAATCAATCCAT
CAATGCATCGTGTGTGCGATGATGACTCGGCGGAGTTTCGAACAGCAGCC
TGTATACGGTGGAACAGGTGGTGTTGGCGGCGGTGGTGGTGGTGTTCACG
GGTCCACTTCCCATGGCCCACTCGCTGCACCCATACCACCATTGTCATCA
TCCATCGACAACAACAGGAATAGCAGCGCCTCCGCTCACGTTTCAAATTT
CTCTTCTCCTTCTCAGTCTTCTCCATATTCTGTTCCCGCGCCCCACGGCA
TTCCCCCCGGCGCCCTTACCGGGGCCCACTACGGCAATAACAACACCCGA
GTTAGTGGAGAGGCGGTTTACTACAACGATCCCTCGGTTGCCTCGACATA
TGGGGGGCTGCCAGCGGGGGCTACGGCGGCTGCGCCCTACGGGCGCCCTG
CCGGCGGGATGGCCCCCGGGTTTGCCGGGGAAAGGGGGGGAGGAGCGAAC
TACAACCCTTCTGCGATGAGCAACGCCTACGAGCGAACTACAACCCTTCT
GCGATGAGCAACGCCTAC
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