mRNA_H-paniculata_contig9545.17267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9545.17267.1
Unique NamemRNA_H-paniculata_contig9545.17267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9545.17267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9545contigH-paniculata_contig9545:1358..1962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.5176218-UTR-H-paniculata_contig9545:1357..15931622931185.5176218-UTR-H-paniculata_contig9545:1357..1593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9545 1358..1593 +
1691481629.1293314-UTR-H-paniculata_contig9545:1357..15931691481629.1293314-UTR-H-paniculata_contig9545:1357..1593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9545 1358..1593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.5317478-CDS-H-paniculata_contig9545:1593..19621622931185.5317478-CDS-H-paniculata_contig9545:1593..1962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9545 1594..1962 +
1691481629.1395516-CDS-H-paniculata_contig9545:1593..19621691481629.1395516-CDS-H-paniculata_contig9545:1593..1962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9545 1594..1962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9545.17267.1prot_H-paniculata_contig9545.17267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9545 1594..1962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9545.17267.1

>prot_H-paniculata_contig9545.17267.1 ID=prot_H-paniculata_contig9545.17267.1|Name=mRNA_H-paniculata_contig9545.17267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MVQYLGTALASSRLADVRLCAAGANLLLLPQTHERQLHAKAKSKISSISV
LSASVFPRPQNSGLSVRSAVQFCLSSKIPHKISREQGVRGDDEATRRKVS
TGRAQHRLLSVATLNSSYGGERN
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mRNA from alignment at H-paniculata_contig9545:1358..1962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9545.17267.1 ID=mRNA_H-paniculata_contig9545.17267.1|Name=mRNA_H-paniculata_contig9545.17267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=605bp|location=Sequence derived from alignment at H-paniculata_contig9545:1358..1962+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCGCCCCCTCCACTAGCCGTTTGCATTGTATCCTACTATGGCCCCTC
TCCCCCACCCGCCTCCACTGAGCAGTAGCTGCGGAAGTAGCAGTACAGTA
CAGGTCCTCCTCTCTGGTTAATAATTCCCTGCGGACAAGCTCAAGAACAG
TTGTTTTATGTGCAAGGACGCCGCCTTGGTGTGCTGTGGGTGCCACGCCG
ACAAGCCAGTATTAACTTTCCTTCAGGGATAATCAGATGGTGCAATACCT
AGGGACAGCCCTAGCTTCTTCCCGCTTAGCAGATGTAAGGCTGTGTGCTG
CAGGCGCTAATTTGCTACTGCTGCCTCAAACACACGAGCGGCAGCTGCAC
GCCAAAGCAAAAAGCAAAATAAGCTCAATTTCAGTCCTGTCTGCGTCTGT
TTTTCCTCGCCCACAGAATTCAGGACTGTCTGTACGTAGTGCCGTACAGT
TTTGCCTCTCGTCTAAAATTCCGCACAAAATATCCCGGGAACAAGGAGTA
CGTGGGGACGACGAGGCCACCAGGCGAAAGGTCAGTACTGGGCGTGCTCA
ACACCGATTACTTTCAGTGGCAACGCTGAATTCGAGCTACGGGGGAGAAA
GAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig9545:1358..1962+

>mRNA_H-paniculata_contig9545.17267.1 ID=mRNA_H-paniculata_contig9545.17267.1|Name=mRNA_H-paniculata_contig9545.17267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig9545:1358..1962+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAATACCTAGGGACAGCCCTAGCTTCTTCCCGCTTAGCAGATGT
AAGGCTGTGTGCTGCAGGCGCTAATTTGCTACTGCTGCCTCAAACACACG
AGCGGCAGCTGCACGCCAAAGCAAAAAGCAAAATAAGCTCAATTTCAGTC
CTGTCTGCGTCTGTTTTTCCTCGCCCACAGAATTCAGGACTGTCTGTACG
TAGTGCCGTACAGTTTTGCCTCTCGTCTAAAATTCCGCACAAAATATCCC
GGGAACAAGGAGTACGTGGGGACGACGAGGCCACCAGGCGAAAGGTCAGT
ACTGGGCGTGCTCAACACCGATTACTTTCAGTGGCAACGCTGAATTCGAG
CTACGGGGGAGAAAGAAATATGGTGCAATACCTAGGGACAGCCCTAGCTT
CTTCCCGCTTAGCAGATGTAAGGCTGTGTGCTGCAGGCGCTAATTTGCTA
CTGCTGCCTCAAACACACGAGCGGCAGCTGCACGCCAAAGCAAAAAGCAA
AATAAGCTCAATTTCAGTCCTGTCTGCGTCTGTTTTTCCTCGCCCACAGA
ATTCAGGACTGTCTGTACGTAGTGCCGTACAGTTTTGCCTCTCGTCTAAA
ATTCCGCACAAAATATCCCGGGAACAAGGAGTACGTGGGGACGACGAGGC
CACCAGGCGAAAGGTCAGTACTGGGCGTGCTCAACACCGATTACTTTCAG
TGGCAACGCTGAATTCGAGCTACGGGGGAGAAAGAAAT
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