mRNA_H-paniculata_contig9540.17263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9540.17263.1
Unique NamemRNA_H-paniculata_contig9540.17263.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9540.17263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9540contigH-paniculata_contig9540:754..7787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size557
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9540.17263.1prot_H-paniculata_contig9540.17263.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9540 994..2812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.8902552-UTR-H-paniculata_contig9540:753..9931622931184.8902552-UTR-H-paniculata_contig9540:753..993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9540 754..993 -
1691481628.823241-UTR-H-paniculata_contig9540:753..9931691481628.823241-UTR-H-paniculata_contig9540:753..993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9540 754..993 -
1622931184.9611588-UTR-H-paniculata_contig9540:2812..28271622931184.9611588-UTR-H-paniculata_contig9540:2812..2827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9540 2813..2827 -
1691481628.8537998-UTR-H-paniculata_contig9540:2812..28271691481628.8537998-UTR-H-paniculata_contig9540:2812..2827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9540 2813..2827 -
1622931184.978193-UTR-H-paniculata_contig9540:7704..77871622931184.978193-UTR-H-paniculata_contig9540:7704..7787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9540 7705..7787 -
1691481628.863505-UTR-H-paniculata_contig9540:7704..77871691481628.863505-UTR-H-paniculata_contig9540:7704..7787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9540 7705..7787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.9118557-CDS-H-paniculata_contig9540:993..10801622931184.9118557-CDS-H-paniculata_contig9540:993..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9540 994..1080 -
1691481628.8340237-CDS-H-paniculata_contig9540:993..10801691481628.8340237-CDS-H-paniculata_contig9540:993..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9540 994..1080 -
1622931184.9407723-CDS-H-paniculata_contig9540:2680..28121622931184.9407723-CDS-H-paniculata_contig9540:2680..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9540 2681..2812 -
1691481628.8440917-CDS-H-paniculata_contig9540:2680..28121691481628.8440917-CDS-H-paniculata_contig9540:2680..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9540 2681..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9540.17263.1

>prot_H-paniculata_contig9540.17263.1 ID=prot_H-paniculata_contig9540.17263.1|Name=mRNA_H-paniculata_contig9540.17263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MEEGNDSAKLQEKVATFAEALRDKYGDASNALEDGHLDQAIEQELKGAPW
LSPFLPSSPEAMSTFVSFAGSW*
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mRNA from alignment at H-paniculata_contig9540:754..7787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9540.17263.1 ID=mRNA_H-paniculata_contig9540.17263.1|Name=mRNA_H-paniculata_contig9540.17263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7034bp|location=Sequence derived from alignment at H-paniculata_contig9540:754..7787- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGAACAGCTGACAGATCCAGTAATTTTCGTTTCTGCCCAGTCCATCA
GCAGTGTTACCACTGGAGCGCTGCACGCGACCGGTGAGTGGGCAATACAT
TGTAGTGCTGAACATGTTTTCCCTCGAGGAAGTTCTAGACATGACACATT
ATTCAAGGGGATCATCAAGATGGGTCAACAATACCTGTCACATGTTGTAT
CGTAGGACGAATCTAAGCTAAGCCTTAGCTATGTGCTGTACAGCTGCCTG
TACCCGTTATACGGTTGCGTATAGTCCGAGTTAATGGCACCCGTTCCCTG
TTACGTACACACGTGAAGGGCCTTGCTGGCTTTCGTTTGTCACCAAAACC
TGCAACTACCTGCATGAAATAAAGAACTGTTCCGAAATGACATCACCACC
CATAAAGCCTTTGTCCTTGTCATGCCCTAGTTTCTATTTTAAACCCCTGT
TTTCCTTTCATGAAGGTGGGGATTGTGCATATATACTCAGTACTTTTGTG
CCCGCTTTTTACGTGTTAGCTGTAGAACTCAGAGACGTAACTCAGTACGA
TGAATTAACTCTTACGCTCGCTCTTGCTTTCAGGGGTTAAGACATTATGG
TGCAGTGTGCGTGGGAGTAAATGCATTTTATACACGGAGCATTATGGCTG
TAAAGTCAAGTCTTATCGACTCTCGCCTAATCGATTCTCGCCTAATCGAC
TCTGAATCCTGACCACACTGATCGAAGAAGAATCGACTACTGAGTTTTAT
CAAAAACCGGATTTGGGTCTCGTACTATTAGTAGTAGGTGTCCACGTCTG
TGGAGACTGTTGCCAAAAGGTTCACGTTAATAGAGTCAGGCAAGTTAAAA
AAATCAAACTGAATAGCACTACCCACAGAGAGTCTCAAAACAACATGCAC
ACACCACTCACAGAAATACAGAGTGCACACGCGCTAGATCGCACGATGGC
CCTTACCCAGCAGCACGCGCCAGGCTTGGTTTGAGGGAATTCGCCGTGTA
CTGGGGAAGTAACAGCATTTCACATGCAATGGCAATTGCCAAAAATGTCC
CCTTTGACGTCGTGTGTTTTGGCCAGTTGCCCACGAAACATACCCGTTAT
TTTTCATTTTTGGGCTGACACGCGGCTCAGTTAATCAAGACCTAGAGCCC
AGACAATGTTTTATTCTACCTGGGCGAGCGACGGTCATCAAGGCAATCAA
TGTCCTGTGTTCTTTTGTCATGCGCTACAATCCACCGCATTTGGCTATCT
TTGACCGCTGGATCGACACGGAGGGATTTGGCCGTGCCTCACTCGCAATG
TCTTCTAATCACAGGCATGATCGTTTTATTTCGGTGCTTACCAGTTGCAA
AAATATGGTTTGAGGAGCATTGTCTACTTTTTCAGGGAGATGCCTGTGGA
ATCGCGTTTCTGGCACTAGAAAAGCGTGGTTAGCAGCGGTCAGCTTTTGG
GCAAGTTTCACGACTCTCCAGCCAGAATCGATTTTTCTAGCGAGGATCGA
TTTGTTATTTTGACAAGAGAAAGCCTCGTCGCTTACGTCCTGTTCATATC
TATAGGGAGCTAACGACTGTCTCATACATCGAACAATTGAACACATACAT
TTACGAGGCACTTGACAAAGCGAATGGCTTCTATATTCATACGCTTGACT
TTTTTTTCGTTGACGGGTACTATTGTTTGGGTAGCTCGTCTCTGTTCGTT
CGGGGGAGGGGTTGTGACGGAAAACAGATTGAATCTACGTTTGAAACGAA
TTTAATGTTCAAGGATGCGTGAAAAAGAGAACCTTGGGAAGAGAGATGAC
TGGGAGGGTCCTCTGGGTTGTAGAGGGGGGAGCTCCGGAGCAGGAGCAAC
AGGTGTCGCAGGACCTCACGATGCTGTAGATTCCTGGTAGAAGAGAACGG
CGGGGGCGGTTTTCCTTTTGGCGACTTGGGCAATGGGCGACGCTCTTTGT
CCATAGTGACAGGATGTCAAACTGCATTGAACATGGTAGGCTGTAGGCTC
CCAAGTGTGTGGAAGGTTTCCTAGAGGCCCTGATGCGTATATTAGGTTAA
TCATGGAAATCTGAAACGGTCAGGTTGGGGAGATTCAGGCGCCATCCCGA
TCATGTGTCCGAGCCTTGAGATCCCACCAGTTGGGAGGTCTCAGCAGCGT
TGATCGGGACGAGTTTCGAGTTCTCCCAACCATGTGTTCTTTCTCTTGGT
AACCATTTTGTACATGTGTGGGGAAAGATCCGGACCCTCTGAACGTGGTC
TCTACTACCTCGCCCGCCTTTTCACGGGACAAATTTCTTTCATTAGAGGT
AAAGTTTTTTTTCTTGTGGAATCATGGATGTGATGATAACTAAAATTGAG
TTGCGGATTATCTAACACACGTACGTTGCTGCGACTGTCACGGACTACGC
CGTACAATGCTCTGAGAACGGTACTGCTGGAGTGGTAGCTGTTGTCCCTT
TTCAGTGGTCTGGTATCTTGTATTAGCTGGCTATTGCCATACTTTCAGTG
TTCAGTGTCAGCCCTGGGTTGAGGCAAGTCTGACAGCTGAGGGGCAGCAC
GCTGGGTGCTTGTTGCTGACAATTCCAATTGAGGCTACATTACATAACCC
CCGGGATTGGGAGATGGAGCCGTCACTTTAGACAATGACTTTCACGTCCC
GCTATCAACATGACATAACACGGGACCTTGGATTCGCTTTCTCCCACTGC
TCGCGTACGGTCTTGTCATCTCCTCTATACTAGCTATGGTGTTGAGTAAA
GATCGTTGTAAATAGAAATGTTTAGACACTTCCGTTTTGAGAGTTTCATG
CGGTTGGCAACAGGTGACGGGTATGGTTCGTCGCTAGCTGTCGATGGTTT
TGCATTTCGAACGCATGCAAATAATGTTGGTGGATATTTGAACCAGAGTA
GTAGACGGCTTCTGTAGTGCGTGGGTTCAGGTTATTGACAGCTCAGGGTA
TCCCTTTCCTGCCGTTTGCCCCGAAAATATGCGTGAAAAAAGAATGGCTA
CTGATTGTTGTCGGAGCCAAGGACTCCAATCACTACCCTCGTAGCAGGTG
GGCGGAAAGCAGGAAAGCACACTTCCCCCCTAAAAAGACTAGAAATTCAT
AACACAAGTTATTGGTCATGAAACCCCCAAAAGGCCCGAATGCCCGTTTC
AGGCAAACTTTGGAGCACCTTTCCGATGTTTTTTACGAATCAAGTCGCAT
CACCTTCCTCATTCGCGAAAAAATGAACTATGCAAAACGGTAGTACATAG
GGGGGGGGGGCAGTCGCCGGGGAAATGGAGTAAATGACTATGTGGTGTGC
CTTCACTTCGAGGAGTGAAGCAGTCGAAAAATTCTTGGAGCGAACAGGTT
GGCGAAATTGATTCACTTGTTTTATAGTCAGAATTAGGAGGCTCGGACAG
TAGCCGTATCATACATCAAGCAACTGAATCGCAGTTGCGCACTGAGCGAT
GCTTGGGTTACTGACGAAGAGCTGATACCATTATTGTAGTAGCAACTCCA
TTGTAACTGGAGAATGGGGCTGGTTAAAGAGAGGTAAAGATCGAGTGTAC
GGCCGGAGGATGATGGAAGCACAAGCCCTACTTGGATTGAGCATTGTGAG
TTTTGTGTCCGGCAGTCTTGCGGAGTATTGCGTTTGCGCATGATCTATGA
CCAACAGTTTTCCCAACCCCTGACATCCCAAGAATAAGTAAATCCAACGC
CCTTAGTGAAACAAAACATTTTTTTGGAACATGGCACTTAGAAAGGTTTC
ACCATCAGAATCGGAACATGACGTGGATTAGTCTCACTACCCGGCCTAAA
TATGGTGTCATGCTGAAAACGACGGACGCACACTAAAACAGACGGACGTA
TCGAATTGCTACGCTGATTTGCGCGCGACAGCCAGCTCGTGCACGACCGA
ACATCCGAGTTTCGTTCCCAAAGAAAAATGTATGCTACCTCGGTGCGATA
GACCTATGACATAATATAGACAGCCAACAAAGCTGCACGGAAATCTCGAC
GCATGGAACCACTCAATGGATGCAAACACATAACCTATACAACGCTAGAT
AATGACACATGTTGTCTCCACGCCAACTTTCGAGGTTCAAATTGCTTCAG
GAAATGACCACGAGCACAGTGCAATTTACGGTAAAAAGCGCATGACCAAA
ATGGGAAGTTTTCTGGGAAAGAGACAACGAGATATCTTGTCGGAATATAC
TTCCTCTGTGCCATAAGTAAAGTCGGTTGTGTTTGGGAGATCAAGTCTCC
AGGTCTAAGATTGTTCAGAGGCTGCGGCTCAACTCGTTGGAAAACAAAAT
TCTGATAGATTCATATGCGCTATTTCAAAGTGCATTCCGATTCGTGTATT
GGAATTATTGACCCCTCAACGTTGGGCTAATTTTGACCATTTTTCCCGTT
TTTTTTCTTTTTCGATTTTCACGTATTTCCAACGGGAAAATGAAAAAAGG
GGCAAAAGTATGGCATTATTTCGGTCAAATGCTCTATTTTCCATCCCGCG
CGTACTCGGCGGACTCCAACAATCTCCGCGGAATTTTGGCGATCAACCCC
AAAAATACGTATAATCCTGATAAAAAATAGAAATTAAATCGGACATATTT
GAGTTCTATAATCATAACTGTCTTTACCTGTCGCCCAGAGGAAGTATGAG
GTATTTCGGAAACTGACATATACACCTCTTGATTGAAACAGTGTAGCTAG
CGCAAGTGAATCAGTCAGCACGTAGAACTCCCGCTGGAAAAGTGGAAGCT
CTTTCCGATACTCCCTAAAAGGAGCACAGCGTGCAGCGATATCAGCCGCC
ACGATGTAAGCATCGAGCAAAACAACAGGCACCCATTGTTTAATAATGTA
TATGCCGAATGAATTCTTGCAGCCGAAGCGCTGTTTCACTCTTTTATTTA
AATTGCAAAGCTGGTCTGGTGAGCTCTATGCTGTCGTACGCACTCGAACC
ACTATTATAGGATACGTTTTTCGCCATGGAGGAAGGAAATGATTCGGCAA
AGCTGCAGGAGAAAGTGGCCACTTTTGCTGAGGCGTTGCGAGATAAGTAC
GGTGATGCCTCGAACGCGCTCGAGGATGGTCATCTCGACCAAGCAATTGA
ACAAGAGGTGAGGCCACTCGTTGTTGATCGGCGAGAGCGTCCGTTCCTTA
CCACCACTGCTTTCCTGCCCAGACGTTACCCTGGAGCCGGGGAGATATCG
CCTTTACTGTCTGTGTTCAGCTCTTCGTCCCTACCTGATGCATCCGATTG
TATCCAGCATGCAGCCAGTGCTGCATCTGCTTGTATAGGCCAGTGCCGAT
GAAAGATGAATCTCAAGCTACAACAAACTTTTTTAACTTACAATATAGGG
AATAGGTCCGAAAGGGTTCAATGGAGAATTGATCGTGAACTTTCACAGCT
TTACCGGTTTTATGCTGGGAATCGTTCCTCTCGTACATGTCATAAATAAA
CGAGCAGATCGCACATACACACAAGGGAGCACTTTGTGCCGGTACCTTGG
TGCTATGCTAATTTCGCTCGGTTGATTTTTTTTGTTTTTTCGAAATTCGG
TTCCCGCCTACAATAACCGGGTGTGGAAGCATATTCAGCAAAGTAGCGTT
GATAAGGTTTAAACGCAGGGTGTATTCGTGTAGCCTCAGCTCTACAATTT
CTCAAGCTTTAACATGAGCAAATCAAGGGATTGTAGGGATATCTACAGTT
GCCGGTTGCGTGCATTTTGATTTCACTCTGTGAGTGTATGGTGACAATAT
ATCAATACGACAAAATGGCACAATGCACTTGCCAAGACATTCAATATATT
GCGGAACATCGAAGAAGTTGCGGGTAAACGACTGGACCATTAGATGTCTT
TCTGTTACGGCGGATCATTTTGTTTCACAGTATATTCCGGGGTATTTCCA
ACTTTTCGTGTCCTCACGGACTGTTACTGCTTCCCCTCCTCCCGTCTTCC
ATCATGCAGCGGTGCTCCCCTTTCATGCAATATTTTTCCCGCTAAACGAA
ACGTCGTATTTGGTGATGAAACGGCTTTCAGGTGTGCGATTTGGGTCGAT
GATGTAGTCGAAGTGCTTTGGCGTAAGACGTAGAATTGGTGGGCGCTCTT
TTGTGAGGGGGTGGGGACCGGGTGGACGTACCCCCGCCCGAGGGGGCGCT
TCGACCCCTCCCACCCACAGAATTGGGGGGGGGGGGGGGGGGCAGAAGTG
CTGCTTCGCCACTTTACCTTCACCGGGAAACGGTTGGGAGCCACGGGCAG
TGGCTCCTTGCCGTCAGTTTAACTGGTGCACAATATGATACACGGAACTG
CTTGAAAATCCTGACTCGCCGAATCAACTCGTTGGCCCAACTAGATCATA
ACTCTTGATATACATACTTTCAGAAAGAAATCCTGGAAACGTTTCCCTTA
GTGTGTCCACGAAAACTGTAAATAGTTGCGGATTTGAGCTCGACCGTGTG
AACTTTGTTTAGGTCAAGTCAGCATTTTGCGATTCGCAAGGTGGCCGAAG
TACCTGGTCCATACATATGGGGTACGCGTCAGATACATGACGCACCGTTT
ACGTGCTGCAGTGGGTTGGCGCTGACCAGCGAGGTTGGTTTTAATACTCG
AACGTCCTTGAATTTTTTCGGGCAGCTTAGAGTTTGACTTACCTATCCTC
CATGCCCCCATCGTTACCCTTTCCTTTCCCCCCTCACCTATGCTACTCCA
TCGCCAGTTGAAAGGTGCTCCTTGGCTGAGTCCGTTCCTTCCGTCCTCAC
CGGAGGCAATGTCAACGTTCGTCAGCTTTGCAGGCTCGTGGTAAACAAAT
ATCCGGTGTCGTTGAATCCGGAGATTGTCGACTTTAATAGTTAAACAGCG
CTGACGTGCAGTAGTCGATGCTCTTCGGAGGTCTGATTGTCTCAGTGTCT
GTACTCCAAGACATGACCATATGGTTGCGTTCATCTGTCTTGTCCACTCA
ACGTATGGTGTTAGGTATGTACTCCATCTTGGGACTATCTTGCAACGCAT
GATAAATTTTACTGTAGGCGATTTTCAACCTACC
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Coding sequence (CDS) from alignment at H-paniculata_contig9540:754..7787-

>mRNA_H-paniculata_contig9540.17263.1 ID=mRNA_H-paniculata_contig9540.17263.1|Name=mRNA_H-paniculata_contig9540.17263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig9540:754..7787- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGGAAATGATTCGGCAAAGCTGCAGGAGAAAGTGGCCACTTT
TGCTGAGGCGTTGCGAGATAAGTACGGTGATGCCTCGAACGCGCTCGAGG
ATGGTCATCTCGACCAAGCAATTGAACAAGAGATGGAGGAAGGAAATGAT
TCGGCAAAGCTGCAGGAGAAAGTGGCCACTTTTGCTGAGGCGTTGCGAGA
TAAGTACGGTGATGCCTCGAACGCGCTCGAGGATGGTCATCTCGACCAAG
CAATTGAACAAGAGTTGAAAGGTGCTCCTTGGCTGAGTCCGTTCCTTCCG
TCCTCACCGGAGGCAATGTCAACGTTCGTCAGCTTTGCAGGCTCGTGGTA
ATTGAAAGGTGCTCCTTGGCTGAGTCCGTTCCTTCCGTCCTCACCGGAGG
CAATGTCAACGTTCGTCAGCTTTGCAGGCTCGTGGTAA
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