mRNA_H-paniculata_contig9539.17260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9539.17260.1
Unique NamemRNA_H-paniculata_contig9539.17260.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 3.320e-59
Identity = 120/267 (44.94%), Postives = 168/267 (62.92%), Query Frame = 1
Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLGP 1914
            H+W TDETG T Q TK  K+ITE GQKV G  RS+SREN+TVV T++AAGA + P II+KGQ + A       + V+ +  PP ARL     S        +++++F R L   G  +  P +LVLD HASHV  +VV+LA  +NI L+ +PSH  H+ QPLDV +FG+FK+ IT  ++ F  ++G ++  K++M+ ++   W RSF+  +  +SF GAGLW V+ +RA+ RL+GVGKRK R   RP + DI      K L  +LGP
Sbjct:  164 HLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQA-------DWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITGAISDKHLADNLGP 423          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 3.490e-57
Identity = 135/342 (39.47%), Postives = 196/342 (57.31%), Query Frame = 1
Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLGPIQCGS*NPQATCSPALGLARSSSVNS*RLKSA*RVHQSHMECWRSH----EGGLLT--SVLTKYRENASRKKEEE 2121
            H+W TDETG T Q TK  K I E GQKVVG  RS+SRE +TVV T++AAGA + P II+KGQ + A       + V+ +  PP ARL     S        +++++F R L   G  +  P +LVLD HASHV  +V++LA  +NI L+ +PSH  H+ QPLDV +FG+FK+ IT  ++ F  ++G ++  K++M+ ++   W RSF+  Q  +SF GAGLW V+ +RA+ RL+GVGKRK R   RP + DI +    K L  +LGP        +  C    G+  ++ +    +K+  +  Q  +   R      EGG +T   V+ KY E+  +K E E
Sbjct:  164 HLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQA-------DWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKNLADNLGPRTVRELQQKGQC--VKGILINTVMLGAFVKA--KKKQKKLAITRKSQGLPEGGAITCDDVMHKYLEDERQKVEAE 494          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 2.550e-55
Identity = 122/266 (45.86%), Postives = 158/266 (59.40%), Query Frame = 1
Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911
            HVW TDE+G T Q T+ ++++ ERGQ VV   RS+SREN T+V T+NAAGAV+ PTIIFKGQ  +   +  + NG      PP A   C + S         ++K F + LG     D KP +LVLD HASHV L V++LA+S+NI L  LPSH  H+ QPLDVA FG FKK +   +  F  ++G  +  K +M  +I   W  SFT    KASF GAGLW V+ +RAL RL    KRK    DRP L D+P+    + LE  +G
Sbjct:  178 HVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADL-NG------PPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRLLRP-KRKVTETDRPPLEDVPIAVTNERLEELIG 435          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.010e-54
Identity = 137/353 (38.81%), Postives = 201/353 (56.94%), Query Frame = 1
Query: 1123 PTCGKHVWK--TD----ETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLGPIQCGS*NPQATCSPALGLARSSSVNS*RLKSA*RVHQSHMECWRSH----EGGLLT--SVLTKYRENASRKKEEE 2121
            PTCG  + +  TD      G TPQ TK  K+I E GQKVVG  RS+SR+N+TVV T++AAGA + P II+KGQ + A       + V+ +  PP ARL     S        +++++F R L   G  +  P +LVLD HASHV  +VV+LA  +NI L+ +PSH  H+ QPLDV +FG+FK  IT  ++ F  ++G ++  K++M+ ++   W RSF+  Q  +SF GAGLW V+ +RA+ RL+GVGKRK R   RP + DI +    K+L  +LGP        +  C    G+  ++ +    +K+  +  Q  +   R      EGG++T   V+ KY E+  +K E E
Sbjct:  161 PTCGTQMRQEYTDLERAVPGSTPQGTKTMKVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQA-------DWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKDLADNLGPRTVRELQQKGQC--VKGILINTVMLGAFVKA--KKKQKKLAITRKSQGLPEGGVITCDDVMPKYLEDERQKVEAE 502          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.270e-54
Identity = 115/266 (43.23%), Postives = 159/266 (59.77%), Query Frame = 1
Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911
            HV  TDETG TPQ  K  K   + GQKVV + R++SREN T+V T++A G+   PTIIFKGQ +         +    +  PP AR TC   S         +LK+F + L   G  D KP IL+LD HASHV+++V++LAM +NI LF LPSH  H+ QPLDV AFG FK+ +T  ++ + +  G  +  K ++  VI   W  +FT  + ++SF GAGLW VNM+RA+ RL+G  KR      RP L D+P+    ++LE+ +G
Sbjct:  162 HVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQP-------DWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIG 420          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.390e-54
Identity = 120/264 (45.45%), Postives = 154/264 (58.33%), Query Frame = 1
Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERS 1905
            HV  TDETG TPQ TK  K   E GQKVV + RS+S EN TVV T++A GA   PTIIFKGQ +         +    +  P  AR TC   S         +LK+F + L   G  D KP  LVLD HASHV+ +V++LAM +NI LF LPSH  H+ QPLDV AFGTFKK +T  +  +   +G  + +K ++  VI   W RS T+ +  ASF GAGL  V+M RAL RL+G  KR+     RP L D+P+    ++LE +
Sbjct:  158 HVHNTDETGPTPQGTKTMKAFAEAGQKVVESMRSNSLENTTVVTTISANGATWAPTIIFKGQRLQP-------DWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSLTLERNNASFGGAGLRPVDMDRALTRLQGTAKREEGPTGRPPLEDVPIAMTHEQLEEA 414          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.640e-53
Identity = 115/266 (43.23%), Postives = 159/266 (59.77%), Query Frame = 1
Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911
            HV  TDETG TPQ  K  K   + GQKVV + R++SREN T+V T++A G+   PTIIFKGQ +         +    +  PP AR TC   S         +LK+F + L   G  D KP IL+LD HASHV+++V++LAM +NI LF LPSH  H+ QPLDV AFG FK+ +T  ++ + +  G  +  K ++  VI   W  +FT  + ++SF GAGLW VNM+RA+ RL+G  KR      RP L D+P+    ++LE+ +G
Sbjct:  403 HVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQP-------DWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIG 661          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.580e-52
Identity = 120/258 (46.51%), Postives = 150/258 (58.14%), Query Frame = 1
Query: 1162 GVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911
            G T Q  + +++  ERGQ VV   RS+SREN T++ T+NAAGAV+ PTIIFKGQ  +        + +  Q  PP A  TC + S         ++ +F   L      D KP +LVLD HASHV+L+VVELA S+NI L  LPSH  H+ QPLDVA FG FKK +T  +  F   HG  +  K +M  VI Q W+ SFT    KASF GAGLW V+ +RAL RL    KRK R  DRP L D+P+      LE  LG
Sbjct:   98 GGTIQGAQGQQVYAERGQPVVPQMRSTSRENCTIITTINAAGAVLAPTIIFKGQRFNG-------DWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKP-KRKERETDRPPLQDVPIAVSNDRLEELLG 347          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 6.210e-51
Identity = 112/248 (45.16%), Postives = 145/248 (58.47%), Query Frame = 1
Query: 1192 KIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911
            K   E GQKVV + RS+SREN TVV T++A GA   PTIIFKGQ +         +    +  P  AR TC   S         +LK+F + L   G  D KP ILVLD HASHV+ + ++LAM +NI LF LPSH  H+ QPLDV AFGTFKK +T  +  +   +G  + +K ++  VI   W  S T  + KASF GAGLW V+M RAL RL+G  KRK     RP L D+P+    ++LE ++G
Sbjct:    2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQP-------DWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVPIAMTHEQLEEAIG 242          
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.570e-50
Identity = 115/257 (44.75%), Postives = 149/257 (57.98%), Query Frame = 1
Query: 1168 TPQYTKAKKIITERGQKVVGTKRSSSRENIT-VVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911
            TPQ TK  K   E GQKVVG+ RS+SREN T VV T++A G    PTIIFKG  + A       +    +  P  AR TC   S        ++LK+F +  G  G  D KP IL+LD H+SHV ++V  LAM++ I L  LPSH  H+ QPLDV AFG FKK++T  + +F    G  + +K +M  VI   W  SFT    K+SF GAGLW VN +RAL RLKG   +K R  +RP L D+ M    ++LE+ +G
Sbjct:  148 TPQGTKTTKAFAESGQKVVGSMRSNSRENTTTVVVTISADGHTWAPTIIFKGHRLQA-------DWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHVRVEVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLKGTANKKERRAERPPLQDVTMAALNEQLEKDIG 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5E2_9PHAE3.320e-5944.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI3.490e-5739.47Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JYX7_9PHAE2.550e-5545.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK80_9PHAE1.010e-5438.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV04_9PHAE2.270e-5443.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS6_9PHAE5.390e-5445.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JJ12_9PHAE3.640e-5343.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KH00_9PHAE2.580e-5246.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGL1_9PHAE6.210e-5145.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYS0_9PHAE2.570e-5044.75DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9539contigH-paniculata_contig9539:3163..5802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2234
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9539.17260.1prot_H-paniculata_contig9539.17260.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9539 3671..4249 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.0577831-UTR-H-paniculata_contig9539:3162..36701622931184.0577831-UTR-H-paniculata_contig9539:3162..3670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9539 3163..3670 +
1691481628.5151098-UTR-H-paniculata_contig9539:3162..36701691481628.5151098-UTR-H-paniculata_contig9539:3162..3670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9539 3163..3670 +
1622931184.096082-UTR-H-paniculata_contig9539:4249..43241622931184.096082-UTR-H-paniculata_contig9539:4249..4324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9539 4250..4324 +
1691481628.536381-UTR-H-paniculata_contig9539:4249..43241691481628.536381-UTR-H-paniculata_contig9539:4249..4324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9539 4250..4324 +
1622931184.109821-UTR-H-paniculata_contig9539:4730..58021622931184.109821-UTR-H-paniculata_contig9539:4730..5802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9539 4731..5802 +
1691481628.5454834-UTR-H-paniculata_contig9539:4730..58021691481628.5454834-UTR-H-paniculata_contig9539:4730..5802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9539 4731..5802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.0788805-CDS-H-paniculata_contig9539:3670..42491622931184.0788805-CDS-H-paniculata_contig9539:3670..4249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9539 3671..4249 +
1691481628.5265021-CDS-H-paniculata_contig9539:3670..42491691481628.5265021-CDS-H-paniculata_contig9539:3670..4249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9539 3671..4249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9539.17260.1

>prot_H-paniculata_contig9539.17260.1 ID=prot_H-paniculata_contig9539.17260.1|Name=mRNA_H-paniculata_contig9539.17260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MSGAQRLSSPLPQLHTVPDLQYHCLSLLPFCEFQEYPTCLPSMLRRTMYP
ANAQGAVDAVRGGQMNYRETATVFGVSKNSIKRRVKGHVTIDAQVGQPIV
LTQEEEDKVEDTMLWAAHRHLGVSRAELMERVRVLCSDDCKVQWDREKSP
EREWLDPFFARHLCLSERRSRIYQANRITVSDETRLRAFYTS*
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mRNA from alignment at H-paniculata_contig9539:3163..5802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9539.17260.1 ID=mRNA_H-paniculata_contig9539.17260.1|Name=mRNA_H-paniculata_contig9539.17260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2640bp|location=Sequence derived from alignment at H-paniculata_contig9539:3163..5802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCCTGAATCGAATAATTTTGAGATTCGAGGTTTGATTAACGGATGAA AACCTTTTAATCGATGCCAAATTATCGTAAATATTGTTGTGGCAGGTGGG GGGTTGACTGTGGCTATTGACGAAAACGCTGTCTGCAAACAATAGCAACA GCTTAAGAGGTAAACGATCAGTACCACTTACAGGACACTACTTCTAAACC ACTGAAACTTTGTATAGAGTGGCTGAAATCCCTTTTTTCTTGTTTTTTGC GGAGATGTTTACACTTTGTTTGAGCCTACAGTAGTTGCGTGGGGAACAGA AAACACTGCTCGTAGCTCGAGAAGCAGAAGTCTGATTGAGCTCCAACTTG TTGTGTCAAAAACATGTTCCGAGAATTTTCAACCTTCTTGCTAGGTGTAC TTGGGCCCAAGGTGTTTCAAACCTTTTAGCTTTGTTCAGCTCGAAGCTCT GTAACTTTGTAAAGCCACGGCTCTACTGTAGCACTCCACAGGTTAGTGTG ATCTCGGCATGAGTGGCGCGCAACGCTTGAGCTCCCCTTTGCCACAATTA CACACCGTACCCGACTTACAGTACCATTGCTTGAGCTTGCTACCTTTTTG CGAATTCCAAGAATATCCGACCTGCTTGCCAAGCATGCTCCGGCGCACCA TGTACCCCGCCAACGCGCAAGGGGCTGTTGATGCAGTGCGCGGTGGTCAG ATGAACTACCGCGAGACAGCTACGGTATTTGGGGTCTCCAAAAACAGTAT AAAACGCCGGGTGAAGGGCCACGTGACCATTGATGCTCAAGTTGGACAAC CCATCGTACTCACCCAAGAGGAAGAAGATAAGGTCGAAGACACAATGTTG TGGGCCGCGCATCGGCACTTGGGGGTGAGTAGAGCGGAGCTGATGGAAAG AGTTCGTGTGCTCTGCAGCGATGATTGTAAGGTGCAATGGGATAGAGAGA AGAGCCCCGAGCGCGAGTGGCTCGATCCATTCTTCGCGAGGCACCTTTGT CTGTCGGAGCGCCGCAGCCGCATCTACCAAGCGAACAGAATCACGGTAAG CGATGAAACTCGCTTGAGAGCATTCTACACTAGCTGAGTGGAAACGGTGG CCAACCTACAGCCGGCAGCGAACCCACGTGTGGAAAACACGTGTGGAAAA CCGACGAAACAGGTGACTACTCGCATGATGCATGTGCACTACGTTAGGTC CCCCGAAGACGGCGCTCCCCACGTAGGGTAAGAAACGAGTACTTTGCACC AGATATTTTTGTCATTTTTGTCATTTTGAACCTTCAAAAAGAACTTCGCC TAATGGAGAAGAAAATACCGCCGCCATTTCTTGTCCCTGACGGAAAAAAT TCCCGCACCCCCTTGAAAATCTCCCGGTAGCACTCCGCCGAGTGCACTCA CCACACCAGCAGAAACCAATATTGTACGCTTTTTTCGGCAGCCGCCCGTA AAATGACCTAACTTTCCCCTCTGGTAATGGCCATCCGTCTTTACGGTAGG TTGCTGGCCGGTCGCCTGCAATAAATGGCTGACATTTTGAATTAAAAAAT TGAACTCTATGGTTTCAGGTGTCACTCCCCAATATACCAAGGCGAAGAAG ATCATTACAGAGAGGGGGCAGAAGGTGGTCGGCACGAAGCGCTCCAGCTC CCGGGAGAACATCACGGTGGTTGCCACTGTGAACGCGGCCGGGGCCGTCA TGCCACCCACAATCATCTTCAAAGGGCAACCGGTGCATGCGGCGTGACTC GGTACTGTTGACAATGGGGTCCGGGCACAACGTACACCGCCACCGGCTCG TCTTACATGCAGGAAATGATCTTCGTTTCTCAAAGAATTTGACCGCCACC TCGGTGCTAGTGGCTTCAAGGACAGAAAGCCTCCTATTCTTGTCCTTGAT CATCATGCCTCGCACGTGAACCTCCAAGTCGTCGAGTTGGCGATGTCTAT GAATATTGAGCTGTTCTAGCTCCCTTCTCATCCCGTCCACATGAACCAGC CATTGGACGTCGCTGCTTTTGGCACCTTCAAGAAGGCAATCACCTCAGAC GTCACGACTTTTGGGCAACAGCACGGTTGCAAGATGCTGGTGAAAGCGGA GATGGTCTGCGTTATCGAGCAACCATGGGCCAGGAGTTTTACAGTACCAC AGATCAAGGCGTCGTTCCAGGGGGCAGGATTGTGGCTAGTGAATATGCAG CGCGCTCTGGACAGGCTAAAAGGCGTCGGGAAGAGAAAGTCCCGACTTGA CGACCGCCCACACCTGGCCGACATCCCCATGGTGACTAGGCAGAAGGAGC TCGAACGGTCGCTCGGCCCCATTCAGTGCGGCAGCTAAAATCCACAGGCA ACATGCTCACCGGCACTAGGATTGGCACGGTCTTCTTCGGTGAATTCCTG AAGGCTCAAGAGCGCATAACGCGTCCATCAATCTCATATGGAGTGTTGGC GGAGTCACGAAGGGGGGCTCCTCACCAGTGTCCTCACCAAGTATCGTGAG AACGCTAGCCGGAAAAAGGAAGAGGAACGACAGAAGGACGAACGTGCGCA TGCTCGGGCGGCGAAACGAGTGGCAAACGAGGCATCTGCCGATCAGTCAG GCAGGGGTGGTGGCCGAGACGGAAAAGGCTGCGGCCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9539:3163..5802+

>mRNA_H-paniculata_contig9539.17260.1 ID=mRNA_H-paniculata_contig9539.17260.1|Name=mRNA_H-paniculata_contig9539.17260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig9539:3163..5802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGCGCGCAACGCTTGAGCTCCCCTTTGCCACAATTACACACCGT
ACCCGACTTACAGTACCATTGCTTGAGCTTGCTACCTTTTTGCGAATTCC
AAGAATATCCGACCTGCTTGCCAAGCATGCTCCGGCGCACCATGTACCCC
GCCAACGCGCAAGGGGCTGTTGATGCAGTGCGCGGTGGTCAGATGAACTA
CCGCGAGACAGCTACGGTATTTGGGGTCTCCAAAAACAGTATAAAACGCC
GGGTGAAGGGCCACGTGACCATTGATGCTCAAGTTGGACAACCCATCGTA
CTCACCCAAGAGGAAGAAGATAAGGTCGAAGACACAATGTTGTGGGCCGC
GCATCGGCACTTGGGGGTGAGTAGAGCGGAGCTGATGGAAAGAGTTCGTG
TGCTCTGCAGCGATGATTGTAAGGTGCAATGGGATAGAGAGAAGAGCCCC
GAGCGCGAGTGGCTCGATCCATTCTTCGCGAGGCACCTTTGTCTGTCGGA
GCGCCGCAGCCGCATCTACCAAGCGAACAGAATCACGGTAAGCGATGAAA
CTCGCTTGAGAGCATTCTACACTAGCTGAATGAGTGGCGCGCAACGCTTG
AGCTCCCCTTTGCCACAATTACACACCGTACCCGACTTACAGTACCATTG
CTTGAGCTTGCTACCTTTTTGCGAATTCCAAGAATATCCGACCTGCTTGC
CAAGCATGCTCCGGCGCACCATGTACCCCGCCAACGCGCAAGGGGCTGTT
GATGCAGTGCGCGGTGGTCAGATGAACTACCGCGAGACAGCTACGGTATT
TGGGGTCTCCAAAAACAGTATAAAACGCCGGGTGAAGGGCCACGTGACCA
TTGATGCTCAAGTTGGACAACCCATCGTACTCACCCAAGAGGAAGAAGAT
AAGGTCGAAGACACAATGTTGTGGGCCGCGCATCGGCACTTGGGGGTGAG
TAGAGCGGAGCTGATGGAAAGAGTTCGTGTGCTCTGCAGCGATGATTGTA
AGGTGCAATGGGATAGAGAGAAGAGCCCCGAGCGCGAGTGGCTCGATCCA
TTCTTCGCGAGGCACCTTTGTCTGTCGGAGCGCCGCAGCCGCATCTACCA
AGCGAACAGAATCACGGTAAGCGATGAAACTCGCTTGAGAGCATTCTACA
CTAGCTGA
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