mRNA_H-paniculata_contig9535.17259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9535.17259.1
Unique NamemRNA_H-paniculata_contig9535.17259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 83.6 bits (205), Expect = 3.390e-16
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            RR   A   F   + +V+    ++L+TK+ +FK  V+  LLY   TW L   H  +L  + + S    + +      T HS      LER  C  +E+ ++KR  ++AG+ + + DERLP +++ GEL  G R  G+P ++    + D +    +P+  WE
Sbjct:  131 RRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWE 286          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 83.6 bits (205), Expect = 8.060e-16
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            RR   A   F   + +V+    ++L+TK+ +FK  V+  LLY   TW L   H  +L  + + S    + +      T HS      LER  C  +E+ ++KR  ++AG+ + + DERLP +++ GEL  G R  G+P ++    + D +    +P+  WE
Sbjct:  198 RRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWE 353          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 83.6 bits (205), Expect = 1.080e-15
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            RR   A   F   + +V+    ++L+TK+ +FK  V+  LLY   TW L   H  +L  + + S    + +      T HS      LER  C  +E+ ++KR  ++AG+ + + DERLP +++ GEL  G R  G+P ++    + D +    +P+  WE
Sbjct:  484 RRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWE 639          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: UPI00200FE13E (uncharacterized protein LOC125233589 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200FE13E)

HSP 1 Score: 75.1 bits (183), Expect = 3.030e-13
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   31 FNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            F   Q +V++  K++L TK+ ++K+ VL +LLY   TW        RL  +H       LG+  R   TN  +     L+  GC  I AT+++R  R+ G+ + +  +RLP  +M  E+    R  G+P  +       D+   GI  + WE
Sbjct:   45 FGKLQARVWNNSKLKLSTKILVYKSCVLSILLYASETWTTYSRQERRLNAFHMRCLRTILGVTWRDHITNERV-----LDLAGCYSITATLKQRRLRWLGHVLRMDPDRLPRAVMLSEIAYAKRPIGRPLLRFKDSCKRDMLSFGIDPSTWE 191          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A2W1BQA3_HELAM (C2H2-type domain-containing protein n=3 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BQA3_HELAM)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-12
Identity = 45/152 (29.61%), Postives = 69/152 (45.39%), Query Frame = 1
Query:   31 FNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            F     +V+   K+ + TK+ ++KT VL  LLY   TW        RL  +H       LG+  +   TN      A L +T C  I AT+++R  R+ G+   +  ERLP  +M G++    R  G+P  +   C   D++   I    WE
Sbjct:   52 FGKLSTRVWRNNKLTITTKILVYKTCVLNTLLYGSETWTTYSKQERRLNAFHMRCLRVILGVTWKDRVTNE-----AVLSKTNCNSILATLKQRRLRWLGHVHRMDTERLPREVMLGQIADAKRRVGRPNLRFKDCCKRDMDSFNINANSWE 198          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA)

HSP 1 Score: 71.6 bits (174), Expect = 3.990e-12
Identity = 44/156 (28.21%), Postives = 74/156 (47.44%), Query Frame = 1
Query:   19 AHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            A   F   +R V++   + L TKL++++  V+  LLY C TW +   H  +L  +H  +C   L    R    +H +     L R     +   +EK   R+AG+   + D+R+P V++ GEL  G R  G+P  +    +   +  + IP+  WE
Sbjct:   18 ASSAFGRLRRTVWERRGIILSTKLKVYQAVVVTTLLYACETWTVYSRHARQLNHFH-TTCLRKL---MRIRWQDH-IPDTEVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWE 168          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 72.4 bits (176), Expect = 7.280e-12
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 1
Query:    4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQ 426
            RR   A   F   + +V+    ++L+TK+ +FK  V+  LLY   TW L   H  +L  + + S    + + +    T HS      LER  C  IE+ ++KR  ++AG+ + + DERLP +++ GEL  G R  G+P ++
Sbjct:  214 RRIAKASSSFGRLKDRVWKSHDIKLETKIGLFKAVVISTLLYGGETWTLYARHIKKLEVFQQRSLRSIMRV-NWEEKTPHS----EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKR 349          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 70.5 bits (171), Expect = 4.030e-11
Identity = 40/156 (25.64%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   19 AHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            A+  F   ++ V+D   +R  TK+++++  VL  LL+ C TW +   H  +L  +H  S    LGI  +    +  +  RA L      + ++ +     R+AG+   ++D RLP +++ GEL  G R +G   ++    +   +    I    WE
Sbjct:  741 ANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKVPDTEVLVRADLPSIFTILAQSQL-----RWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWE 891          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A7D9IPZ0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IPZ0_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 1.350e-10
Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 1
Query:    4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIR 402
            RR   A   F   + ++++   ++L+TK+ +FK  V+  LLY   TW L   H  +L  + + S    + +      T HS      LER  C  IE+ ++KR  ++AG+ + + DERLP +++ GEL  G R
Sbjct:  675 RRTAKASSSFGRLKDRLWNSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLEREKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNR 802          
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: UPI00200C769B (uncharacterized protein LOC125238175 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C769B)

HSP 1 Score: 63.9 bits (154), Expect = 5.950e-9
Identity = 43/156 (27.56%), Postives = 68/156 (43.59%), Query Frame = 1
Query:   19 AHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486
            A   F     +V+   K+ + TK+ +++T VL +LLY   T         RL  YH       LG+  +   TN      A L +T C  I A +++R  R+ G+   +  ERLP  ++ GE+    R  G+P  +       D+    I +  WE
Sbjct:  151 AAATFGKLASRVWKNNKLTIATKVLVYQTCVLSILLYASETLTTYAKQERRLNAYHMRCLRYILGVTWKDRMTNE-----AVLLKTNCSSITAILKQRRLRWLGHVYRMGPERLPREVLLGEIADAKRPVGRPMLRFKDSCKRDMQSFSINLDSWE 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6S7JKI9_PARCT3.390e-1629.81Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7K883_PARCT8.060e-1629.81RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT1.080e-1529.81RNA-directed DNA polymerase from mobile element jo... [more]
UPI00200FE13E3.030e-1329.61uncharacterized protein LOC125233589 n=1 Tax=Legum... [more]
A0A2W1BQA3_HELAM1.110e-1229.61C2H2-type domain-containing protein n=3 Tax=Helico... [more]
A0A8J9Z756_BRALA3.990e-1228.21Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6S7JBE9_PARCT7.280e-1231.91Reverse transcriptase domain-containing protein (F... [more]
A0A8C5PP25_9ANUR4.030e-1125.64Reverse transcriptase domain-containing protein n=... [more]
A0A7D9IPZ0_PARCT1.350e-1031.58Reverse transcriptase domain-containing protein n=... [more]
UPI00200C769B5.950e-927.56uncharacterized protein LOC125238175 n=1 Tax=Legum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9535contigH-paniculata_contig9535:7860..8345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.2
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog6500.XP_005092035.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BI15@33208,3D94V@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.0064876-CDS-H-paniculata_contig9535:7859..83451622931184.0064876-CDS-H-paniculata_contig9535:7859..8345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9535 7860..8345 +
1691481628.49737-CDS-H-paniculata_contig9535:7859..83451691481628.49737-CDS-H-paniculata_contig9535:7859..8345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9535 7860..8345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9535.17259.1prot_H-paniculata_contig9535.17259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9535 7860..8345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9535.17259.1

>prot_H-paniculata_contig9535.17259.1 ID=prot_H-paniculata_contig9535.17259.1|Name=mRNA_H-paniculata_contig9535.17259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MRRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWML
LDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEAT
VEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDD
VNDVGIPITKWE
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mRNA from alignment at H-paniculata_contig9535:7860..8345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9535.17259.1 ID=mRNA_H-paniculata_contig9535.17259.1|Name=mRNA_H-paniculata_contig9535.17259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig9535:7860..8345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACGAGGTAGAACGGCTCACCTGTGCTTCAATACACACCAACGACA AGTCTACGATTGCCCGAAAGTGCGACTTGATACCAAGCTTCGCATATTCA AGACAAACGTACTCGAGGTCTTGTTGTACACCTGCTCCACGTGGATGCTC CTCGATTCGCACTATGCCAGGTTGAGGGAGTACCATCGTGTCTCCTGCTG CGATGCCCTCGGCATCTACAGTAGGAGCGGGCCTACAAATCACAGTCTGT CCTACCGAGCCGCGCTGGAGAGGACGGGGTGCAAAATAATCGAGGCGACC GTGGAGAAGCGGCCACATCGATTCGCGGGGAACGATATGCACATAAGGGA TGAACGCCTGCCGGATGTCATGATGACCGGGGAACTCGACGGAGGAATAA GGGGCAGGGGCCAGCCTGCGAGGCAAAGACCACAATGCGTTGTCGACGAC GTCAACGACGTTGGCATCCCGATCACAAAGTGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9535:7860..8345+

>mRNA_H-paniculata_contig9535.17259.1 ID=mRNA_H-paniculata_contig9535.17259.1|Name=mRNA_H-paniculata_contig9535.17259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig9535:7860..8345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACGAGGTAGAACGGCTCACCTGTGCTTCAATACACACCAACGACA
AGTCTACGATTGCCCGAAAGTGCGACTTGATACCAAGCTTCGCATATTCA
AGACAAACGTACTCGAGGTCTTGTTGTACACCTGCTCCACGTGGATGCTC
CTCGATTCGCACTATGCCAGGTTGAGGGAGTACCATCGTGTCTCCTGCTG
CGATGCCCTCGGCATCTACAGTAGGAGCGGGCCTACAAATCACAGTCTGT
CCTACCGAGCCGCGCTGGAGAGGACGGGGTGCAAAATAATCGAGGCGACC
GTGGAGAAGCGGCCACATCGATTCGCGGGGAACGATATGCACATAAGGGA
TGAACGCCTGCCGGATGTCATGATGACCGGGGAACTCGACGGAGGAATAA
GGGGCAGGGGCCAGCCTGCGAGGCAAAGACCACAATGCGTTGTCGACGAC
GTCAACGACGTTGGCATCCCGATCACAAAGTGGGAGATGAGACGAGGTAG
AACGGCTCACCTGTGCTTCAATACACACCAACGACAAGTCTACGATTGCC
CGAAAGTGCGACTTGATACCAAGCTTCGCATATTCAAGACAAACGTACTC
GAGGTCTTGTTGTACACCTGCTCCACGTGGATGCTCCTCGATTCGCACTA
TGCCAGGTTGAGGGAGTACCATCGTGTCTCCTGCTGCGATGCCCTCGGCA
TCTACAGTAGGAGCGGGCCTACAAATCACAGTCTGTCCTACCGAGCCGCG
CTGGAGAGGACGGGGTGCAAAATAATCGAGGCGACCGTGGAGAAGCGGCC
ACATCGATTCGCGGGGAACGATATGCACATAAGGGATGAACGCCTGCCGG
ATGTCATGATGACCGGGGAACTCGACGGAGGAATAAGGGGCAGGGGCCAG
CCTGCGAGGCAAAGACCACAATGCGTTGTCGACGACGTCAACGACGTTGG
CATCCCGATCACAAAGTGGGAG
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