mRNA_H-paniculata_contig9531.17257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9531.17257.1
Unique NamemRNA_H-paniculata_contig9531.17257.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: D8LN14_ECTSI (CAF1C_H4-bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN14_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.040e-71
Identity = 158/238 (66.39%), Postives = 169/238 (71.01%), Query Frame = 3
Query:  717 VQEGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTE---LKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPATTV 1421
            ++EGFA+DWSPT EG L TGD  N V++TR  E  W TDPVPFVGHV SV         +TVFAS SADKT+AVWDLRKKNG MLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWH+                              SVEADDEA               LKDLPPQLLFIHQGQ DIKELHFHPQIPG+I+STAADGFN+FKPATTV
Sbjct:  308 MEEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVXXXXXXXXXTTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSIEWHPTDESMLAVSGADNQLTVWDLSVEADDEAXXXXXXXXXXXXXGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV 545          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A7S4D9K6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9K6_HETAK)

HSP 1 Score: 195 bits (496), Expect = 9.980e-54
Identity = 154/238 (64.71%), Postives = 176/238 (73.95%), Query Frame = 3
Query:  720 QEGFAMDWSPTTEGNLVTGDGANCVYLTRPT----ESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPATTV 1421
            QEG+A+DWSP+  G L+TGD    +Y   P      + WA D VPF GH GSVEDLQWSPTE+TVF S   D+T+ VWDLR+K G+MLS +AH  D   XXXXXXXXXXXXXXXXXXXXXXXXXX FG  EP+A F+WH   XXXXXXXXXXXXXXXXXXXXXXXX    SVEADD    +   G +     D+P QLLF+HQGQ DIKELHFH Q+PG+I+STA DGFNVFKPAT +
Sbjct:  198 QEGWALDWSPSAAGRLLTGDCGGFIYHWEPAGGGGAAGWAVDKVPFTGHQGSVEDLQWSPTEATVFMSAGVDRTVRVWDLRQKGGSMLSCEAHAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGKSEPIANFKWHTAPXXXXXXXXXXXXXXXXXXXXXXXXVWDLSVEADDAEGRARPPGAD-----DVPAQLLFVHQGQVDIKELHFHQQLPGVIMSTALDGFNVFKPATQI 430          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A024UF95_9STRA (CAF1C_H4-bd domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UF95_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.000e-53
Identity = 131/230 (56.96%), Postives = 152/230 (66.09%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWSP T G+L+TGD +  +Y       SW  D VPF GH  SVED+QWSPTE+TVFAS S+D+T+ +WD+R K  +MLS++AH++    XXXXXXXXXXXXXXXXXXXXXXXXX  F S  PVA FR+H                               SVE D EAA +T      T   D+PPQLLFIHQGQ DIKELHFHPQ PGL++STAADGFNVFKPA
Sbjct:  265 EGFAMDWSPVTAGSLLTGDCSKYIYHWVNNGGSWVVDKVPFTGHTSSVEDIQWSPTEATVFASCSSDRTVRIWDIRTKARSMLSVEAHDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFQSDSPVAHFRYHTAPVTSIEWHPTDESMLAVSGADNQISIWDMSVEEDAEAANAT------TAKLDVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 488          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A6G0XVI8_9STRA (CAF1C_H4-bd domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XVI8_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.450e-52
Identity = 131/230 (56.96%), Postives = 154/230 (66.96%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWSP T G+L+TGD +  +Y       SWA D VPF GH  SVED+QWSPTE++VFAS SADKT+ +WD+R K  +ML + AH++    XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H                               SVE D EAA +     N+++L D+PPQLLFIHQGQ DIKELHFHPQ PGL++STAADGFNVFKPA
Sbjct:  264 EGFAMDWSPVTAGSLLTGDCSKYIYHWVNNGGSWAVDKVPFTGHTASVEDIQWSPTEASVFASCSADKTVRIWDIRTKARSMLDVVAHDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFQADSPVAHFRYHTAPVTSIEWHPTDESMLAVSGADNQISIWDMSVEEDTEAAAA-----NTSKL-DVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 487          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A0P1AE81_PLAHL (Glutamate-rich wd repeat-containing protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE81_PLAHL)

HSP 1 Score: 193 bits (490), Expect = 2.640e-52
Identity = 127/230 (55.22%), Postives = 155/230 (67.39%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWSP   G LVTGD +  +YL   ++  W+ D VPFV H  SVEDLQWSPTE++VFAS S+D+++ +WD+R+K G+ML + AH++    XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H                               SVE D EAA +  G  ++ +L DLPPQLLFIHQGQ DIKELHFHPQ PG+++STA DG+NVFKPA
Sbjct:  256 EGFAMDWSPVEAGRLVTGDCSKFIYLWASSDGGWSIDKVPFVRHKSSVEDLQWSPTEASVFASCSSDRSVRIWDVRRKAGSMLDITAHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPITSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAVTVQGEKDNRKL-DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGYNVFKPA 484          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A067CUG9_SAPPC (CAF1C_H4-bd domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CUG9_SAPPC)

HSP 1 Score: 189 bits (479), Expect = 1.040e-50
Identity = 128/233 (54.94%), Postives = 149/233 (63.95%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGS---GEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWSP T G+L+TGD +  +Y      +SW  D +PF GH  SVEDLQWSP E +VFAS SADKT+ +WD+R K  +M+ + AH++D   XXXXXXXXXXXXXXXXXXXXXXXX   FGS    EP+A FR+H                               SVE D E          S+E  D+PPQLLFIHQGQ DIKELHFHPQ PGL++STAADGFNVFKPA
Sbjct:  260 EGFAMDWSPHTAGSLLTGDCSKYIYHWVNNGASWVVDKIPFTGHKASVEDLQWSPLEGSVFASCSADKTVRIWDIRTKTRSMIEVNAHDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKFGSPAKDEPIAHFRYHTAPVTSIEWHPSDESMLAVSGADNQISIWDMSVEEDTEQH-------PSSEKLDVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 485          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A484E1J0_BRELC (CAF1C_H4-bd domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1J0_BRELC)

HSP 1 Score: 186 bits (472), Expect = 9.940e-50
Identity = 128/230 (55.65%), Postives = 151/230 (65.65%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWS    G LVTGD +  +Y+   +E ++  D VPF GH  SVEDLQWSPTE++VFAS S+D+T+ +WD+R+K G+ML + AH+     XXXXXXXXXXXXXXXXXXXXXXXXXX F +  PVA FR+H                               SVE D EAA         T+L DLPPQLLFIHQGQ DIKELHFHPQ PG+++STA DGFNVFKPA
Sbjct:  254 EGFAMDWSSVQTGRLVTGDCSKFIYVWSNSEGAFNVDKVPFTGHKSSVEDLQWSPTEASVFASCSSDQTVRIWDIRRKAGSMLDVAAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFKADHPVAHFRYHTAPVTSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAKPVQSVDGETKL-DLPPQLLFIHQGQTDIKELHFHPQCPGVLISTAGDGFNVFKPA 482          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A8J4WG55_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4WG55_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.890e-49
Identity = 129/230 (56.09%), Postives = 148/230 (64.35%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWSP   G LVTGD +  +YL   +E +W  D VPF GH  SVEDLQWSPTE++VFAS S+D+T+ +WD R+K G+ML + A       XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H                               SVE D EAA    G     +L DLPPQLLFIHQGQ DIKELHFHPQ PG+++STA DGFNVFKPA
Sbjct:  512 EGFAMDWSPVQAGRLVTGDCSKFIYLWANSEGAWNVDKVPFTGHKSSVEDLQWSPTETSVFASCSSDRTVRIWDTRRKAGSMLDVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPVTSIEWHPTDESVLAVAGADNQISVWDMSVEEDAEAAVPVAGENGEAKL-DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGFNVFKPA 740          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A024GTE5_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTE5_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.970e-49
Identity = 123/231 (53.25%), Postives = 150/231 (64.94%), Query Frame = 3
Query:  720 QEGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            +EGFAMDWS  ++G+L+TGD +  +Y   P ES+W  D VPF GH  S+EDLQWSP E+TVFASGSADKT+ +WD R+K G+M+++         XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H                               SVE D +A+       +     ++PPQLLFIHQGQKDIKELHFHPQ PG+++STA DGFNVFKPA
Sbjct:  253 EEGFAMDWSLVSKGHLLTGDCSKFIYRWLPQESAWVIDKVPFSGHQSSIEDLQWSPNEATVFASGSADKTIRIWDTRRKAGSMINVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKAETPVAHFRYHTAPITSLEWHPCDESVIAVSGADNQISIWDLSVEEDVDASDFINDADSKGVQCEVPPQLLFIHQGQKDIKELHFHPQCPGVLVSTAGDGFNVFKPA 483          
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A5D6XZ36_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ36_9STRA)

HSP 1 Score: 189 bits (480), Expect = 4.450e-49
Identity = 129/230 (56.09%), Postives = 147/230 (63.91%), Query Frame = 3
Query:  723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412
            EGFAMDWSP   G LVTGD +  +Y     ES+W+ D VPF GH  SVEDLQWSPTE+TVFAS SAD+T+ +WD R+K G+ML + AHE+    XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H                               SVE D EAA       N     DLPPQLLFIHQGQ DIKELHFH Q PG+++STA+DGFNV  PA
Sbjct:  262 EGFAMDWSPVQAGKLVTGDCSKFIYAWSNAESAWSVDKVPFTGHKASVEDLQWSPTEATVFASCSADRTVRIWDTRRKAGSMLDVVAHEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKANSPVAHFRYHTAPITSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAAEVHDPENPK--VDLPPQLLFIHQGQTDIKELHFHSQCPGVLVSTASDGFNVMAPA 489          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN14_ECTSI1.040e-7166.39CAF1C_H4-bd domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4D9K6_HETAK9.980e-5464.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024UF95_9STRA2.000e-5356.96CAF1C_H4-bd domain-containing protein n=6 Tax=Apha... [more]
A0A6G0XVI8_9STRA1.450e-5256.96CAF1C_H4-bd domain-containing protein n=2 Tax=Apha... [more]
A0A0P1AE81_PLAHL2.640e-5255.22Glutamate-rich wd repeat-containing protein 1 n=1 ... [more]
A0A067CUG9_SAPPC1.040e-5054.94CAF1C_H4-bd domain-containing protein n=4 Tax=Sapr... [more]
A0A484E1J0_BRELC9.940e-5055.65CAF1C_H4-bd domain-containing protein n=1 Tax=Brem... [more]
A0A8J4WG55_9STRA1.890e-4956.09CAF1C_H4-bd domain-containing protein n=1 Tax=Phyt... [more]
A0A024GTE5_9STRA1.970e-4953.25CAF1C_H4-bd domain-containing protein n=1 Tax=Albu... [more]
A0A5D6XZ36_9STRA4.450e-4956.09CAF1C_H4-bd domain-containing protein n=1 Tax=Pyth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9531contigH-paniculata_contig9531:6590..9207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D8LN14
Preferred nameGRWD1
KEGG koko:K14848
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0022411,GO:0022607,GO:0022613,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032984,GO:0032986,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034728,GO:0042254,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051082,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837
EggNOG free text desc.chromatin disassembly
EggNOG OGsKOG0302@1,KOG0302@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons3
Model size1424
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9531.17257.1prot_H-paniculata_contig9531.17257.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9531 6590..8608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.6439283-CDS-H-paniculata_contig9531:6589..68861622931183.6439283-CDS-H-paniculata_contig9531:6589..6886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9531 6590..6886 -
1691481628.3635113-CDS-H-paniculata_contig9531:6589..68861691481628.3635113-CDS-H-paniculata_contig9531:6589..6886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9531 6590..6886 -
1622931183.661205-CDS-H-paniculata_contig9531:7332..75601622931183.661205-CDS-H-paniculata_contig9531:7332..7560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9531 7333..7560 -
1691481628.3750188-CDS-H-paniculata_contig9531:7332..75601691481628.3750188-CDS-H-paniculata_contig9531:7332..7560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9531 7333..7560 -
1622931183.6954324-CDS-H-paniculata_contig9531:8308..86081622931183.6954324-CDS-H-paniculata_contig9531:8308..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9531 8309..8608 -
1691481628.3967388-CDS-H-paniculata_contig9531:8308..86081691481628.3967388-CDS-H-paniculata_contig9531:8308..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9531 8309..8608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.7422419-UTR-H-paniculata_contig9531:8608..92071622931183.7422419-UTR-H-paniculata_contig9531:8608..9207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9531 8609..9207 -
1691481628.4088006-UTR-H-paniculata_contig9531:8608..92071691481628.4088006-UTR-H-paniculata_contig9531:8608..9207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9531 8609..9207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9531.17257.1

>prot_H-paniculata_contig9531.17257.1 ID=prot_H-paniculata_contig9531.17257.1|Name=mRNA_H-paniculata_contig9531.17257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MVLCSKQVTTLVRTVCLLCVFHISMLLFCRQYLHEYIFDVQEGFAMDWSP
TTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTEST
VFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVISWNRNVTYLLASGS
DDGSFKIWDLRAFGSGEPVAQFRWHQGPITSIEWHPTDESMLAASGADNQ
LTVWDLSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFH
PQIPGLILSTAADGFNVFKPATTV*
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mRNA from alignment at H-paniculata_contig9531:6590..9207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9531.17257.1 ID=mRNA_H-paniculata_contig9531.17257.1|Name=mRNA_H-paniculata_contig9531.17257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2618bp|location=Sequence derived from alignment at H-paniculata_contig9531:6590..9207- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGAAACTGTCGGATCTGCACAGAACGAAGAAATCGGCCGACAACGC CGACAGCGACGACGAGGAAGATTCAGAAAATGACGGAGAGGACGACACGG ATGATGACCCTACCCTTGACCACGTTAGCATCCCGCATCGCGGCGGCGTG AACCGCGTGCGCTCCATGCCGCAGCGCCCGCACGTGGTGGCCACATGGTC GGAGATGGCTGAAGTTCACATTTGGAACCTGGAGCGACAGGTGGCGGCAT TGGCGAAGGGCACCCCACGAACTTCGAAGGTGGACCCGGCGTTTACGTTC GGAGGGCACGCTGAGGCGAGTATATGATCGCAGAGATGGTACAGCGAGAG CGGCGGTGGTGCGGGGGGGGGGGGTCATCGTATGTGGTTTCGCAGTTATA ATCATTCATCTTACACACGGTCTGTCAGAACGTTGATCACGCCTCCATGA GACGATTGAGCAATTTTACCTCATGAAGTTACTGCCGATGGCCAATCGCT CGTTCCTTCTCCGCCAAAGGTTGCTCGAAAAACAACTTCTGTCCTATTTA TATCGACCCTCGATACTGAGATATCTGTATCTCCAAAGCACATTTATACA TGGTATTGTGCTCGAAACAGGTTACAACTCTCGTTAGAACAGTGTGCTTG CTTTGCGTGTTTCACATCTCAATGCTTCTCTTTTGTCGGCAATACTTGCA CGAATATATTTTTGACGTGCAGGAGGGATTCGCCATGGACTGGTCACCAA CAACGGAAGGAAACTTGGTGACCGGAGACGGTGCGAATTGCGTATACCTC ACCCGGCCGACTGAGTCGAGCTGGGCGACGGATCCAGTACCGTTTGTGGG ACACGTGGGTTCGGTAGAGGACCTGCAATGGAGCCCAACTGAGAGCACGG TAGGTACAGATCCTTTGGTGTTGTATTGGTTTGGGTGGTTTATTTTGTGT AGCTGTCCTTTTGCGATTGCGTCTACTGCATGCACAAATCGAAACAGATG GAAGTTTTAGGGTGTTTTTCGGAGAATGAGGTCGCGGAAATCGAAAAATG AAGACTTATTTGTCTTTCTTGTTTCCCCGAAAGTGATGACGGGTGCGGTA ACTCCCGTAGTCTGGTGTCGGCAATTCTTGCTTCCCACCTGCTGGAACTC TGCTACTACTAGTCTCGGCACGGCGCCAAGGATTTTCTGAACACCCACCC ATGCTATCTCGGGCAGCATGTTGTGCGGTGAGCGGCAAATAATTGTATAT TGCATGGCAAATGGAACTGCTTTTCGCGTTCGGGATTTGAGCTATCGTTC ATCAAAACTTAAATATTGCCGAGAAGGAGAGCGAGGAGTCCCAACCATGA TCTCATCGTTTTGCCTTATTTTTTTTCTCTCTTCGTTGTCTTATGTCATC TGATATTTTGTCAGGATATGTCCTCCCCAGCCATTCACACTTTTCAGTTT TCAACATGGAACATTTTAATCGTGTCACCTGTTCCCTTGATTTTGCACAG CTGTGAACGCTGCTCGTTCCCTTTCAGCAACGAGCGCTGGACGTCGACTC GTACATCACAATCCCCCCCGAAGTATACAGCTCGTTGTATCAGGTTATTT TACATACCTCTGTTTGTACGCTCCATCACCCCCGTCCTTATGGACAGGTC TTCGCGTCGGGCTCGGCGGACAAGACGCTGGCTGTGTGGGATCTGCGCAA GAAGAACGGCACGATGCTGAGCCTTAAGGCGCACGAGGAGGATGTCAACG TTATCAGCTGGAATCGAAATGTGACGTACCTCCTCGCTTCGGGCTCTGAC GACGGAAGTTTCAAGATTTGGGACCTTCGAGCGTTTGGCAGCGGAGAGCC TGTCGCGCAGTTCCGATGGCACCAGGTAAGCGGGGGATGTTGCGGTTTCC CGTGTTTTGGTGGTGGCAATGGTGGTGGTGGTACCACTGTTGCTATTGGT TGATGATGATGGTGGTGGCGTTATGGTTGTTGGTGTTGGTTCTCATGATA ATGACGGACGACGGGCGATGTTGGGAATGGTTATGGGTGATTGATGTCAT TCATGTTAATTGTTTTTCGATGTAGTTATCTTTTTTCCGTTCGACACCCA TGTTTCCAACAAGTGCACGTCCCCCGTAGGCATTCCTGTGAAAAGCGTTA GGGTCGTATCGAAATCAGCTTGTCTGGTCGGCGAAAATATTCCTCTCATG CCTTGCATGACGCCCTGAACTTAATGGAATATTGTCACAACCATCGTGAC AAATTCGTCGCTTTCATCGACCCCGTCCACACCCGGCGCCTGGGCTCCCC CTTTTACCTCCCACCTTACAGGGCCCAATTACTTCTATCGAGTGGCATCC CACAGACGAGTCTATGCTCGCAGCATCAGGCGCGGACAACCAATTGACGG TTTGGGATCTTTCCGTTGAGGCCGACGATGAGGCTGCTGGGTCAACCGGG GGCGGCGTTAACTCGACCGAGTTAAAAGACTTGCCGCCACAGCTGCTCTT CATTCACCAGGGTCAGAAAGATATTAAGGAGTTGCATTTCCACCCTCAGA TTCCAGGGCTGATTTTGAGCACCGCTGCCGATGGTTTCAACGTTTTCAAG CCAGCTACCACTGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9531:6590..9207-

>mRNA_H-paniculata_contig9531.17257.1 ID=mRNA_H-paniculata_contig9531.17257.1|Name=mRNA_H-paniculata_contig9531.17257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig9531:6590..9207- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATTGTGCTCGAAACAGGTTACAACTCTCGTTAGAACAGTGTGCTT
GCTTTGCGTGTTTCACATCTCAATGCTTCTCTTTTGTCGGCAATACTTGC
ACGAATATATTTTTGACGTGCAGGAGGGATTCGCCATGGACTGGTCACCA
ACAACGGAAGGAAACTTGGTGACCGGAGACGGTGCGAATTGCGTATACCT
CACCCGGCCGACTGAGTCGAGCTGGGCGACGGATCCAGTACCGTTTGTGG
GACACGTGGGTTCGGTAGAGGACCTGCAATGGAGCCCAACTGAGAGCACG
ATGGTATTGTGCTCGAAACAGGTTACAACTCTCGTTAGAACAGTGTGCTT
GCTTTGCGTGTTTCACATCTCAATGCTTCTCTTTTGTCGGCAATACTTGC
ACGAATATATTTTTGACGTGCAGGAGGGATTCGCCATGGACTGGTCACCA
ACAACGGAAGGAAACTTGGTGACCGGAGACGGTGCGAATTGCGTATACCT
CACCCGGCCGACTGAGTCGAGCTGGGCGACGGATCCAGTACCGTTTGTGG
GACACGTGGGTTCGGTAGAGGACCTGCAATGGAGCCCAACTGAGAGCACG
GTCTTCGCGTCGGGCTCGGCGGACAAGACGCTGGCTGTGTGGGATCTGCG
CAAGAAGAACGGCACGATGCTGAGCCTTAAGGCGCACGAGGAGGATGTCA
ACGTTATCAGCTGGAATCGAAATGTGACGTACCTCCTCGCTTCGGGCTCT
GACGACGGAAGTTTCAAGATTTGGGACCTTCGAGCGTTTGGCAGCGGAGA
GCCTGTCGCGCAGTTCCGATGGCACCAGGTCTTCGCGTCGGGCTCGGCGG
ACAAGACGCTGGCTGTGTGGGATCTGCGCAAGAAGAACGGCACGATGCTG
AGCCTTAAGGCGCACGAGGAGGATGTCAACGTTATCAGCTGGAATCGAAA
TGTGACGTACCTCCTCGCTTCGGGCTCTGACGACGGAAGTTTCAAGATTT
GGGACCTTCGAGCGTTTGGCAGCGGAGAGCCTGTCGCGCAGTTCCGATGG
CACCAGGGCCCAATTACTTCTATCGAGTGGCATCCCACAGACGAGTCTAT
GCTCGCAGCATCAGGCGCGGACAACCAATTGACGGTTTGGGATCTTTCCG
TTGAGGCCGACGATGAGGCTGCTGGGTCAACCGGGGGCGGCGTTAACTCG
ACCGAGTTAAAAGACTTGCCGCCACAGCTGCTCTTCATTCACCAGGGTCA
GAAAGATATTAAGGAGTTGCATTTCCACCCTCAGATTCCAGGGCTGATTT
TGAGCACCGCTGCCGATGGTTTCAACGTTTTCAAGCCAGCTACCACTGTA
TAAGGCCCAATTACTTCTATCGAGTGGCATCCCACAGACGAGTCTATGCT
CGCAGCATCAGGCGCGGACAACCAATTGACGGTTTGGGATCTTTCCGTTG
AGGCCGACGATGAGGCTGCTGGGTCAACCGGGGGCGGCGTTAACTCGACC
GAGTTAAAAGACTTGCCGCCACAGCTGCTCTTCATTCACCAGGGTCAGAA
AGATATTAAGGAGTTGCATTTCCACCCTCAGATTCCAGGGCTGATTTTGA
GCACCGCTGCCGATGGTTTCAACGTTTTCAAGCCAGCTACCACTGTATAA
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