mRNA_H-paniculata_contig9526.17253.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9526.17253.1
Unique NamemRNA_H-paniculata_contig9526.17253.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: D8LI29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI29_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 5.120e-86
Identity = 197/328 (60.06%), Postives = 214/328 (65.24%), Query Frame = 1
Query:    1 DAAIHNHLLALYAQEEEWRELSSTAATDSAHSRVSQPWAVGNKSSGQLGESSQELSSSLRVN-------------------------------------SASSPSALLAFIARPAEERFFDPIFKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            DAAIHNHLLALYAQEEEWRE         +H   S     G K+   + ++ Q LS +  V+                                     +AS  SALLAFIARP EERFFDPIFKREICVSLEEYNGKIE LRKEMEDYTLS+EAVQ EI EL+QRSIYVSSNQTCELC R+ILSTQFYVFPC HAFH +CLL +IRPHLS EQ SAV SL+  IA                XXXXXXX       XXXXXXXXXXXXXXX  D S+RAQHY R+LQ  LDGYVA ECVLCGD+MVQSVDKPLV  EEQ EQ  QWAL
Sbjct:  572 DAAIHNHLLALYAQEEEWRE---------SHRHPSSLSTRGYKALSGVDDAYQALSGAGSVSGSGLTKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASGSSALLAFIARPPEERFFDPIFKREICVSLEEYNGKIESLRKEMEDYTLSSEAVQTEIVELQQRSIYVSSNQTCELCKRNILSTQFYVFPCGHAFHFECLLENIRPHLSVEQRSAVESLVAMIAX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADGSRRAQHYLRSLQTELDGYVAGECVLCGDMMVQSVDKPLVAVEEQAEQMHQWAL 878          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A6H5L255_9PHAE (Vps39_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L255_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.210e-61
Identity = 131/183 (71.58%), Postives = 141/183 (77.05%), Query Frame = 1
Query:  325 MEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            MEDYTLS+EAVQAEI EL+QRSIYVSSNQTCELC R+ILSTQFYVFPC HAFHS+CLL +IRPHLS EQ SAV SL+  IAA               XXXXXXX       XXXXXXXXXXXXX    D S+RAQHY+R+LQ  LDGYVAAECVLCGD+MVQSVDKPLVT EEQ EQ  QWAL
Sbjct:    1 MEDYTLSSEAVQAEIVELQQRSIYVSSNQTCELCKRNILSTQFYVFPCGHAFHSECLLENIRPHLSVEQRSAVESLVKMIAAXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGTDGSRRAQHYRRSLQTELDGYVAAECVLCGDMMVQSVDKPLVTVEEQAEQLHQWAL 173          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.430e-35
Identity = 87/206 (42.23%), Postives = 111/206 (53.88%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNH-IRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK +IC SLE YN +I  LR EM +YT + EA QAE   L+ R +YV S Q CELCG   L+   Y+FPC+HAFH  CL +H +R +L+P+Q SAV +L+ +IAA + +        A+G                                  KRA     AL++ LDGYVAAEC LCG+ M+ SVDKPLV      E A  WAL
Sbjct:  974 FKADICASLEAYNARIGRLRAEMAEYTAAAEATQAEAAALRARELYVGSAQPCELCGAPALARALYLFPCAHAFHCDCLRDHALREYLTPQQRSAVGTLIQRIAAAEPS-------AATGAAA---------------------------AALPKRAALQLAALRSELDGYVAAECALCGEAMIDSVDKPLVEDGRAAEAAA-WAL 1144          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A5D6XVF9_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVF9_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.930e-32
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGV------SXXXXXXXXXXXXXXXDVDTSKRAQHYQRAL-QASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK+EIC SLE YN +IE L++EM+DYT S E +++++++L++R   VS NQ CEL G++IL  +FY+FPCSHAFH+  L   ++ HL+  Q   V  L+ K+           L            PLS         S                 D +K++   +R + Q  LD  +A+EC+ CG++M++S+  P +TP+++  +  +W +
Sbjct:  853 FKKEICESLEVYNDRIEQLKEEMQDYTQSAELIRSDMQKLRKRCAIVSGNQRCELTGQNILGKEFYLFPCSHAFHATALRQEMQKHLNSFQRQTVKQLIQKL---------NELSVEMPATNKFFQPLSAFAFLNLTSSEKEAMHPDGATSAQSAADAAKQSLAQEREMVQQKLDEIIASECIFCGEVMIKSIHTPFITPDDELSEGAEWKI 1055          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A4D9CQ63_9STRA (Pep3_Vps18 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ63_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.040e-31
Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTP-EEQEEQAGQWAL 873
            FK +IC SL +Y+  I+GL++EME+   ST  +++ +  L+ R + ++++Q C+LC  S+ + QFYVFPC HAFH+ CL +HI P+L+  Q  AV +L +++AA +  G    +G   G        +SQ                       K AQ    ALQ  +DGY+AAEC  CGD+M++S+DKPLV   EE + +A +W +
Sbjct: 1126 FKEKICDSLSQYSSTIQGLKQEMEELAQSTVEMESAVAALRGRHLSIANSQRCDLCRTSVFAHQFYVFPCQHAFHATCLAHHILPYLNTSQRRAVQALQEQLAA-EYFGFNEGIG---GGVRGTGGKMSQ----------------------RKAAQ--VEALQGEIDGYLAAECPFCGDVMIRSIDKPLVGEGEEAKAEAEEWEI 1303          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: D8M6Q2_BLAHO (RING-type domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6Q2_BLAHO)

HSP 1 Score: 131 bits (330), Expect = 1.100e-30
Identity = 76/205 (37.07%), Postives = 107/205 (52.20%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK  I  SLE YN +I+ L+ EME YT S E ++ EI+ LK R   +  +Q CELC ++ILS  FY+FPCSHAFH+ CLL  +  HLS  +++ +  L +K+                        PLSQ                      S+  Q  +  LQA LD  +AAEC LCG +M+QS++KP ++ EE+ E A  W++
Sbjct:  776 FKDRIVESLETYNNQIDELKGEMEAYTSSAEKIREEIQGLKSRHGEIEGDQVCELCDQAILSRVFYLFPCSHAFHADCLLREMNKHLSAAEKAKIKELQEKLR-----------------------PLSQS-------------------GLSQNDQELRDKLQAELDNIIAAECPLCGSVMIQSINKPFISKEEEAE-ASLWSI 937          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A8K1FLW4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLW4_PYTOL)

HSP 1 Score: 130 bits (328), Expect = 2.100e-30
Identity = 71/218 (32.57%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTAS--GXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRA-----------LQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK+EIC SLE YN +I+ L++EM+DYT S E ++A+++++++R   VS NQ CEL G++IL  +FYVFPCSHAFH+  L   +  HL+  Q   V  L+ K+         + L T            P S  +                +      A + + A           +Q  LD  +A+EC+ CG++M++S+  P VTP+++E +  +W +
Sbjct:  836 FKKEICESLEVYNDRIDELKEEMQDYTQSAELIRADMQKIRKRCAMVSGNQRCELTGQNILGKEFYVFPCSHAFHATALRQEMMKHLNSFQRQTVKQLVQKL---------QELSTMEVPTTTSFFQRPFSAALPFLNLSSSEKDAMQALNGGDGANAPNPKEAAKQTLAQEREMVQQKLDEIIASECIFCGEVMIKSIHSPFVTPDDEEAEGSEWKI 1044          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A484DZP8_BRELC (Pep3_Vps18 domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DZP8_BRELC)

HSP 1 Score: 130 bits (327), Expect = 2.860e-30
Identity = 68/209 (32.54%), Postives = 111/209 (53.11%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQG----VSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK+EIC SLE YN +IE L++EM+DYT S E ++ ++++L++R   VS NQ CEL G++IL  +FYVFPCSHAFH+  L   ++ HL+  Q   V  L+ K+    +    R               LS      ++               +    +     +  +Q  LD  +A+EC+ CG++M++S+  P +TPE++  +  +W +
Sbjct:  851 FKKEICESLEIYNDRIEQLKEEMQDYTQSAELIRTDMQKLRKRCAVVSGNQRCELTGQNILGKEFYVFPCSHAFHAGALRQEMQKHLNSFQRQTVKQLIQKLTELSTEMPTRTNFFHRPLSTFPFLNLSSSEKEVMTPGIDGASVAATAKAKNAAKEQSIAQEREMVQQKLDEIIASECIFCGEVMIKSIHSPFITPEDEANEGSEWTI 1059          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A8H7BVL9_9FUNG (Pep3_Vps18 domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BVL9_9FUNG)

HSP 1 Score: 130 bits (326), Expect = 4.040e-30
Identity = 76/205 (37.07%), Postives = 116/205 (56.59%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK EIC +LEEYN +IE L+ EM++ T S ++++ +I ELK R   V++ + C +C RS+L+ QFY+FPC H FH+ CL+N I  +L   Q   ++SL ++++   +A G  +  +A+          + GV                   T +R Q     LQ  LD  VA+EC LCGD+MV+SVD+P +T EE + +   WA+
Sbjct: 1074 FKDEICSALEEYNIRIEDLKTEMDEATKSADSIRLDIRELKSRFALVNAVEKCYVCNRSLLTRQFYIFPCQHVFHADCLINQITKYLPSRQIRLLASLQEQLSREKAARGRTSPASATATRLMS---AAAGV-----IFPADAAGNHESTFTVERLQ----TLQDELDDIVASECALCGDVMVKSVDQPFITDEEADVETS-WAI 1265          
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Match: A0A1Y1Y992_9FUNG (Pep3_Vps18 domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y992_9FUNG)

HSP 1 Score: 127 bits (320), Expect = 2.390e-29
Identity = 73/205 (35.61%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  259 FKREICVSLEEYNGKIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQFYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNLGTASGXXXXXXXPLSQGVSXXXXXXXXXXXXXXXDVDTSKRAQHYQRALQASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL 873
            FK EIC +LEEYN  IE L+ EM++ T + E ++ +I+ELK R   VS N+ C LC + +L+ QFY+FPC HAFH+ CL+N ++ +L+P Q   +  L ++IA        R+L                                   +D++   +     L+  LD  VAAEC LCGD+M++S+D P +  +EQEE A  W +
Sbjct:  844 FKEEICSALEEYNIHIEDLKGEMDEATRNAENIRQDIKELKNRFAIVSLNENCSLCDQPVLTRQFYIFPCQHAFHADCLINKVKQYLNPRQIRLLQELQEEIA--------RDL--------------------TIQRRAGKNNQAAEKMDSATNLEQ----LKEELDDLVAAECYLCGDLMIKSIDLPFIQQDEQEELAS-WTV 1015          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9526.17253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI29_ECTSI5.120e-8660.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L255_9PHAE2.210e-6171.58Vps39_2 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CAW5_9STRA1.430e-3542.23Pep3_Vps18 domain-containing protein n=1 Tax=Tribo... [more]
A0A5D6XVF9_9STRA9.930e-3233.49Pep3_Vps18 domain-containing protein n=1 Tax=Pythi... [more]
A0A4D9CQ63_9STRA1.040e-3137.38Pep3_Vps18 domain-containing protein n=2 Tax=Monod... [more]
D8M6Q2_BLAHO1.100e-3037.07RING-type domain-containing protein n=1 Tax=Blasto... [more]
A0A8K1FLW4_PYTOL2.100e-3032.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DZP8_BRELC2.860e-3032.54Pep3_Vps18 domain-containing protein n=13 Tax=Pero... [more]
A0A8H7BVL9_9FUNG4.040e-3037.07Pep3_Vps18 domain-containing protein n=1 Tax=Apoph... [more]
A0A1Y1Y992_9FUNG2.390e-2935.61Pep3_Vps18 domain-containing protein n=1 Tax=Basid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9526contigH-paniculata_contig9526:2158..5837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.9
Seed ortholog evalue2.7e-75
Seed eggNOG ortholog2880.D8LI29
Preferred nameVPS18
KEGG koko:K20181
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090087,GO:0090130,GO:0090132,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.notochord cell vacuolation
EggNOG OGsKOG2034@1,KOG2034@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size876
Cds size876
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9526.17253.1prot_H-paniculata_contig9526.17253.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9526 2158..5837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.035124-CDS-H-paniculata_contig9526:2157..24141622931183.035124-CDS-H-paniculata_contig9526:2157..2414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 2158..2414 +
1691481628.0826643-CDS-H-paniculata_contig9526:2157..24141691481628.0826643-CDS-H-paniculata_contig9526:2157..2414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 2158..2414 +
1622931183.0494292-CDS-H-paniculata_contig9526:4079..41821622931183.0494292-CDS-H-paniculata_contig9526:4079..4182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 4080..4182 +
1691481628.0953164-CDS-H-paniculata_contig9526:4079..41821691481628.0953164-CDS-H-paniculata_contig9526:4079..4182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 4080..4182 +
1622931183.0707285-CDS-H-paniculata_contig9526:4672..47621622931183.0707285-CDS-H-paniculata_contig9526:4672..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 4673..4762 +
1691481628.1057749-CDS-H-paniculata_contig9526:4672..47621691481628.1057749-CDS-H-paniculata_contig9526:4672..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 4673..4762 +
1622931183.086427-CDS-H-paniculata_contig9526:5209..55151622931183.086427-CDS-H-paniculata_contig9526:5209..5515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 5210..5515 +
1691481628.1155968-CDS-H-paniculata_contig9526:5209..55151691481628.1155968-CDS-H-paniculata_contig9526:5209..5515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 5210..5515 +
1622931183.100807-CDS-H-paniculata_contig9526:5717..58371622931183.100807-CDS-H-paniculata_contig9526:5717..5837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 5718..5837 +
1691481628.1300786-CDS-H-paniculata_contig9526:5717..58371691481628.1300786-CDS-H-paniculata_contig9526:5717..5837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9526 5718..5837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9526.17253.1

>prot_H-paniculata_contig9526.17253.1 ID=prot_H-paniculata_contig9526.17253.1|Name=mRNA_H-paniculata_contig9526.17253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp
DAAIHNHLLALYAQEEEWRELSSTAATDSAHSRVSQPWAVGNKSSGQLGE
SSQELSSSLRVNSASSPSALLAFIARPAEERFFDPIFKREICVSLEEYNG
KIEGLRKEMEDYTLSTEAVQAEIEELKQRSIYVSSNQTCELCGRSILSTQ
FYVFPCSHAFHSQCLLNHIRPHLSPEQESAVSSLLDKIAAGDSAGGGRNL
GTASGAGTGVGRPLSQGVSASGRGTGPGSGSGGGDVDTSKRAQHYQRALQ
ASLDGYVAAECVLCGDIMVQSVDKPLVTPEEQEEQAGQWAL*
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mRNA from alignment at H-paniculata_contig9526:2158..5837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9526.17253.1 ID=mRNA_H-paniculata_contig9526.17253.1|Name=mRNA_H-paniculata_contig9526.17253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3680bp|location=Sequence derived from alignment at H-paniculata_contig9526:2158..5837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCGGCCATCCACAACCATCTTCTCGCACTGTACGCTCAAGAAGAGGA GTGGCGAGAACTCTCATCGACCGCCGCCACCGATTCCGCCCACTCGCGAG TATCCCAGCCTTGGGCCGTGGGAAACAAATCCTCCGGGCAACTGGGAGAA AGTTCCCAAGAACTATCTTCTTCTTTGCGGGTCAATTCGGCGTCGTCTCC TTCGGCGTTGCTGGCATTTATCGCGCGCCCCGCGGAGGAACGGTTCTTCG ATCCGATGTACGCGTTGAGGCTGTGCTCCCAGCATGGGCGATCTCTGGCG TGCGTGCGGCTGTACTCGGCGATGGGACTTTGGGAAGAGGCAGTTGACCT CGCGCTCACCGGTGAGGACGGGGGGAAGGGAAGGAAAGGGCGAGGGGGGT ACTATATGGCGTTTTCACGTACCGTAGAGGCATTGAAGGGGACAGTGCGT GGAAGCATTTCGGACGCACCCGAATCTCGACTTTTTTACCCTCCTCTGTC AAGCCGGGATTTGAACCACATTTTTTTTTTTGTCTTATTTCCAGTTGCAA CTCGACATTCTCGTTTTTCTTCATTATTGGGGACGAGGGGAGGGGGAGAA TTTTTAGGAATCCCTGTGACGTGACGTGTACTATGGCGCCTCCGTAACAG TGGGTTTCCTGTGTAATGTGATGTATTTCGGACAAGAGGATTACCGACGG GAGATTACCCGAGCTTAACAGGCATTTCAAAACGTCCGTGTTTTTGCTAA AGTCTGTCGATAAGGCGTGCATTGAATGCTTGGCTCCGTTTTGGCTCTTT GAGCATTTGTTGAGAGACGTAGACGGAGAGAGTTGTTGGTGAGGGGGACG CTGACGGGGGCGGCATACATTGTCATCATAAATGAGAGAGCCCAGTCGAC CCACCCGTTCCGTACGACGAGGTCCTGGCATCAGTTGAAAACTTTCACCA CCTATCGATGTTTTTCTGTTTTTTGAGAAGCATGTTGACCTTTTTTCGCG CAATGGCCGATGAACACGAATCGGTGGCTACAAATAGCGTGGGTGAGCAT TGTTTTTCCCTGCGCTCTTTGAAAATACTCGACACGCACTTCCTGCGTTG CGAGCAGCTAGCTTGTTGTGGCGTCCCTCGAAGCCCTAATAATCGTACAA GATTCGAGTAACTACACAGTCACGCGCGCGAAATTACGGCATGTGCTCTC GAAATCACTCCGCCTGCACATTAGTGGACGAGACAAATCTTTGCTCTTCT GGAGTGAATCCTCTGTTCAATCCTGGGCGTGTGTTTCCCTGCAACAGTGG ACACTGACATGGCAAAGACCAACGCGGATAAGGCACCGGACCCCGAGACG CGGAAGTTGCTGTGGCTCAAGATCGCCAGGCGAGAGGTGGAGCGGTGCCG ATCGGCCGATATCGAGGATACCATGCGAGTACTGCAGGCAAGTGCTTATA TGCCTGCGCCCAGGGCTGTCGCGTAGTTAGTGCTATCATTTGATAAACAA ATCGACAACGCAAACCTGGCATGATTGGCGTGACCGTTTGGTAAGAGGAA AATGGCAACGTAAACCTGGCATGACATGACTGTTTTGATGAAAAATATGA GCTGTATCCTAATGGTCTTTTGACAAGAAGTTACGTTCCATCACGCTGCA ATTCGGCACTTTTATCATCGAACATTTTTTAGCTCTTGGATAGCAGGTCT GGGTAGTACGCCCCGCCCGCTCTCTTCCCTCCTGCTTCTCTCCGTTCTAT CACAGACGCAAGGTCGGTGGTCTCACTGAGAAGGCGTGCGAAAAACATGA CTATCGCCTTTGCCCCCTCCCGCTCCTTGCGCTTCGCGCTACTCATTTCG CCTCCAGGAGTGTGACTTGCTTAAGATCGAGGACATCTTGCCGTTTTTCC CGGACTTTGTGGTGATCGACAGCTTCAAGAGGGAGATTTGCGTGTCGCTT GAGGAGTACAATGGAAAAATCGAGGGCCTTCGGAAGGAGATGGAGGACTA CACTCTTAGCACCGAGGCAGTACAGGTAGGTTGTGGAGCTGATTTTTTTT TTATATGGTGGGGAATAGCGTCCATTTTATCCACCTACAACAGCCACCCT CCCCTGTATTCGACGTTTTTGAAGAATTACGTCGGGGACATTTGTGGCGT GTTTTGCGTCTGTTTTGGTTATAAAATCCTCGAGACGCAATTGCACGCTC TTAGCTCACCCTTGACGTGACGACGTGGCTGGGCAGTTGCTATGGGAACC ACAGAAGGAGGGTGTTGTGCGGACGGCGGGGGGTATTGGGCATGCCTTAT ATGGGGGAAATAAGTGTGCTGTTTGCACGTTGGGCTGGCACTCTTATCAA GTTTGAGCCTACAATTAGTCCTGACGACTCCAATGTTGGAGTGCTCAAAG TGTACAGAAAGCAGCTGGCGAGCTGCTCTCTGTACGATGGCTTCCGCCGA GACGCATGAAACGGCCATTTTCGCACCCCGCCTGGCCAATGTGATGTCAA TCGCCGTCGTCTCAGGCGGAGATCGAGGAGCTGAAACAACGGAGTATTTA CGTCTCCTCCAATCAGACGTGCGAGCTCTGTGGACGAAGTATCCTCAGCA CGCAGGTAGGTACAGCGCGAATGGTGATGCGAGTGTTTCCTTTGTGCTCC GTTGCTCCTTTAGTTGTTGTGCTGGATGTGCCAAGTCCGTTTTCACTCTT CGCGCGGAAGTATCACATAACAGTCTCCTTGACTTGGTTTCAGCAACGGT TTTTTTACCGTGTCACACTTTTAATCGCATACGATTGTATGCTTCTCGTC TACCGCTCTCCCCCTTGCACCACCGTGGGCAATGTTGGGCCTGTTTAACG GAACGTATTTTGAAACACGGTCTTGCCCAACGAGCATAGCTCTGTTCTCT TCTGGCGGCAACGCACGGTCAGCCTCAAATCTGATTGCCGGTCAGATCAC ACATCCATATGTGTCCCCGTGCACTGACTGTCTAACCCTCTCTTTTTCGC CTTTCCGGACTAATCCCGCGCTGATTTTTTTTTTTCTTGACCTCGACGTA AGTTTTACGTCTTCCCTTGCAGTCATGCCTTCCACTCCCAGTGCCTCTTG AATCATATCCGTCCGCACCTGTCACCGGAGCAAGAGTCAGCTGTATCATC GCTATTGGATAAAATTGCCGCCGGAGATTCTGCTGGCGGGGGACGGAATC TGGGGACGGCTAGCGGCGCCGGTACTGGTGTTGGAAGACCTTTGAGCCAA GGAGTCTCGGCTTCGGGGCGAGGGACGGGCCCAGGCAGTGGTAGTGGTGG CGGTGATGTGGACACGTCTAAGAGGGCTCAGCACTACCAACGAGCCTTGC AGGCGAGTGTAATGACGGCGTTGTTGCCGGCGGAGGAGTTTGTGAAGTAG TCCTTTTGCGAACGGAAGGTGGTTAACAACGTGCGACAACCACCATCACC ACAGATCATCACCGCCACTACCACAGCTCACCATTGCCATCATGTGAAGC TTTTGATGATGCCAATGTGTCTAGCTGTTGGTTGGTGCCTTTGTGTGTTT CCAGGCGGAGCTCGACGGGTATGTCGCGGCCGAGTGCGTGCTGTGCGGGG ACATCATGGTGCAGAGCGTGGACAAGCCCTTGGTAACGCCGGAGGAGCAG GAGGAACAGGCCGGGCAGTGGGCCTTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9526:2158..5837+

>mRNA_H-paniculata_contig9526.17253.1 ID=mRNA_H-paniculata_contig9526.17253.1|Name=mRNA_H-paniculata_contig9526.17253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig9526:2158..5837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCGGCCATCCACAACCATCTTCTCGCACTGTACGCTCAAGAAGAGGA
GTGGCGAGAACTCTCATCGACCGCCGCCACCGATTCCGCCCACTCGCGAG
TATCCCAGCCTTGGGCCGTGGGAAACAAATCCTCCGGGCAACTGGGAGAA
AGTTCCCAAGAACTATCTTCTTCTTTGCGGGTCAATTCGGCGTCGTCTCC
TTCGGCGTTGCTGGCATTTATCGCGCGCCCCGCGGAGGAACGGTTCTTCG
ATCCGATGATGCGGCCATCCACAACCATCTTCTCGCACTGTACGCTCAAG
AAGAGGAGTGGCGAGAACTCTCATCGACCGCCGCCACCGATTCCGCCCAC
TCGCGAGTATCCCAGCCTTGGGCCGTGGGAAACAAATCCTCCGGGCAACT
GGGAGAAAGTTCCCAAGAACTATCTTCTTCTTTGCGGGTCAATTCGGCGT
CGTCTCCTTCGGCGTTGCTGGCATTTATCGCGCGCCCCGCGGAGGAACGG
TTCTTCGATCCGATCTTCAAGAGGGAGATTTGCGTGTCGCTTGAGGAGTA
CAATGGAAAAATCGAGGGCCTTCGGAAGGAGATGGAGGACTACACTCTTA
GCACCGAGGCAGTACAGCTTCAAGAGGGAGATTTGCGTGTCGCTTGAGGA
GTACAATGGAAAAATCGAGGGCCTTCGGAAGGAGATGGAGGACTACACTC
TTAGCACCGAGGCAGTACAGGCGGAGATCGAGGAGCTGAAACAACGGAGT
ATTTACGTCTCCTCCAATCAGACGTGCGAGCTCTGTGGACGAAGTATCCT
CAGCACGCAGGCGGAGATCGAGGAGCTGAAACAACGGAGTATTTACGTCT
CCTCCAATCAGACGTGCGAGCTCTGTGGACGAAGTATCCTCAGCACGCAG
TTTTACGTCTTCCCTTGCAGTCATGCCTTCCACTCCCAGTGCCTCTTGAA
TCATATCCGTCCGCACCTGTCACCGGAGCAAGAGTCAGCTGTATCATCGC
TATTGGATAAAATTGCCGCCGGAGATTCTGCTGGCGGGGGACGGAATCTG
GGGACGGCTAGCGGCGCCGGTACTGGTGTTGGAAGACCTTTGAGCCAAGG
AGTCTCGGCTTCGGGGCGAGGGACGGGCCCAGGCAGTGGTAGTGGTGGCG
GTGATGTGGACACGTCTAAGAGGGCTCAGCACTACCAACGAGCCTTGCAG
GCGAGTTTTTACGTCTTCCCTTGCAGTCATGCCTTCCACTCCCAGTGCCT
CTTGAATCATATCCGTCCGCACCTGTCACCGGAGCAAGAGTCAGCTGTAT
CATCGCTATTGGATAAAATTGCCGCCGGAGATTCTGCTGGCGGGGGACGG
AATCTGGGGACGGCTAGCGGCGCCGGTACTGGTGTTGGAAGACCTTTGAG
CCAAGGAGTCTCGGCTTCGGGGCGAGGGACGGGCCCAGGCAGTGGTAGTG
GTGGCGGTGATGTGGACACGTCTAAGAGGGCTCAGCACTACCAACGAGCC
TTGCAGGCGAGTCTCGACGGGTATGTCGCGGCCGAGTGCGTGCTGTGCGG
GGACATCATGGTGCAGAGCGTGGACAAGCCCTTGGTAACGCCGGAGGAGC
AGGAGGAACAGGCCGGGCAGTGGGCCTTGTAACTCGACGGGTATGTCGCG
GCCGAGTGCGTGCTGTGCGGGGACATCATGGTGCAGAGCGTGGACAAGCC
CTTGGTAACGCCGGAGGAGCAGGAGGAACAGGCCGGGCAGTGGGCCTTGT
AA
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