mRNA_H-paniculata_contig9516.17248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9516.17248.1
Unique NamemRNA_H-paniculata_contig9516.17248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: D7G8T6_ECTSI (UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T6_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 8.030e-129
Identity = 194/218 (88.99%), Postives = 203/218 (93.12%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEERKRA 1874
            T +VYGDAQESPQTESYWGNVNC GVRACYDEGKRVAETL FDFHRQHKI VRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFC+VDDLI+GLVRLMNN+TEIGPMNIGNP EFTIKQLAEMT+RLT+S SKI++KPLPQDDPKQRRP+I FAK ALDWEP V LEEGL KTIEYF  LDMRNFKKPTTHDAHKNSE E KRA
Sbjct:   42 TSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRA 259          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7R9YP38_DIALT (UDP-glucuronate decarboxylase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YP38_DIALT)

HSP 1 Score: 333 bits (854), Expect = 7.060e-102
Identity = 156/224 (69.64%), Postives = 188/224 (83.93%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEERKRAESRATA 1892
            T +VYGD   +PQ ESYWG+VNCTGVR+CYDEGKR AETLCFD+HRQ+++ VRV RIFNT+GPGMHPYDGRVVSNFI+QAL+G+DITIYGDG QTRSFC+VDDL+DG+VR MN +  IGP+N+GNP EFTIKQLAE TI+LT S SK++ +PLP DDPKQRRP+I  A++ L WEP V L+EGL+KTI+YF ++DMR FKKPT HDAH NS  + K A+ R  A
Sbjct:  137 TSEVYGDPNITPQPESYWGHVNCTGVRSCYDEGKRCAETLCFDYHRQNQVDVRVIRIFNTYGPGMHPYDGRVVSNFIVQALNGQDITIYGDGSQTRSFCFVDDLVDGIVRFMNQDECIGPVNLGNPHEFTIKQLAERTIQLTGSKSKLINEPLPHDDPKQRRPDITLARELLKWEPKVQLDEGLQKTIDYFAHVDMRTFKKPTQHDAHTNSRVDEKDAKKRKVA 360          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S0EJQ0_9EUKA (UDP-glucuronate decarboxylase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EJQ0_9EUKA)

HSP 1 Score: 319 bits (817), Expect = 1.530e-96
Identity = 154/258 (59.69%), Postives = 186/258 (72.09%), Query Frame = 3
Query: 1137 NEKCDTVPTHA*Y*YRP------------------QHVLIFV*FSPTPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856
            N  C   P H  Y Y P                  + V   +  + T +VYGD + SPQ E YWG+VNCTGVR+CYDEGKR AETLCFD+HRQ+ + +R+ARIFNT+GPGMHPYDGRVVSNFI+QA+ GEDIT+YG+G QTR+FCYVDDL+DGL+RLMN E  IGP+NIGNP EFTIKQLAE+ +    S SKI++ PLP DDPKQR+P+I  A+K L WEP VPLE+GL   I YFR LD+  FKKPT H AH N++
Sbjct:   92 NMACPASPVH--YQYNPVKTMKTSVMGMMNMLGLAKRVKARILQASTSEVYGDPEISPQPEEYWGHVNCTGVRSCYDEGKRAAETLCFDYHRQNGVDIRIARIFNTYGPGMHPYDGRVVSNFIVQAIKGEDITVYGEGQQTRAFCYVDDLVDGLIRLMNQEHTIGPVNIGNPGEFTIKQLAELCVEKVGSKSKIIYLPLPGDDPKQRKPDITKARKYLQWEPKVPLEKGLDFAITYFRELDLGRFKKPTKHTAHLNTD 347          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A835YJC7_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC7_9STRA)

HSP 1 Score: 318 bits (816), Expect = 5.580e-96
Identity = 150/212 (70.75%), Postives = 180/212 (84.91%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856
            T +VYGDAQ++PQTE YWGNVN  GVRACYDEGKRVAETL  D+HRQH + +RVARIFNT+GP MHPYDGRVVSNFIMQAL+ +DITIYG G QTRSFC+VDDL+DGL+RLM+++  I P+N+GNP EFTI +LA++ I+L  S S+I+ KPLPQDDPKQR+P+I  A +ALDW+P   LEEGL+ TIEYFR+LDMR FKKPT H+AH NSE
Sbjct:  152 TSEVYGDAQQTPQTEQYWGNVNPIGVRACYDEGKRVAETLFLDYHRQHSVQIRVARIFNTYGPSMHPYDGRVVSNFIMQALANDDITIYGSGTQTRSFCFVDDLVDGLLRLMDSDM-ITPVNLGNPNEFTILELAQLIIKLAGSKSRIINKPLPQDDPKQRKPDITVAMRALDWQPRTQLEEGLRATIEYFRHLDMRKFKKPTEHNAHANSE 362          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A2R5FZD8_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZD8_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.430e-95
Identity = 149/213 (69.95%), Postives = 175/213 (82.16%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKAL-DWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856
            T +VYGD   SPQ E YWG+VN  GVR+CYDEGKR AETL FD++RQ+ + +RV RIFNTFGPGMHPYDGRVVSNFIMQAL G DITIYGDG QTRSFC+VDDLI+G+VR MN E  +GP+N+GNP EFTIK+LAE+ + LT S+SKI++ PLP DDPKQRRP+I  AKK L +WEP V L +GL+KTIEYF+NLDMR +K PT H AH NSE
Sbjct:  126 TSEVYGDPNVSPQPEEYWGHVNPNGVRSCYDEGKRAAETLFFDYYRQNNVDIRVLRIFNTFGPGMHPYDGRVVSNFIMQALQGRDITIYGDGSQTRSFCFVDDLIEGMVRFMNQEETVGPVNLGNPCEFTIKELAELVVELTGSTSKIIYMPLPNDDPKQRRPDITKAKKYLQNWEPQVQLRDGLQKTIEYFKNLDMRRYKDPTKHTAHANSE 338          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S3TJE7_9SPIT (UDP-glucuronate decarboxylase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TJE7_9SPIT)

HSP 1 Score: 314 bits (805), Expect = 4.310e-95
Identity = 146/214 (68.22%), Postives = 175/214 (81.78%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEE 1862
            T ++YGD + SPQ E YWG+VN  GVR+CYDEGKRV+ETLCFD+ R + + +RVARIFNT+GPGMHPYDGRVV+NFIMQAL+GEDITIYGDG QTRSF YVDD ++GL+RLM  +   GP+NIGNP EFT+KQLAE+ I L  S SKI++ PLP DDPKQRRP+I  AKK LDWEP + L EGL KTIEYFR LD+R +KKPT H AH+ +EE+
Sbjct:  120 TSEIYGDPEISPQPEEYWGSVNTIGVRSCYDEGKRVSETLCFDYQRMNNVEIRVARIFNTYGPGMHPYDGRVVTNFIMQALAGEDITIYGDGSQTRSFAYVDDTVEGLLRLMFQDQTTGPINIGNPNEFTVKQLAEIVIELVGSKSKIIYLPLPGDDPKQRRPDITKAKKYLDWEPKIQLREGLTKTIEYFRALDLRKYKKPTPHTAHRTTEED 333          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S3BWP6_9EUKA (UDP-glucuronate decarboxylase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BWP6_9EUKA)

HSP 1 Score: 314 bits (805), Expect = 1.300e-94
Identity = 152/265 (57.36%), Postives = 190/265 (71.70%), Query Frame = 3
Query: 1137 NEKCDTVPTHA*Y*YRP------------------QHVLIFV*FSPTPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIR------LTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEE 1859
            N  C   P H  Y Y P                  + V   +  + T +VYGD + SPQ E YWG+VNC GVR+CYDEGKR AETLCFD+HRQ+ + +RVARIFNT+GPGMHPYDGRVVSNF++QA++GEDIT+YG+G QTR+FC+VDDL+DGL+RLMN +  IGP+NIGNP EFTIKQLAE+ I+      +T   SKI++ PLP DDPKQR+P+I  AKK L WEP +PLE+G+ K  EYF +LD+  FKKPT H AH N+E+
Sbjct:  100 NMACPASPVH--YQYNPVKTMKTSVVGALNMLGLAKRVKARILQASTSEVYGDPKISPQPEEYWGHVNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFLVQAINGEDITVYGEGEQTRAFCFVDDLVDGLIRLMNQDVTIGPINIGNPGEFTIKQLAELAIKTVGVSKVTGKQSKIIYLPLPGDDPKQRKPDITKAKKYLGWEPKIPLEQGIVKAAEYFSSLDLSRFKKPTKHTAHLNTEQ 362          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: R1E5N3_EMIHU (UDP-glucuronate decarboxylase n=4 Tax=Eukaryota TaxID=2759 RepID=R1E5N3_EMIHU)

HSP 1 Score: 313 bits (801), Expect = 2.260e-94
Identity = 143/212 (67.45%), Postives = 176/212 (83.02%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856
            T +VYGD + SPQ E YWG VNC GVR+CYDEGKR AETLCFD+HRQ+ + +RVARIFNT+GPGMHPYDGRVVSNFIMQA++GEDIT+YG+G QTRSFC+VDDL+DGL++LMN  + IGP+NIGNP EFTIKQLAE+ I+ T SSSKIV  PLP DDP+QR+P+I  A++ L WEP + LE+GL K + YF +LD+  F+KPT H AH N++
Sbjct:  126 TSEVYGDPEVSPQPEEYWGKVNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFIMQAINGEDITVYGEGKQTRSFCFVDDLVDGLMKLMNQTSTIGPVNIGNPGEFTIKQLAELAIKHTGSSSKIVHLPLPGDDPQQRKPDITKAREILGWEPKIKLEDGLPKAVAYFSSLDLSRFRKPTKHTAHLNTD 337          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A812KMB4_9DINO (UDP-glucuronate decarboxylase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KMB4_9DINO)

HSP 1 Score: 311 bits (796), Expect = 3.530e-94
Identity = 144/208 (69.23%), Postives = 172/208 (82.69%), Query Frame = 3
Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAH 1844
            T ++YGD + +PQ+E YWG+VN  GVR+CYDEGKRV ETL FD+ R + + +RVARIFNT+GPGMHPYDGRVVSNFI+QAL  EDITIYGDG QTRSF +VDD +DGL+RLMN E  IGP+NIGNP EFT+K+LAEM I LT S SKIV+ PLP DDPKQRRPNI+ AK+ LDWEP V L EGL+KTI+YF+ LD+R + KPT+H AH
Sbjct:   87 TSEIYGDPEVTPQSEDYWGHVNTIGVRSCYDEGKRVTETLAFDYLRMNNVDIRVARIFNTYGPGMHPYDGRVVSNFILQALHNEDITIYGDGSQTRSFGFVDDTVDGLIRLMNQEKTIGPINIGNPNEFTVKELAEMVIELTGSQSKIVYLPLPGDDPKQRRPNIQRAKELLDWEPKVQLREGLQKTIDYFKALDLRKYSKPTSHTAH 294          
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S3I590_9SPIT (UDP-glucuronate decarboxylase n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I590_9SPIT)

HSP 1 Score: 303 bits (775), Expect = 9.370e-93
Identity = 144/202 (71.29%), Postives = 170/202 (84.16%), Query Frame = 3
Query: 1281 VNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEERKRAESRA 1886
            VNC GVR+CYDEGKR AETLCFD+HRQ+ + +RVARIFNT+GPGMHPYDGRVVSNFIMQA+SGEDIT+YG+G QTRSFCYVDDLIDGL+RLMN E  IGP+NIGNP EFTIKQLAE+ I+ T S SKI+  PLP DDP+QR+P+I  AKK L WEP VPLEEGL K I+YFR+LD+  F+KPT H AH N+EE+  + + +A
Sbjct:    2 VNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFIMQAISGEDITVYGEGKQTRSFCYVDDLIDGLMRLMNQEETIGPVNIGNPGEFTIKQLAELAIKYTGSKSKIINLPLPGDDPQQRKPDITKAKKYLKWEPKVPLEEGLPKAIDYFRSLDLSRFRKPTKHTAHLNTEEDHAKRQRKA 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8T6_ECTSI8.030e-12988.99UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus s... [more]
A0A7R9YP38_DIALT7.060e-10269.64UDP-glucuronate decarboxylase n=2 Tax=Diacronema l... [more]
A0A7S0EJQ0_9EUKA1.530e-9659.69UDP-glucuronate decarboxylase n=1 Tax=Phaeocystis ... [more]
A0A835YJC7_9STRA5.580e-9670.75UDP-glucuronate decarboxylase n=1 Tax=Tribonema mi... [more]
A0A2R5FZD8_9STRA1.430e-9569.95UDP-glucuronate decarboxylase n=1 Tax=Hondaea ferm... [more]
A0A7S3TJE7_9SPIT4.310e-9568.22UDP-glucuronate decarboxylase n=1 Tax=Strombidinop... [more]
A0A7S3BWP6_9EUKA1.300e-9457.36UDP-glucuronate decarboxylase n=1 Tax=Haptolina er... [more]
R1E5N3_EMIHU2.260e-9467.45UDP-glucuronate decarboxylase n=4 Tax=Eukaryota Ta... [more]
A0A812KMB4_9DINO3.530e-9469.23UDP-glucuronate decarboxylase n=1 Tax=Symbiodinium... [more]
A0A7S3I590_9SPIT9.370e-9371.29UDP-glucuronate decarboxylase n=1 Tax=Favella ehre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9516contigH-paniculata_contig9516:3237..8119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue2.7e-72
Seed eggNOG ortholog2880.D7G8T6
KEGG rclassRC00402,RC00508
KEGG koko:K01710,ko:K08678
KEGG ReactionR01384,R06513
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130
KEGG ModuleM00361,M00793
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_002350.1
EC4.1.1.35,4.2.1.46
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons6
Model size3081
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9516.17248.1prot_H-paniculata_contig9516.17248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9516 4402..6112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931182.4094262-UTR-H-paniculata_contig9516:3236..44011622931182.4094262-UTR-H-paniculata_contig9516:3236..4401Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9516 3237..4401 -
1691481627.776402-UTR-H-paniculata_contig9516:3236..44011691481627.776402-UTR-H-paniculata_contig9516:3236..4401Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9516 3237..4401 -
1622931182.5259664-UTR-H-paniculata_contig9516:6112..62311622931182.5259664-UTR-H-paniculata_contig9516:6112..6231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9516 6113..6231 -
1691481627.8503385-UTR-H-paniculata_contig9516:6112..62311691481627.8503385-UTR-H-paniculata_contig9516:6112..6231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9516 6113..6231 -
1622931182.538281-UTR-H-paniculata_contig9516:6826..81191622931182.538281-UTR-H-paniculata_contig9516:6826..8119Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9516 6827..8119 -
1691481627.860819-UTR-H-paniculata_contig9516:6826..81191691481627.860819-UTR-H-paniculata_contig9516:6826..8119Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9516 6827..8119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931182.4291584-CDS-H-paniculata_contig9516:4401..45221622931182.4291584-CDS-H-paniculata_contig9516:4401..4522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 4402..4522 -
1691481627.7955775-CDS-H-paniculata_contig9516:4401..45221691481627.7955775-CDS-H-paniculata_contig9516:4401..4522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 4402..4522 -
1622931182.447925-CDS-H-paniculata_contig9516:4803..49131622931182.447925-CDS-H-paniculata_contig9516:4803..4913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 4804..4913 -
1691481627.8105624-CDS-H-paniculata_contig9516:4803..49131691481627.8105624-CDS-H-paniculata_contig9516:4803..4913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 4804..4913 -
1622931182.4691026-CDS-H-paniculata_contig9516:5193..53071622931182.4691026-CDS-H-paniculata_contig9516:5193..5307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 5194..5307 -
1691481627.8206513-CDS-H-paniculata_contig9516:5193..53071691481627.8206513-CDS-H-paniculata_contig9516:5193..5307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 5194..5307 -
1622931182.4859264-CDS-H-paniculata_contig9516:5563..57091622931182.4859264-CDS-H-paniculata_contig9516:5563..5709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 5564..5709 -
1691481627.8308816-CDS-H-paniculata_contig9516:5563..57091691481627.8308816-CDS-H-paniculata_contig9516:5563..5709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 5564..5709 -
1622931182.5077064-CDS-H-paniculata_contig9516:6099..61121622931182.5077064-CDS-H-paniculata_contig9516:6099..6112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 6100..6112 -
1691481627.8409252-CDS-H-paniculata_contig9516:6099..61121691481627.8409252-CDS-H-paniculata_contig9516:6099..6112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9516 6100..6112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9516.17248.1

>prot_H-paniculata_contig9516.17248.1 ID=prot_H-paniculata_contig9516.17248.1|Name=mRNA_H-paniculata_contig9516.17248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNN
ETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPN
IEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEE
RKRAESRATALEKSSSK*
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mRNA from alignment at H-paniculata_contig9516:3237..8119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9516.17248.1 ID=mRNA_H-paniculata_contig9516.17248.1|Name=mRNA_H-paniculata_contig9516.17248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4883bp|location=Sequence derived from alignment at H-paniculata_contig9516:3237..8119- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCCTAACCCTTGATCAACTGTCTGCCAAGCTAGCCGAAATTGGTCTCG TAGCAGACAGCTCAAACCATTCAGCAATGGCTCAAAGAGATGGGCGCCAC GAGGGTGAAACGACGATTACCCCATCTCTGTCGCTGATGCACCAAAAGAG CCGGGTAGACTTCATCCTGGACCAAGCAGCAAGGAACCGCATCACGTTCA GGAGCGGCTTCCAAACAATTCACATCGACGAAGCGTGGTTTTAACCACTT TGCGATAAGGATCACGTGCGTGTGTTCCCTGGGAAGTAAAGAGTGGGGTC CAAAGTACAGCACAAGAGTCACGTTCGTAAGGTGATGATTCATCTGCGCC GTTTCGGGTCTAAATCCTTCCCCCGTTTCAACGGCAAGATGGTAATTTGG CGTGTTTTCGTCATCAATCAGGCGCAGAGGAATTCGGCCCGGCGTGAACG TGGGCAGTAATACGAGTTCGACGTGACCATTGACGCCGGGTGGTACCAGG AGGGGAAGACTCTTCTCTCCCAGCATTGAGGGAAAAGATGCCGTGCTGGG AGGGTGAGGAAGTGGTCGCGCAGCAGGACGGAGTAACCCCTCACACGGGG AAAGACACGTCTCGGAAGCTCAACGAACTCGAGAGGGACGAGGGATAGAA CATCAATCTCGTAACTCAGCCTGCGCGGTCACCATTTTTTTTACTGGAAG GAAATGAGAAAACCTTTTGATGGACGTTTACCCCCCAAAATCGGGTTCGT GTGTCGGTGACCCGAAGGTTCGACTTGAGGACCGCCGCGATAGTCGTGTA ACTTTCACTCCTGGAAACCCTTGTACATATGAAGTGGACGGCCTCGTAAC CTTATAAAGTGTGTAGCAAATCCTTAAGCGGTAAAATCAAGCCGTGTAGG CACCAAAAAGTCATGATTTCGAGGTACATCGTACCTGAACAGAACAGAAC GGTTGATGGGGCACGAGGATAGATGAGAATAAAATTAACGTGAAAAATAG CAAGGTATCCAACGCAAAAAGCTGGGTTTAATTTGGAAGTTATCTGAGAA CATGGTCCCGGGCGTAACTGTCTCAAAGAGATACTGCGTGCCATATGCGG GAAGTCTAGGAACGTGCTCTCCATACACCATGAAAAAATGAAAAATGTGA TACGGTACCTACACACGCGTGATATTGATACCGACCTCAACATGTCTTAA TTTTTGTCTGATTTTCGCCGACACCACAGGTGTACGGTGATGCACAAGAG AGCCCGCAAACGGAATCTTACTGGGGAAACGTGAACTGCACTGGTGAGTG TTACTGATGGAATAAATCTGTCGTATCTATCAATGTGGAATATATATAGG TTGGGCGAGGTTCATGCCAACACAGTACCGCCATGATGCGTCAGCACCTC AAGCAAGTGAGGAATGGCACGACGCGCTCATGCAGCAGTTTGCTGTCCCA CCCTACGTGATCGATTATCTACCGTTACGAACGTGTTGGCCCCTTCATAA TGTAAAAATTGCAACAATGGTCCTTCAGTGTGATGTCAAGCGCTCTTGGA ATGCCCGTGGTGAAATATTTCCATCTCGTCTTGAAAGGTGAAAGAAGTCC ACGTGCAGTGGAAAAGCACGTCGATCGACAGGTCTGGACGAGATGATTTG AACGAAACGAATATCGATATTACTTGTGTAGTAGTCTCCCAAGAAGGTGG ACCTGAAGAAAGTGTCCCGCTGGGGTGCAAGGCAGCGCTTTATGCCACTA GTGTTCCACCTAAACGCAATCGCTGTCCTTGACGCGTGGACCATCCCCAC TGCGGTCACTCGCTCTCTCTGGGAGATTCACGTACACAACTTGGAAATCT TTATCCCCTTTTCCTGCGTGTTTTGTGCGTTTTACCAGGTGTACGCGCTT GTTACGATGAGGGTAAGCGCGTGGCGGAGACCCTTTGTTTTGACTTCCAC AGGCAGCACAAGATCGCTGTGCGCGTGGCCAGGATTTTCAATACGTTCGG CCCCGGCATGCATCCATATGGTGAGAAATTCAATATTTCAATTGTTGACC CATATGCCCGAACGAGGGTCCCGAGATATGACTACTGCGGGCCACCTGGC CTGGGGGAGTATTGCTATTTTGCTGTTTTGCTGGCTGTACCACGATGCAG TTTATGTTTGATCGTGGTTCGTACGATACCGGAATTTTGCTCAAGGACAA TATTGCTTTCTCCATTTTTCAATGTTGACGCATTTGTTGAGGCGCGCGAA GGGGGCCTCGTTGAGAAAAAATATGTTCAAGCTGTTCCGAGTTTGTGCAT CTCGATGTAGTCAGAGATGCATGGAAGTGTGTTCTGATGGTAGCTGCTGA TATATTTCCAGTGCCCCATTAGAGGATGGATTGCCATTGTTCGAACGTTC GGGTGTTCAGATGGACGTGTGGTAAGCAATTTTATCATGCAAGCGTTGAG CGGCGAGGACATCACGATCTACGGAGATGGCGGTCAGACCCGCTCCTTCT GCTATGTGGACGATCTCATCGACGGACTCGTCAGGCTCATGAACAATGAG ACTGAGGTCAGTCTTGCTGAGTCTAGTTTTGGATGCGTGTCGTGGTCCGC CCCCCGAAAAGCAAGCGGGCGACCATGAGGGTGCGCCTGCACCTTGCTTG TTGTCAATATGTCTGATTGGCGTGCGAATGCTACGATGCTGTATGTTTGG GTGGTTGAGGATGAACAGCTACGCTCAAGTGTAATTGACTATTGGATATG AGTTCCCCTCGCTCTTCCCACTAAGAACAGAAACAGTTCTGAACTTTTTG TGCTCGCTACAGATTGGGCCAATGAACATTGGAAATCCAATGGAGTTCAC GATCAAGCAACTGGCCGAGATGACTATCCGCTTGACGCAGTCCTCCAGCA AGATTGTCTTCAAGCCGCTGCCCCAGGTGTTTGGTTGATTGGAAAGTCTG TTTTCTATTTTGACGCTGTAATGGACCTGCCTGCTGCACACTACCGACGT TGGCTAACACGCGCAGTGAGTGGATACGTTCCCGTAGTTCAGGTCAAGAT TCAGTGAAGTATAGGTTCATGTTTCATGTCCAGTACGCTCTACTGATGTC GAGTGAGCTGTACATGTTCTCGCGACAGTCGAGTCGTCCGTGCATATTTA TGCCGATATATCCCATATCACGACTGAGGACTGTTTCCTCTCCGCGGTGC CGACAGGACGACCCCAAGCAGCGTAGGCCGAATATCGAGTTTGCTAAGAA GGCACTGGACTGGGAGCCGGCCGTGCCGTTAGAGGAGGGCTTAAAGAAGA CTATTGAATACTTCAGGTCAGTAATTCCTTCATGCACCTTTTTCCCGTGG AATACGTGTCATGGAGAAAGTCTAGTGTTACGGTTTATACCTGAGGCATA TTACCCCTGTATGAAGTATGTAGTGTCACGGCCCCTTCCTGTATCGTCGG CAACAAACTATTTCATGACCTGACAACCAGCCCATGTTGGCTACACATCT TTTAAAAAAAGTATCTGCTAGAGCGTCGAAAACAAATCATATACAGAGGG ACAGTATCATAACTGAGCGCACATCCCTCTCTGTTCGCTGTATTCAGAAA CCTTGACATGAGGAACTTCAAGAAGCCAACTACTCATGACGCGCACAAAA ATTCGGAGGAGGAGAGGAAGCGCGCAGAGTCTAGGGCTACCGCCTTGGAG AAAAGTTCGTCGAAGTAATTCGATAACTTGTGTAATCCTACCGTACAAGC GCTTTTTTCCGTGATGCAAATTAGCTACTTTTTTTTTACTTCTGGGGTTG AAAAATGTGTCAAGTATTGCCTGTTCTCCATGACACACCCCGTCGATTAT ACCAAGACTGAGTGATCTGTGTTTTGTCTGGGGGCGTCAGGTTACCAGTA GCTGTAAGTCACTCGTTCGGGCATATGTACTGTTCGAAGGAATTCAGATA GGTTTCTTGTATAATTATTGAATGTACGAGAGGGTTGCAGTACATGGTGA TGCAGGACAGAAGAATATTGCACCGTATCCTGTAGGCAGTAGCGCACTTT CGTTGACCAGAATCCAACATAACCGTAGAATGGGAGTCCTACTATCGCCG ATTTGCTGGGCAACTCCTTGGCTGATATGGTTTACAGCTGGAGCATAGTT ATGATACGGGGTGATCGATAGCGCAAAACCGGTCCCAACGACCAAAATGA ATTCATTGTATTGTTGGATGTACCTTTTAGCCCAACAAGTACGGAACAGG TACATGTATTAAAATATTTTGCACTGAGATCGAACTGGCGTAAGCGAATG TTTTGTGTAAATGTCGACAGTACCTGGTTGTACGTTATTGTGGAAGACCG ACTTGATCGTGAGCCCCAGTGAACTCTGCAGCATCAGGCTAGCAGATAAA CAGGTCAGGCAGTGAATTGTTGCCGAGGTAGTGGAAAAATCGGGAGTATT ATTGGTCGGCATGTTGCGGAGCATTGTCGGGCCAAACAATTCCAAACTTT GGAGGCGAAGTCTACGGTAAATTAAATCACGACGATATCTATATTACCCC CCCTCTCCTATATAACTAAGGTCGGACACAAATGTTAACAGTTTTGAAAT GCAAACGATTTGCAGATCTTGCGTGAAAGTAGGGCTTAAATAGCGGAATA GGCCGATGTGGTTCGGACGTACGCCCGAACGGGTAAAGTAATCGGTAAAT CGTCCACTTGGTGAGACCGCACGGAGGAGGTGCTTACCCCGCAAAGGATC GAATGCCTCTATCGTGTTGAACACGTAAACGCTTTCGATAAATTTCCGCT CCTTCATGGTGAATAAGTTCAACTTATTGCGAATTCTTGTGTGCCAGTAT TTCAAATATTAATATAATCAACGACAAATATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9516:3237..8119-

>mRNA_H-paniculata_contig9516.17248.1 ID=mRNA_H-paniculata_contig9516.17248.1|Name=mRNA_H-paniculata_contig9516.17248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig9516:3237..8119- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCATATGATGCATCCATATGATGGACGTGTGGTAAGCAATTTTA
TCATGCAAGCGTTGAGCGGCGAGGACATCACGATCTACGGAGATGGCGGT
CAGACCCGCTCCTTCTGCTATGTGGACGATCTCATCGACGGACTCGTCAG
GCTCATGAACAATGAGACTGAGATGGACGTGTGGTAAGCAATTTTATCAT
GCAAGCGTTGAGCGGCGAGGACATCACGATCTACGGAGATGGCGGTCAGA
CCCGCTCCTTCTGCTATGTGGACGATCTCATCGACGGACTCGTCAGGCTC
ATGAACAATGAGACTGAGATTGGGCCAATGAACATTGGAAATCCAATGGA
GTTCACGATCAAGCAACTGGCCGAGATGACTATCCGCTTGACGCAGTCCT
CCAGCAAGATTGTCTTCAAGCCGCTGCCCCAGATTGGGCCAATGAACATT
GGAAATCCAATGGAGTTCACGATCAAGCAACTGGCCGAGATGACTATCCG
CTTGACGCAGTCCTCCAGCAAGATTGTCTTCAAGCCGCTGCCCCAGGACG
ACCCCAAGCAGCGTAGGCCGAATATCGAGTTTGCTAAGAAGGCACTGGAC
TGGGAGCCGGCCGTGCCGTTAGAGGAGGGCTTAAAGAAGACTATTGAATA
CTTCAGGACGACCCCAAGCAGCGTAGGCCGAATATCGAGTTTGCTAAGAA
GGCACTGGACTGGGAGCCGGCCGTGCCGTTAGAGGAGGGCTTAAAGAAGA
CTATTGAATACTTCAGAAACCTTGACATGAGGAACTTCAAGAAGCCAACT
ACTCATGACGCGCACAAAAATTCGGAGGAGGAGAGGAAGCGCGCAGAGTC
TAGGGCTACCGCCTTGGAGAAAAGTTCGTCGAAGTAAAAACCTTGACATG
AGGAACTTCAAGAAGCCAACTACTCATGACGCGCACAAAAATTCGGAGGA
GGAGAGGAAGCGCGCAGAGTCTAGGGCTACCGCCTTGGAGAAAAGTTCGT
CGAAGTAA
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