mRNA_H-paniculata_contig951.17245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: D7FZD1_ECTSI (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD1_ECTSI) HSP 1 Score: 415 bits (1066), Expect = 1.050e-139 Identity = 213/237 (89.87%), Postives = 225/237 (94.94%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQDRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL AVQQG+TSLGIK +T+GVVIVTEKKLP+VL+DSDEVSKISLVTPSTGFVYSGLGPDYRVLAR+SRKQAQ+Y+NIYRE+QPV QLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSE+AELDDAVHTALLTMREGFEGEMTEKNIE DRKFR+LSEQE KDFLDEAN
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALMAVQQGKTSLGIK---ATNGVVIVTEKKLPSVLIDSDEVSKISLVTPSTGFVYSGLGPDYRVLARKSRKQAQAYYNIYREVQPVGQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEEAELDDAVHTALLTMREGFEGEMTEKNIE------DRKFRILSEQEGKDFLDEAN 229
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A835Z0F7_9STRA (20S proteasome subunit alpha 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F7_9STRA) HSP 1 Score: 396 bits (1018), Expect = 2.290e-132 Identity = 197/236 (83.47%), Postives = 220/236 (93.22%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQDRKFRVLSEQEVKDFLDEA 708
GD+AYSFSLTTFSRTGKLLQIEYAL AVQQG+TSLGIK +T+GVVI TEKKLPTVLVD +V+KI+LVTPSTGFVYSGLGPDYRVL R SRK+AQ YFN YRE+QPVSQLVRDTAGVMQEYTQ GGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKA+AIGKNF+NAK+FLEKR++++ ELDDA+HTALLTMREGFEGEMTE NIE+GIVG+DRKFR+L+ EV+D+LDEA
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIK---ATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 234
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: W7TKE3_9STRA (Proteasome subunit alpha type 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKE3_9STRA) HSP 1 Score: 377 bits (967), Expect = 1.150e-124 Identity = 187/237 (78.90%), Postives = 212/237 (89.45%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQDRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL A QQG+TSLGI+ +T+GVVI TEKKLP+VL+D V KI L+ PSTGFV+SGLGPDYRVL R+SRK+AQSYF YRE QPV QLVRDTAGVMQE+TQ GGVRPFG+SLLVAGYDD+GPQL+QVDPSGAYFGW+ATAIGKN VNAKNFLEKR++E+ ELDDAVHTALLT+REGFEGEM E NIE+GI+G DRKFR+L+ EVKD+LDEAN
Sbjct: 3 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIR---ATNGVVIATEKKLPSVLIDEAHVQKIELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYFLQYREHQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWQATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNESNIEIGIIGADRKFRILTPAEVKDYLDEAN 236
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A7S1BSA3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSA3_9STRA) HSP 1 Score: 364 bits (934), Expect = 1.030e-119 Identity = 174/237 (73.42%), Postives = 208/237 (87.76%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQDRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL AV GRTSLGI + DGVVI T+KK+ + LVD+D V ++ +TPSTGFVYSG+GPDYRVL R++RK +QSY+ YRE+QPV LV+ TAGVMQEYTQ GGVRPFGVSLLVAGYDDDGP LYQVDPSGAYFGW+ATAIGKN++NAKNFLEKR+ E+ EL+DA+HTALLT+REGFEGEM +NIEVGI+G+DRKF++L+ Q+++D+LDEAN
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGIAAK---DGVVIATDKKIASALVDTDHVGRVEEITPSTGFVYSGVGPDYRVLVRKARKSSQSYYRTYREVQPVGALVKQTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPHLYQVDPSGAYFGWRATAIGKNYINAKNFLEKRYQEEMELEDAIHTALLTLREGFEGEMNGRNIEVGIIGKDRKFKLLNPQQIQDYLDEAN 235
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A7S1ZX62_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX62_TRICV) HSP 1 Score: 353 bits (905), Expect = 2.540e-115 Identity = 181/239 (75.73%), Postives = 205/239 (85.77%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDG-PQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQ-DRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL AV GRTSLGI C+ DGVV+ T+KK + LVDSD+V+K+ V GFVYSG+GPDYRVL R++RK AQSYF +YRE QPVSQLV+ TA VMQEYTQ GGVRPFGVSLLVAG D DG P+LYQVDPSGAYFGWKATAIGKN+VNAKNFLEKR+++D EL+DAVHTALLT+REGFEGEMT KNIEVGIV + D KFRVL+ EV+D+LDEAN
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGI---CARDGVVVATDKKFQSDLVDSDDVTKVERVNDGCGFVYSGVGPDYRVLVRKARKSAQSYFRVYREPQPVSQLVKSTASVMQEYTQSGGVRPFGVSLLVAGVDGDGTPRLYQVDPSGAYFGWKATAIGKNYVNAKNFLEKRYTDDMELEDAVHTALLTLREGFEGEMTSKNIEVGIVSKSDGKFRVLTADEVQDYLDEAN 237
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: B7GC84_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC84_PHATC) HSP 1 Score: 348 bits (893), Expect = 1.560e-113 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDG-PQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQDRKFRVLSEQEVKDFLDEA 708
GD+AYSFSLTTFSRTGKLLQIEYAL AV GRT+LGI C+ DGVVI T+KKLP+VLVD+ V K+ +TP+TGF YSG+GPDYRVL +R+RK +Q+Y +Y +I+P+SQLV+ TAGVMQEYTQRGGVRPFGVSLLVAG D DG P LYQVDPSGAYFGWKATAIGKNFV+AK+FLEKR+S+D EL+DA+HTALLT+REGFEGEM+ NIEVGIV QD KF+VL+ ++++D+LDEA
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTALGI---CAKDGVVIATDKKLPSVLVDTAHVHKMETITPTTGFCYSGVGPDYRVLVKRARKSSQAYVRMYGDIEPISQLVKSTAGVMQEYTQRGGVRPFGVSLLVAGLDGDGRPGLYQVDPSGAYFGWKATAIGKNFVSAKSFLEKRYSDDMELEDAIHTALLTLREGFEGEMSADNIEVGIVKQDGKFQVLTPEQIQDYLDEA 235
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A7S0C5Z3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C5Z3_9STRA) HSP 1 Score: 346 bits (887), Expect = 1.330e-112 Identity = 175/240 (72.92%), Postives = 206/240 (85.83%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDG-PQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQ--DRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL AV GRTSLGI C+ DGVVI T+KKL + LVD ++V+K+ VT S+GFVYSG+GPDYRVL +++RK +Q+Y+ YRE QPVSQLV+ TAGVMQEYTQ GGVRPFGVSLLVAG D DG P+LYQVDPSGAYFGWKATAIGKN VNAKNFLEKR+ ED EL+DA+HTALLT+REGFEGEMT +NIEVGI+ + KFR+L+E +++D+LDEAN
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGI---CAKDGVVIATDKKLASSLVDIEQVNKVEAVTKSSGFVYSGVGPDYRVLVKKARKSSQAYYRTYREDQPVSQLVKQTAGVMQEYTQSGGVRPFGVSLLVAGMDSDGEPRLYQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYQEDVELEDAIHTALLTLREGFEGEMTSRNIEVGIMSKADGGKFRLLTEDQIQDYLDEAN 238
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A6T7HTC8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HTC8_9STRA) HSP 1 Score: 345 bits (886), Expect = 2.090e-112 Identity = 174/243 (71.60%), Postives = 209/243 (86.01%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYD-DDG----PQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVG-QDRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL AV GRTSLGI C+TDGVVI T+KKL + LVD+D+VSK+ +TPS+GFVYSG+GPDYRVL R++RK +Q+Y+ YRE QP++QLV+ TAGVMQEYTQ GGVRPFGVSLLVAG D ++G P+LYQVDPSGAYFGWKATAIGKN+VNAKNFLEKR+ ED EL+DA+HTALLT+REGFEGEMT NI+VG+V D KF +L+ ++++D+LDEAN
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGI---CATDGVVIATDKKLTSPLVDTDQVSKVEAITPSSGFVYSGVGPDYRVLVRKARKSSQAYYREYRETQPITQLVKGTAGVMQEYTQSGGVRPFGVSLLVAGIDIEEGGKKVPRLYQVDPSGAYFGWKATAIGKNYVNAKNFLEKRYQEDIELEDAIHTALLTLREGFEGEMTAHNIQVGVVSVTDGKFNLLTPEQIQDYLDEAN 241
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A8J2SQ24_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQ24_9STRA) HSP 1 Score: 344 bits (883), Expect = 4.960e-112 Identity = 168/235 (71.49%), Postives = 205/235 (87.23%), Query Frame = 1 Query: 4 DAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQDRKFRVLSEQEVKDFLDEA 708
DA+YS+SLTTFSR+GKLLQIEYAL AV +G+TS+GIK + +GVV++T+KK+ LVD +V K+ V+PS GFVYSG+GPDYRVL +++RKQAQ+YF YR ++PV LV+DTA VMQEYTQ GGVRPFG+SLLVAGYDD+GPQL+QVDPSGAY+GWKA+AIGKNF NA++FLEKR+++D ELDDA+HTALLTMREGFEGEMTE IEVGIVG+DR FRVL+ EVKDFLDE+
Sbjct: 4 DASYSYSLTTFSRSGKLLQIEYALTAVGEGKTSIGIKAK---NGVVLITDKKIQNKLVDVQQVKKLEKVSPSVGFVYSGVGPDYRVLVKKARKQAQAYFLQYRALKPVKALVQDTASVMQEYTQSGGVRPFGISLLVAGYDDEGPQLFQVDPSGAYYGWKASAIGKNFKNARSFLEKRYNDDVELDDAIHTALLTMREGFEGEMTEHTIEVGIVGEDRVFRVLTPAEVKDFLDES 235
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Match: A0A6S9F6V1_9STRA (Hypothetical protein n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A6S9F6V1_9STRA) HSP 1 Score: 342 bits (877), Expect = 4.090e-111 Identity = 172/239 (71.97%), Postives = 205/239 (85.77%), Query Frame = 1 Query: 1 GDAAYSFSLTTFSRTGKLLQIEYALKAVQQGRTSLGIKGECSTDGVVIVTEKKLPTVLVDSDEVSKISLVTPSTGFVYSGLGPDYRVLARRSRKQAQSYFNIYREIQPVSQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDG-PQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEDAELDDAVHTALLTMREGFEGEMTEKNIEVGIVGQ-DRKFRVLSEQEVKDFLDEAN 711
GD+AYSFSLTTFSRTGKLLQIEYAL AV GRTSLGI C+ DGVVI T+KKL + LVD+D+V K+ +T +GFVYSG+GPDYRVL R++RK +Q+Y+ Y E +PVSQLV+ TAGVMQEYTQ GGVRPFGVSLLVAG + DG P+LYQVDPSGAYFGWKATAIGKN+VNAKNFLEKR+ +D EL+DA+HTALLT+REGFEGEMT NIEVG+V + D KFR+L+ ++V+D+LDEAN
Sbjct: 2 GDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGI---CAKDGVVIATDKKLSSTLVDTDQVCKVEKITSGSGFVYSGVGPDYRVLVRKARKSSQAYYRQYAEDKPVSQLVKTTAGVMQEYTQSGGVRPFGVSLLVAGVEGDGTPRLYQVDPSGAYFGWKATAIGKNYVNAKNFLEKRYQDDMELEDAIHTALLTLREGFEGEMTNTNIEVGVVSKSDGKFRLLTPEQVQDYLDEAN 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig951.17245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig951.17245.1 >prot_H-paniculata_contig951.17245.1 ID=prot_H-paniculata_contig951.17245.1|Name=mRNA_H-paniculata_contig951.17245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp MQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFback to top mRNA from alignment at H-paniculata_contig951:22133..29846+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig951.17245.1 ID=mRNA_H-paniculata_contig951.17245.1|Name=mRNA_H-paniculata_contig951.17245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7714bp|location=Sequence derived from alignment at H-paniculata_contig951:22133..29846+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig951:22133..29846+ >mRNA_H-paniculata_contig951.17245.1 ID=mRNA_H-paniculata_contig951.17245.1|Name=mRNA_H-paniculata_contig951.17245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig951:22133..29846+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |