mRNA_H-paniculata_contig12736.1724.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12736.1724.1
Unique NamemRNA_H-paniculata_contig12736.1724.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A2P4YVT1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVT1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.180e-15
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   40 YEKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            +E  +  TP + H+R+F C AYV+   ++RRK D K   G F+G++E S SYR+Y+ E   V +SR+V FDE  F
Sbjct:   21 FEIVYKSTPNVKHMRIFGCKAYVLTPREKRRKWDPKAREGTFMGYEERSKSYRVYDIEAGKVVISRDVTFDESSF 95          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A371GY67_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371GY67_MUCPR)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-14
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   43 EKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEED 261
            E W G  PK+DHLRVF C+AY    +Q R K+D K    +F+G+D +S  Y++YN  N  + +S++V F+EE+
Sbjct:  103 EAWSGVKPKVDHLRVFGCIAYAHVPNQGRSKIDDKSVKHVFIGYDANSKGYKLYNPNNGKMIISKDVEFNEEE 175          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 77.8 bits (190), Expect = 1.140e-14
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   43 EKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            E W G+ P + HL++F C+AY     Q R+KLD +    +F+G+DE S +YR+YN   K + +SR+V FDE D+
Sbjct:  498 EAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 571          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 77.8 bits (190), Expect = 1.140e-14
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   43 EKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            E W G+ P + HL++F C+AY     Q R+KLD +    +F+G+DE S +YR+YN   K + +SR+V FDE D+
Sbjct:  440 EAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 513          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 77.8 bits (190), Expect = 1.140e-14
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   43 EKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            E W G+ P + HL++F C+AY     Q R+KLD +    +F+G+DE S +YR+YN   K + +SR+V FDE D+
Sbjct: 1466 EAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A151S498_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S498_CAJCA)

HSP 1 Score: 76.3 bits (186), Expect = 2.400e-14
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   40 YEKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDE 255
            +E WHG  P ++HL+VF C+        +R KLD K   G+FLG++ +S  YRIYN  +K + +SRNV+FDE
Sbjct:   29 FEAWHGRKPSMEHLKVFGCVL-CSCSRMKRDKLDQKSKVGVFLGYNNNSKGYRIYNPTSKKILVSRNVKFDE 99          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A061F4C8_THECC (Integrase catalytic domain-containing protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F4C8_THECC)

HSP 1 Score: 76.6 bits (187), Expect = 2.500e-14
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   40 YEKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEE 258
            YE W G  P + +LRVF C+AY + +SQ + KLD K    +FLG+   S +YR+YNS+N  + +SR+V F+E+
Sbjct:  307 YEAWRGMRPWVSYLRVFGCIAYALVKSQTQHKLDEKSEKCIFLGYSSQSKAYRLYNSKNGKIIISRDVIFNED 379          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: H3H9X7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9X7_PHYRM)

HSP 1 Score: 73.6 bits (179), Expect = 9.150e-14
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 KSRLDAT-AQRRNAYEKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            K+RL +   + +  +E  +   P + H+RVF C  Y++   ++RRK D K  AGLFLG++E S +YR+Y+ E   V +SR+V FDE  F
Sbjct:   23 KNRLPSPKVEHKTPFEIVYKSKPSVKHMRVFGCQTYILTPKEKRRKWDPKARAGLFLGYEEVSKAYRLYDIEAGQVVVSRDVNFDESAF 111          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: H3H9U4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9U4_PHYRM)

HSP 1 Score: 72.8 bits (177), Expect = 1.690e-13
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 KSRLDAT-AQRRNAYEKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            K+RL +   + +  +E  +   P + H+RVF C  Y++   ++RRK D K  AGLFLG++E S +YR+Y+ E   V +SR+V FDE  F
Sbjct:    7 KNRLPSPKVEHQTPFEIVYKSKPSVKHMRVFGCQTYILTPKEKRRKWDPKARAGLFLGYEEVSKAYRLYDIEVGQVVVSRDVNFDESAF 95          
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 74.3 bits (181), Expect = 1.860e-13
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   43 EKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKEWAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDF 264
            E W G+ P + H ++F C+AY       R+KLD +    +F+G+DE S +YR+YN   K + +SR+V FDE D+
Sbjct:  545 EAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12736.1724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4YVT1_9STRA9.180e-1544.00Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A371GY67_MUCPR1.090e-1443.84Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
A0A6A3C4D2_HIBSY1.140e-1443.24FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY1.140e-1443.24Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A2WXP0_HIBSY1.140e-1443.24Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A151S498_CAJCA2.400e-1445.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A061F4C8_THECC2.500e-1445.21Integrase catalytic domain-containing protein n=1 ... [more]
H3H9X7_PHYRM9.150e-1440.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H9U4_PHYRM1.690e-1340.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A2WSU7_HIBSY1.860e-1340.54Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12736contigH-paniculata_contig12736:7232..7516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.4
Seed ortholog evalue4e-12
Seed eggNOG ortholog3641.EOY09394
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs38220@33090,3GPPE@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.5586717-CDS-H-paniculata_contig12736:7231..75161622928996.5586717-CDS-H-paniculata_contig12736:7231..7516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12736 7232..7516 +
1691480695.4193766-CDS-H-paniculata_contig12736:7231..75161691480695.4193766-CDS-H-paniculata_contig12736:7231..7516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12736 7232..7516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12736.1724.1prot_H-paniculata_contig12736.1724.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12736 7232..7516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12736.1724.1

>prot_H-paniculata_contig12736.1724.1 ID=prot_H-paniculata_contig12736.1724.1|Name=mRNA_H-paniculata_contig12736.1724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
KSRLDATAQRRNAYEKWHGETPKLDHLRVFDCMAYVMFQSQQRRKLDGKE
WAGLFLGHDEDSPSYRIYNSENKSVQLSRNVRFDEEDFVAGYRG*
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mRNA from alignment at H-paniculata_contig12736:7232..7516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12736.1724.1 ID=mRNA_H-paniculata_contig12736.1724.1|Name=mRNA_H-paniculata_contig12736.1724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig12736:7232..7516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCGCGCCTCGACGCGACCGCACAACGGAGAAACGCGTACGAAAAATG GCACGGCGAGACACCAAAGTTGGACCATCTTCGCGTCTTCGACTGCATGG CGTATGTTATGTTCCAGTCGCAGCAAAGACGCAAGCTCGACGGCAAAGAA TGGGCGGGGTTGTTTCTGGGGCACGACGAGGACAGCCCGAGTTATCGCAT ATATAACTCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAGATTTG ACGAAGAGGATTTCGTAGCGGGTTATCGCGGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12736:7232..7516+

>mRNA_H-paniculata_contig12736.1724.1 ID=mRNA_H-paniculata_contig12736.1724.1|Name=mRNA_H-paniculata_contig12736.1724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig12736:7232..7516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCGCGCCTCGACGCGACCGCACAACGGAGAAACGCGTACGAAAAATG
GCACGGCGAGACACCAAAGTTGGACCATCTTCGCGTCTTCGACTGCATGG
CGTATGTTATGTTCCAGTCGCAGCAAAGACGCAAGCTCGACGGCAAAGAA
TGGGCGGGGTTGTTTCTGGGGCACGACGAGGACAGCCCGAGTTATCGCAT
ATATAACTCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAGATTTG
ACGAAGAGGATTTCGTAGCGGGTTATCGCGGATAGAAATCGCGCCTCGAC
GCGACCGCACAACGGAGAAACGCGTACGAAAAATGGCACGGCGAGACACC
AAAGTTGGACCATCTTCGCGTCTTCGACTGCATGGCGTATGTTATGTTCC
AGTCGCAGCAAAGACGCAAGCTCGACGGCAAAGAATGGGCGGGGTTGTTT
CTGGGGCACGACGAGGACAGCCCGAGTTATCGCATATATAACTCGGAAAA
CAAGAGCGTCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAGGATTTCG
TAGCGGGTTATCGCGGATAG
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