mRNA_H-paniculata_contig950.17240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig950.17240.1
Unique NamemRNA_H-paniculata_contig950.17240.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig950.17240.1 vs. uniprot
Match: D8LEM0_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.640e-11
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 KADQAAAELSQVLRKERAGQARIADAQSEAEELRGEMDSMKETFSRHRNVVRKXXXXXXXXXXXXXXXXXXXQSLTLEAEKQSTRHQQITADAA 282
            KAD+ A EL+QVLR+ERAGQ+ IADAQ E  +L+       + F++HR VVRK                    SL+LEA+KQS+RH Q +A+AA
Sbjct:  195 KADRNATELAQVLRRERAGQSSIADAQVEVGDLKAXXXXXXDAFAKHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHHQASAEAA 288
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BLAST of mRNA_H-paniculata_contig950.17240.1 vs. uniprot
Match: A0A6H5KZW7_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.190e-10
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 KADQAAAELSQVLRKERAGQARIADAQSEAEELRGEMDSMKETFSRHRNVVRKXXXXXXXXXXXXXXXXXXXQSLTLEAEKQSTRHQQITADAA 282
            KAD+ A EL+QVLR+ERAGQ+ IADAQ E  +L+ E+  M++ F++   VVRK                    SL+LEA+KQS+RH Q +A+AA
Sbjct:   89 KADRNATELAQVLRRERAGQSSIADAQVEVGDLKAELAEMRDAFAK--GVVRKSQEVINAHEKALKNARSELLSLSLEADKQSSRHHQASAEAA 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig950.17240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM0_ECTSI3.640e-1145.74PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZW7_9PHAE3.190e-1045.74PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig950contigH-paniculata_contig950:13380..14361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-23_002510.1
Exons3
Model size289
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig950.17240.1prot_H-paniculata_contig950.17240.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig950 13382..14361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.443667-CDS-H-paniculata_contig950:13381..134601622931181.443667-CDS-H-paniculata_contig950:13381..13460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 13382..13460 -
1691481627.2342126-CDS-H-paniculata_contig950:13381..134601691481627.2342126-CDS-H-paniculata_contig950:13381..13460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 13382..13460 -
1622931181.461918-CDS-H-paniculata_contig950:13894..139631622931181.461918-CDS-H-paniculata_contig950:13894..13963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 13895..13963 -
1691481627.246955-CDS-H-paniculata_contig950:13894..139631691481627.246955-CDS-H-paniculata_contig950:13894..13963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 13895..13963 -
1622931181.4809368-CDS-H-paniculata_contig950:14224..143611622931181.4809368-CDS-H-paniculata_contig950:14224..14361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 14225..14361 -
1691481627.2638197-CDS-H-paniculata_contig950:14224..143611691481627.2638197-CDS-H-paniculata_contig950:14224..14361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 14225..14361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig950.17240.1

>prot_H-paniculata_contig950.17240.1 ID=prot_H-paniculata_contig950.17240.1|Name=mRNA_H-paniculata_contig950.17240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
KADQAAAELSQVLRKERAGQARIADAQSEAEELRGEMDSMKETFSRHRNV
VRKNQEVIESHENALQNARSELQSLTLEAEKQSTRHQQITADAAA
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mRNA from alignment at H-paniculata_contig950:13380..14361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig950.17240.1 ID=mRNA_H-paniculata_contig950.17240.1|Name=mRNA_H-paniculata_contig950.17240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at H-paniculata_contig950:13380..14361- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGGACCAAGCGGCGGCAGAGTTGTCTCAAGTTCTGAGAAAGGAAAG
AGCCGGACAAGCGCGCATCGCTGATGCACAGAGCGAAGCCGAAGAGCTCA
GAGGAGAGATGGACAGCATGAAAGAAACCTTTTCAAGGTCTGCACCATGT
TGATACTGCGAATCGCGACCTTATTACTGTCGTCGATGTTTCAACAAACA
CCACCCATGGCATCTATAGAAACAGATTCCCTAATCTTCCCCGATGTTTC
GACCAATGTACGCGTTGCTGGTACAAAATGTAGTTCTACGCAACTCTGTC
CATTGCATGCTCATATGTGGGTAAAATGGATACAGCGACGCCTTTCATGT
ATATATCTTCCACCCAGACAGCCACCGCCACTACTTGTCGTTTTGCAGGC
ACAGGAATGTCGTGCGGAAGAACCAGGAGGTGATTGAATCACATGAGAAT
GCTCTACAAAACGCGAGGCGAGTAGTTCTACATGTAGACGCAAACAGTTC
GCTTGGATGGATTGGACGGGGGTAAGGGATATCTGCAGCTCATTTAGTGA
TCGTTTGGATCCAAGTGCTCTCGATCTTGTAGCTAATGTTGCCATAAGAA
AAGAGACACAGTGAGTCAAGATATCTTGGTGAAAGTCCTGTAATACAGTC
CTCACGCTATTGCTTCAGACGCTGAATAATACCACCAGCTTCTACATGCT
GGAGAATTCCGCTCGAAAGCTCGACAGCTGGTAATGCGTTGGTTAGCAAA
GAAGTTCATGACGAGTTGTCAACACTCCGCTGAATAGATAGGTCGGGGAT
ACCGTGTTCTCGTCTCGAACGGAGAGAGATAAATGGTCGCCACCCCCCTC
CACCCTCGCCCCCTCGTTTTCTCATTTTGCGGAGTTCTTTTTCTCGCCCA
GGTCTGAACTTCAGTCCCTTACCCTAGAAGCTGAAAAGCAGAGCACTCGA
CACCAACAGATTACTGCAGATGCGGCCGCCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig950:13380..14361-

>mRNA_H-paniculata_contig950.17240.1 ID=mRNA_H-paniculata_contig950.17240.1|Name=mRNA_H-paniculata_contig950.17240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig950:13380..14361- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGGACCAAGCGGCGGCAGAGTTGTCTCAAGTTCTGAGAAAGGAAAG
AGCCGGACAAGCGCGCATCGCTGATGCACAGAGCGAAGCCGAAGAGCTCA
GAGGAGAGATGGACAGCATGAAAGAAACCTTTTCAAGAAGGCGGACCAAG
CGGCGGCAGAGTTGTCTCAAGTTCTGAGAAAGGAAAGAGCCGGACAAGCG
CGCATCGCTGATGCACAGAGCGAAGCCGAAGAGCTCAGAGGAGAGATGGA
CAGCATGAAAGAAACCTTTTCAAGGCACAGGAATGTCGTGCGGAAGAACC
AGGAGGTGATTGAATCACATGAGAATGCTCTACAAAACGCGAGGCACAGG
AATGTCGTGCGGAAGAACCAGGAGGTGATTGAATCACATGAGAATGCTCT
ACAAAACGCGAGGTCTGAACTTCAGTCCCTTACCCTAGAAGCTGAAAAGC
AGAGCACTCGACACCAACAGATTACTGCAGATGCGGCCGCCGTCTGAACT
TCAGTCCCTTACCCTAGAAGCTGAAAAGCAGAGCACTCGACACCAACAGA
TTACTGCAGATGCGGCCGCC
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