mRNA_H-paniculata_contig950.17239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig950.17239.1
Unique NamemRNA_H-paniculata_contig950.17239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig950.17239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig950contigH-paniculata_contig950:11761..12112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.3889515-CDS-H-paniculata_contig950:11761..119341622931181.3889515-CDS-H-paniculata_contig950:11761..11934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 11762..11934 -
1691481627.2092721-CDS-H-paniculata_contig950:11761..119341691481627.2092721-CDS-H-paniculata_contig950:11761..11934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 11762..11934 -
1622931181.4045882-CDS-H-paniculata_contig950:12084..121121622931181.4045882-CDS-H-paniculata_contig950:12084..12112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 12085..12112 -
1691481627.223438-CDS-H-paniculata_contig950:12084..121121691481627.223438-CDS-H-paniculata_contig950:12084..12112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig950 12085..12112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig950.17239.1prot_H-paniculata_contig950.17239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig950 11762..12112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig950.17239.1

>prot_H-paniculata_contig950.17239.1 ID=prot_H-paniculata_contig950.17239.1|Name=mRNA_H-paniculata_contig950.17239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
GGGDGAGGCGERVASVANTKSVGKGRTNSAEVHNNTQSGRSRPRGDANTS
EDCHSDAGEPKAKKIPK
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mRNA from alignment at H-paniculata_contig950:11761..12112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig950.17239.1 ID=mRNA_H-paniculata_contig950.17239.1|Name=mRNA_H-paniculata_contig950.17239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=352bp|location=Sequence derived from alignment at H-paniculata_contig950:11761..12112- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGGGTGACGGTGCAGGCGGATGCGGTGAGCTGAAGTTAGAAGCCCC
ATTCTAAAAATTACACGTTGTACATCCCGGTATACAATAGTTGCGATATG
CGGGTTAACACTCGTTCACCACGCGAGTTCCTGCTTGTCCCCAAGCTTGT
CCCCGTTATTTTCGTTGAAAATACTTAGGCGAGAGGGTCGCTAGCGTGGC
CAACACGAAGAGTGTCGGCAAAGGGCGAACCAACTCTGCCGAAGTTCACA
ATAATACTCAATCTGGCCGTTCAAGACCTCGTGGAGACGCCAACACCTCC
GAAGATTGTCATTCCGATGCGGGGGAACCGAAGGCGAAAAAAATCCCCAA
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig950:11761..12112-

>mRNA_H-paniculata_contig950.17239.1 ID=mRNA_H-paniculata_contig950.17239.1|Name=mRNA_H-paniculata_contig950.17239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig950:11761..12112- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGGGTGACGGTGCAGGCGGATGCGGGCGGGGGTGACGGTGCAGGCG
GATGCGGCGAGAGGGTCGCTAGCGTGGCCAACACGAAGAGTGTCGGCAAA
GGGCGAACCAACTCTGCCGAAGTTCACAATAATACTCAATCTGGCCGTTC
AAGACCTCGTGGAGACGCCAACACCTCCGAAGATTGTCATTCCGATGCGG
GGGAACCGAAGGCGAAAAAAATCCCCAAAGCGAGAGGGTCGCTAGCGTGG
CCAACACGAAGAGTGTCGGCAAAGGGCGAACCAACTCTGCCGAAGTTCAC
AATAATACTCAATCTGGCCGTTCAAGACCTCGTGGAGACGCCAACACCTC
CGAAGATTGTCATTCCGATGCGGGGGAACCGAAGGCGAAAAAAATCCCCA
AA
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