Homology
BLAST of mRNA_H-paniculata_contig95.17238.1 vs. uniprot
Match:
D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)
HSP 1 Score: 74.3 bits (181), Expect = 3.220e-10
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 3
Query: 240 LQDLPASALYPLVHGFLSECGLSKTSTTFRKEVDMTAKKLSKQQTALGIE-HDLLEIVNIYRKTM 431
++DLPASAL+PLVH FL ECGLS T+ R+E ++KKL KQQ ALG DLLEIVN +RK +
Sbjct: 10 VEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRL 74
BLAST of mRNA_H-paniculata_contig95.17238.1 vs. uniprot
Match:
A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)
HSP 1 Score: 74.7 bits (182), Expect = 3.780e-10
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 3
Query: 240 LQDLPASALYPLVHGFLSECGLSKTSTTFRKEVDMTAKKLSKQQTALGIE-HDLLEIVNIYRKTM 431
+ DLPASAL+PLVH FL ECGLS T+ R+E +AKKL KQQ ALG DLLEIVN +RK +
Sbjct: 10 VDDLPASALHPLVHSFLLECGLSATAAALREETGKSAKKLGKQQAALGGGCKDLLEIVNAHRKRL 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig95.17238.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.22e-10 / Id = 60.00 Expect = 3.78e-10 / Id = 61.54 Sequence D7FH06_ECTSI A0A6H5JYW0_9PHAE
Match Name E-value Identity Description
D7FH06_ECTSI 3.220e-10 60.00 LisH domain-containing protein n=1 Tax=Ectocarpus ... [more] A0A6H5JYW0_9PHAE 3.780e-10 61.54 LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 75.5 Seed ortholog evalue 1e-10 Seed eggNOG ortholog 2880.D7FH06 Preferred name SRP40 KEGG ko ko:K10771,ko:K11294 KEGG Pathway ko03410,ko05130,map03410,map05130 KEGG Module M00296 Hectar predicted targeting category other localisation GOs GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 EggNOG free text desc. RNA polymerase I core binding EggNOG OGs KOG2992@1,KOG2992@2759 EC 4.2.99.18 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400 Exons 4 Model size 2629 Cds size 1911 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig95.17238.1
>prot_H-paniculata_contig95.17238.1 ID=prot_H-paniculata_contig95.17238.1|Name=mRNA_H-paniculata_contig95.17238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=637bp
MTLQDLPASALYPLVHGFLSECGLSKTSTTFRKEVDMTAKKLSKQQTALG back to top mRNA from alignment at H-paniculata_contig95:48860..53986+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig95.17238.1 ID=mRNA_H-paniculata_contig95.17238.1|Name=mRNA_H-paniculata_contig95.17238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5127bp|location=Sequence derived from alignment at H-paniculata_contig95:48860..53986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)CATCCATCACATAGTCATTGCCTCTCGACACCACCACGCCTTCGTTCGAA
GAGGTGTGATAGATAACGTTGTTGAGCTGCTGTAGTATTGCTGTGGTGAT
CAACGAAGTCCACGGACAAAGACATACTGCATATATTTTGGGCTGGCTCC
CGTTTTCTTTCTTCGAGACAAGAGAGCTCAGCACAGCCAGTACCCGCTGG
CGCAGATACCAGCTGCCAACCGTGTCCCTCAGC ATGACTTTGCAAGACCT
ACCAGCCAGCGCGCTGTATCCTTTGGTGCATGGGTTTCTCTCG GTGAGCA
GAAAGTAGCTTGGCGAATGAATGAGTGCTGTACGGTGCCGTTGCAACTAG
TGAGTTCTCTTAGGCTTGTTTTAGGGCTGGAAGGCGATTTGCGTGCATGT
TTGAACTTCTGGCTGGCTGTGTATACTCTCTCTAGAGGGTGCAAATAGTG
GCCTTAAATACTGGGAAACAGATGCTGTTATTGGCAAACTTAGATGCAGC
CTCTTTGAGCTTTGCGCACCCGCTTGAGCATATCTATGATTCGTAATATA
GGATAGCTCTCATTCGTTTGGTGCAAATATTCGAGGTTGCTCTGTCCCAC
GTCGAACTAGCATACTATGATATAATAGATACCAGCACCTGCCAGATTAC
CAGGTAGCACTCTCAACGGTTTGAAAGGACTGCAACCCAGCCTTACTGCC
TTGTGGAAACGTGAGGAGTTTATTGGCGACAGTGCTGTGTTTTCATTTCA
AAGCGTTTCCATGCCATGTTATTTGCATTTCACCACACCCTGCAACTTGG
ATGCGATTGCCGACAAAACTGTTTGACGATACGATGATTGTAGGTGTGTC
GTGCGCACTTGATGAAGCATCAGTCAACCATCGACCGGCTACACAGCAAA
CCAGTGTTCTGGTTTTTGTCTGATTTGGCATATGGATGTCAACGCGGGAT
GTAATGAGGTCTATACTTGGGAATGGATATTCGAGCGTCTGGAATCAGCA
TCGCTTTTCTGCCGGCACTAGTACCGAATAAAAAGTCGAAAGCGTAACAG
TAACCCAGATCAAGTCATTTTTCAACAGGACTGAATTCCAGTTTTTGTAG
AAGTGTCGCATTGGTCTTAGAGGCATGCGGCTAATCAATGGGCTCACTGT
CAGCTGTACTGCCTTTATACATTGTACACTAGGCGCATAATGTACGGTAC
AACCGTGCAGTCAGTTAGTTTTACCCTGATAAACTTGCCAGCCCAAGTCT
ACCGGATTAAACTCACGCCGCCCAGTTGTTCTGCGCTCGCAACCCGTTGT
GTATCGCCACCGAACCCTGTCCAGGAATGCGGACTTTCGAAGACGTCCAC
GACCTTCCGCAAAGAGGTGGACATGACCGCGAAGAAGCTCTCCAAACAAC
AG GTAACCACCGGAGCTCCACGTACAACGGTATTCAGTATTTCATATTTC
ACTAGAAGTAGAGTGTGACCACAAGTAGCTACCTGCGTCCGTGCAGTCAT
AATCCAGTGCTTATTCTCGACCCACGGACTCGCGGCACCCGCAGTGGGGG
CTCGTCTGGTGAAAAAAACTGCCCACGATGCTCGTATGAAGATTCGTTTT
TCAACACTTACGAGAGTCAAGACTCCGAAAGCTTTTCGGAAACGACGACC
AGGGCATTACCGTATTAAATAACCATCATTAATGTATCTCTACGTGACGT
CCTGTAGAAGCGACCGTTGACGCCGTAAACCAGTAGCGAATTATCAATAT
CAAGTTTGGTACTATAGCTATTTTTTAGCAAGAGAGCTCGATCGGCGCGT
GCACGGCGTTTTTTTGTATGATGAACTGTATTTGGAAATATTGTAGGCTT
ATTGTGCGCAACCTACCTCGCATTTGCTAATGTTACCATGTTGCATTAAT
TGGTAAGTAGGAACTACACCTTCATATGTTGGTGAAACCATGCGCCAAAT
AACCTGGGGAGGTGTGGTTTAGTCTCCTAGCGTATTGGAATCATATCAGG
CTTTACCTTTACCTGGGCGATCTTTGGCTAGGACTTGAAGAATTTTGGCG
GTGTCACCTGCTCTACTACTGTACGGTACTGTAAAAACGATCGCAACATT
CGTCGAATTCTACAAAACGTGGTTTTCCATCCACGCAACACAAAAGCTGT
TCAGATTCACCAGTAGCGCATGTCAGCATACATTCAATTTCACTGCTGGT
TCCTACCTAGATCCCATAAAAAGTGATGCACAAGATACATGATAAAACAT
CCGACCTCCGAATCGATGCTCTCTCCGCAAAATCTAAAACAAAACAAACG
CACGGATGACGTCACGAAGACGGCCTTGGGAATTGAGCACGATCTTTTGG
AGATCGTGAACATATACCGCAAGACCATGGTAAAGGTGGAGGAGGCGGAA
TCGAGCAGCAGCGACGAGGAGGAGGAAAATGATGAAACGGACGATGGCAG
CAATGAAGAGGAAGAGAAAGAAGAAATACGTAATATGAATGACAACGTGA
AGAAAACAGCGGTTGCGGAGATACCGGCGGCAGCGGAGCGGGCCGAAGAT
TCTGATGAAGAATCTAGCAGTGACGAAGAAGAGGGAGTGGAAGCAGAAAA
GGTCCAGATCCAGAGCAACGGCGATTCGAGAAAAGAAAAGAAAGCAGAAA
AGCATTCGGTGGAAACGAAGACGGAGACTGAATCTGATAGCAGCAGCAGC
GAGGACGAAAGCAGTGCTGATGAGGAAGAAGGAAAAAAGCAGAGCAAATC
TAAAGGCACCATCGTAGTAGCGAAAAACGGTGCGAGGGGAAAAAAGAAGG
CGGAGGTCGAGTCCAGTAGCAGCAGCAGTGATGAGGAAGGCAGTGACGAT
GAAAAGGAGGAGGAGGAAGTAAAAGAAAAGAAGACGAAGGAGGGGAAAAA
AGACGAAAAGAAGACGAAGGAGGAAGTAAAAGAAAAGAAGATGAAAGAGG
GGAAAAAAGACGAAAAGAAGACGAAGGAGGAAGTAAAAGAAAAGAAGATG
AAAGAAGGGAAAAAAGACGAAAAGAAGACAAAGGAGGAAGTAAAAGAAAA
GAAGACAAAGGAGGGAAAAAAAGACGAAAAGAAGACGAAGGAGGAAGTAA
AAGAAAAGAAGACAAAGGAGGGGAAAAAAGACGAAAAGAAGACAAAGGAG
GGAAAAAAAGACGAAAAGAAGGCGAAGGAGGAAGTAAAAGAAGAAAAGAA
GATGAAAGAAGGGAAAAAAAAAGAAAAGGTGAAGGAAGGGAAAAAGGCAA
AAGCCGATGCCACAGTAATAGCGGCAATAACCAACGGTGGAAAGAAGGCA
GCAAAGAAGTCGGCCGAAAAGGAGGCGAAGGTTGAGCCCAGTAGCAGTAG
CAATAGCAGCGACGACGACGACGACGACGACGACGACAACGATGAAAGCA
GCGACAGTGAGGAAGAAGAGGAACAGGTGAAAGAAACACCGTCGAACAAA
GCAAAAGGCGGCAACGCAGCGGTAGTAGCAAAGAAAAAGAACGTACCAGC
ACCCGCACCCGCACCGACGCCACCGACTGTTGAAAAAATGGGGACAGAAT
CCAGCAGTAGCGACGAGGAGGAGGGAGGGGACAGTGGCGAGGATGATTCC
GAGCACGATAGCAGTAGCGACGAGGAGGAGGGAGAGGACAGTGGCGAGGA
TGATTCCGAGCACGATAGCAGTAGCGACGAGGAGGAGGAGGAGGAGGAGG
AAGTGAAACCGCCGACCCCGGCAAGCGCAAAGCAGCGCCCCCAAAAGAGG
AAGGCGGTGGCGGCTGCGGAAGCGGAAGACTCTGAGGATGATGCCGAAGA
AGGAAGTGATGACGAGACGCCCGCCGTGGCGCCCCCAGCCAAGAAGCGCA
AAAAG GTGAATGCCCTTGTTGATAATAGTGTTGTAGTAGTACAAGCTAGT
CTCGGGAAGAACCGCGAGATTTTGTTTTGACGAGATTTTTCAGATGTACT
AATATATATATATATATATAGCCATATCTCGATTTGATTTTCAGGAAAAA
AATGAAGACAGCAGCGTGGTGCATTTGATGTAATGAGTCGTAATTCATCT
TATATATATATATATATATATATACATGTCATTCACCAGGAGAGGGATTC
GGTCTTCGACTTCTGCTTTTTGTTGGATTGTAAGAATTGGAAGCCTACAT
TTCGCTGATTTGTTGTAAATTGGGACTGCGAAAAAAATGTGTACACTTTC
CCCTTTTCGTACATGTTGGCTCTCGGAACACACAGGGCACGAATTGCACA
AGACAAAAGAGACAGGAAAATGAGTAATAACTCCAACCGTTGTCACTATG
AGGCCAAAATACAACTGTCATCATTTTCCGAACATTTCGAGAAAATTCTG
CAGCTCACCTACACTGACAATACACTGCACTGCACAAACCGATCGGACGT
TGCAGGTGGACGCAGAGCCCGCTAAAGCAATTGCTGCACCCAAGGCAGTG
GAGGAGGACAGCGATGATGATAGCAGTAGCAGCGACAGCGACAGCGACGA
GGACTTTGATGATTCCGACGATTCCGAAAATTCCGATTCATCCTCGGAAG
ACGAAGAAGACGTGAGCCAACATCTCGTTATACCCACAGTTCGTGGACGT
TCTGCCAGCCATCCTCGCTCCCGATTAAGCAGCGGATTTTAA GAGGCACA
GTTTGTTGACTATTCGGTTGTCGTGTATTGGACAGGAAGGGTTGAGAGAA
TTTTACAGTGCCGTTCGATAGTGGGGTGCGAGGACAGGTGCCGGGTGTGT
TATGGATAAGAGAGTAGAGATTTTTTATTTACTGGTATGTTCAAATTATC
TCGCTCCCGGTACGCGAGTGAGTTCACGGTGTATAGCAGTATCTACCGCT
GCCAAACGTGAGTCATGATGTGCACGGAGCATGTACTAACTACTAGTACA
GTCAGTGCAAGTAGTCCGTTGCTCGATGGACTTGTGTATTGATGTGCAGC
AAAGAAACAGGGAAGGAGTTAGGTTTTCGTTATGCGGGTATTTCTGAGGT
TCAATCAATCGCATGTATATGCCGAGGAAATAGAGCTAGATTGTTTATTG
CTTGGATAAAAGAGTGAGGCATCACAGAACAAGACTGCATTTTTCCCTTG
TACTATTTTTTTCGATGTAAAATTCAT back to top Coding sequence (CDS) from alignment at H-paniculata_contig95:48860..53986+
>mRNA_H-paniculata_contig95.17238.1 ID=mRNA_H-paniculata_contig95.17238.1|Name=mRNA_H-paniculata_contig95.17238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3822bp|location=Sequence derived from alignment at H-paniculata_contig95:48860..53986+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top