mRNA_H-paniculata_contig9496.17233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9496.17233.1 vs. uniprot
Match: A0A6H5L3A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A7_9PHAE) HSP 1 Score: 174 bits (440), Expect = 2.460e-44 Identity = 152/317 (47.95%), Postives = 178/317 (56.15%), Query Frame = 1 Query: 541 FVIRQLSRVIVGCAHLLRLRGAIGEAEEHALRVMSERGSPALLAAVEAYGANQDLEDLLDTLTTAAQVELSLTNKADA--SNRVAS------------NSTVHRRTGRRRDTGGSRRKRGYAWQHWHQQQQDHQQERRGDGTNPVSFGYVSGVSPCDRAESTEAVTEN--SDEAGSNGSNRRRRTAAGVRAQELVAAKFAGMRAAAXXXXXXXXXXXXXXXXXXXSCASGKAPPANA---------EPSGDKRLRQNVSQLISSMTKHGMLTDRQRLFLLAQVGRRITDQARERHTEYEKTGDSRRLYAGLMALAMP 1416
V+ QL RV+ GC+ LLRLRG IGE EE AL+ MS RGSP LLAAVEAYGANQDLEDLLDTL TAA++ELSLT A A R A + G GG G R G G S G S ++A E+ S A + A G RAQEL+ A+FAGM++AA XXXXXXXXXXXXXXXX EPSGD+RLRQ+VSQL++ M K GMLTDRQRLFLLAQ+GRRIT RE+H +Y TG+S+ LYA L+AL+MP
Sbjct: 1 MVVGQLCRVVAGCSQLLRLRGVIGEREERALKTMSNRGSPVLLAAVEAYGANQDLEDLLDTLQTAAEIELSLTAAAAAVPETRRADPXXXXXXXXXXXXXXLPSGVGAGGGRGGLDLGCGSGV------------SRDGGGRAQASVGVSSDGESXXXGRGSDATGESIWSRPAAEVKTPAAAAAAVGARAQELMKARFAGMKSAAEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSGDRRLRQDVSQLVAVMAKQGMLTDRQRLFLLAQMGRRITRTTREKHAQYLATGNSKELYAVLIALSMP 305
BLAST of mRNA_H-paniculata_contig9496.17233.1 vs. uniprot
Match: D7FW92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW92_ECTSI) HSP 1 Score: 151 bits (381), Expect = 1.540e-34 Identity = 117/292 (40.07%), Postives = 136/292 (46.58%), Query Frame = 1 Query: 541 FVIRQLSRVIVGCAHLLRLRGAIGEAEEHALRVMSERGSPALLAAVEAYGANQDLEDLLDTLTTAAQVELSLTNKADASNRVASNSTVHRRTGRRRDTGGSRRKRGYAWQHWHQQQQDHQQERRGDGTNPVSFGYVSGVSPCDRAESTEAVTENSDEAGSNGSNRRRRTAAGVRAQELVAAKFAGMRAAAXXXXXXXXXXXXXXXXXXXSCASGKAPPANAEPSGDKRLRQNVSQLISSMTKHGMLTDRQRLFLLAQVGRRITDQARERHTEYEKTGDSRRLYAGLMALAMP 1416
V+ QL RV+ GC+ LLRLRG IGE EE L+ MS RGSP LLAAVEAYGANQDLEDLLDTL TAA++ELSLT D RR HQ S + G R + + GV + E GK EPSGD+RLRQ+VSQL++ M K GMLTDRQRLFLLAQVGRRIT RE+H +Y TG+S+ LY LMAL+MP
Sbjct: 446 MVVGQLCRVVAGCSQLLRLRGVIGEREERTLKTMSNRGSPVLLAAVEAYGANQDLEDLLDTLQTAAEIELSLTAAXXXXXXXXXXXXXXXXXXXXXDPXQQRRA------------LPHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRDGGG-----RAQASVGVSSDE------------------------------------GK------EPSGDRRLRQDVSQLVAVMAKQGMLTDRQRLFLLAQVGRRITRTTREKHAQYLATGNSKELYTVLMALSMP 678 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9496.17233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9496.17233.1 >prot_H-paniculata_contig9496.17233.1 ID=prot_H-paniculata_contig9496.17233.1|Name=mRNA_H-paniculata_contig9496.17233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=679bp QNLQRLPSLLERDRVSSSGAACYNGDTDRSQQQPPIPGGEWEPSTSLLEQback to top mRNA from alignment at H-paniculata_contig9496:5350..9216- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9496.17233.1 ID=mRNA_H-paniculata_contig9496.17233.1|Name=mRNA_H-paniculata_contig9496.17233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3867bp|location=Sequence derived from alignment at H-paniculata_contig9496:5350..9216- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9496:5350..9216- >mRNA_H-paniculata_contig9496.17233.1 ID=mRNA_H-paniculata_contig9496.17233.1|Name=mRNA_H-paniculata_contig9496.17233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4074bp|location=Sequence derived from alignment at H-paniculata_contig9496:5350..9216- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |