mRNA_H-paniculata_contig9494.17231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9494.17231.1
Unique NamemRNA_H-paniculata_contig9494.17231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 3.010e-90
Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = 1 
Query:    1 VCLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510
            VCLKYVVLANMLDLS INPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRIT+DPFVMTYL PLR+RIRESVL+HL +PY+KITM FMAGEL+LK +EVE LLIDLILDRRLNGKIDQI+G+LLL+   +T++SRKHDA+ERWS SLRSL+S V  RV
Sbjct:  187 VCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPLETTTSRKHDAMERWSNSLRSLSSFVAARV 356
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 5.290e-88
Identity = 140/170 (82.35%), Postives = 158/170 (92.94%), Query Frame = 1 
Query:    1 VCLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510
            VCLKYVVLANMLDLS INPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRIT+DPFVMTYL PLR+RIRESVL+HL +PY+KITM FMAGEL+LK +EVE LLI+LILDRRLNGKI+QI+G+LLL+  ++T++SRKHDA+ERWS SLRSL+S V  RV
Sbjct:  279 VCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTTEVEKLLINLILDRRLNGKINQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARV 448
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A836CJA4_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA4_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.470e-62
Identity = 103/169 (60.95%), Postives = 134/169 (79.29%), Query Frame = 1 
Query:    4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510
            CLKYVVLANML LSDINPFAAREAKV+QEEKE+ AMM+LRMAYE NDLA+FE+TL +K NRI DD F+M Y++PL+RR+RE VLL + RPY++I ++FMA ELNL    VE LL++LILD RL+G IDQ+QG+L + +    +S +K++AL  WS+ LR  T+ +  R+
Sbjct:  239 CLKYVVLANMLALSDINPFAAREAKVYQEEKEVAAMMELRMAYETNDLARFEKTLQNKANRILDDNFIMAYVEPLKRRMREQVLLAIVRPYRRINLAFMARELNLPEPAVEGLLVELILDERLSGSIDQLQGFLQVGEDDADNSPKKYEALMGWSDELRKATTALTSRI 407
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK)

HSP 1 Score: 203 bits (516), Expect = 1.480e-60
Identity = 97/169 (57.40%), Postives = 136/169 (80.47%), Query Frame = 1 
Query:    4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510
            CLKYVVLANML LSDINPFAAREAKV+QE++EI AMM LR AY+ N+LAKFERTL + RNRI DDPF+M+Y++PLR ++RE VL+ L +PY K++M F++ EL ++  EVE L++++ILD R  GKIDQI G L+L   KQ+ +++K++AL+RWS++L  L + + +++
Sbjct:  279 CLKYVVLANMLALSDINPFAAREAKVYQEDREITAMMALRQAYDANELAKFERTLREDRNRILDDPFIMSYIEPLRHKMREQVLISLVQPYNKVSMKFLSQELKMEGKEVEQLIVNMILDGRFEGKIDQINGVLVLGGQKQSIATKKYEALQRWSDALEGLRNALPQKI 447
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2B813_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B813_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.860e-60
Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:    7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510
            LKYVVLANML LSDINPFAA EA  +QEEKEI+AM  LR AYE NDL  FER L DKRNRI  DPF+M Y++PL+RR+RE VLL L +PY +I + F+A EL L+ SEVE LL+D+ILD+R+ GKIDQI G+LLL         +K+DALE+W+ +L SL  ++  RV
Sbjct:   30 LKYVVLANMLALSDINPFAAPEALAYQEEKEIIAMRALRSAYEANDLVSFERALLDKRNRIISDPFIMQYVEPLQRRMREQVLLVLVKPYHRIRVEFVAAELKLEVSEVELLLVDMILDKRVFGKIDQINGFLLLGGESDNVVEKKYDALEKWTNTLSSLNKNLGARV 197
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA)

HSP 1 Score: 199 bits (506), Expect = 7.890e-59
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:    7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510
            LKYVVLANML LS+INPF+AREA  +QE+ EIVAM +LR AYE NDL  FE+TL DK N+I  DPF+MTY++PLRRR+RE VLL L RPY++I + F+A EL L+   VE LL+D+I+D+R++GKIDQIQG+LLL   + + SS+K+DALE+W  +L SLT+++  RV
Sbjct:  305 LKYVVLANMLALSEINPFSAREAIAYQEDPEIVAMRNLRSAYEANDLGSFEKTLLDKSNKIIADPFIMTYVEPLRRRMREQVLLALLRPYKRIRIEFVAQELKLEVMAVELLLVDMIMDKRIDGKIDQIQGFLLLSGDQTSVSSKKYDALEKWCTTLESLTNNLSARV 472
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.180e-56
Identity = 102/160 (63.75%), Postives = 122/160 (76.25%), Query Frame = 1 
Query:    7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSL 486
            LKYVVLANML LSDINPFAAREA  FQEEKEIVAM  LR AYE NDL  FE TL DK NRI +DPF+MTY+ PLRRR+RE VLL L RPY +I +SF+A EL L   EVE L++D+IL+ R+ GKIDQI+G+LLL D     + +K DA+  W++SL +L
Sbjct:  327 LKYVVLANMLALSDINPFAAREAIAFQEEKEIVAMRSLRTAYEANDLTTFESTLKDKSNRILEDPFIMTYVAPLRRRMREQVLLALVRPYHRIQLSFIARELELSDEEVERLVVDMILEGRVQGKIDQIKGFLLLGDRSNVLAVKKFDAMASWAKSLEAL 486
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2V3G5_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3G5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.810e-53
Identity = 97/185 (52.43%), Postives = 131/185 (70.81%), Query Frame = 1 
Query:    4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDS----------------KQTSSSRKHDALERWSESLRSLTSHVVERV 510
            CLKYVVLANML LSDINPFAAREAKV+Q+ +EI+ MM+LR AY+ +DL +FERTL D+RNRI DDPF+M Y+ PLR+R+RE V+L L RPY+ I +  +A EL  +  EVE +++ +ILD RL+GKIDQI   LLL  S                  +S+++K+DAL +W+ S+ SL+  + ER+
Sbjct:   33 CLKYVVLANMLALSDINPFAAREAKVYQDAQEILGMMELRAAYDASDLGRFERTLRDRRNRILDDPFIMAYVAPLRQRMREQVVLRLCRPYKCILLKTLAKELAQEVQEVEKIVVAMILDGRLSGKIDQIAQALLLNKSFGSTAGSSSSETGSALTLSSNTKKYDALNQWTASVESLSQCIGERM 217
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S3M6V7_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6V7_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.740e-53
Identity = 89/138 (64.49%), Postives = 119/138 (86.23%), Query Frame = 1 
Query:    7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDS 420
            LKYVV+A+ML +SDINPFAAREAKVF ++KEIVAM DLR   E NDLA+FERT+ +K+N+I D+PF+MTY+ PLRRR+RE VLL+LTRPY+K+T++F+A EL L   EVE+LL+D+ILD++L+  IDQI+G+++LE S
Sbjct:  187 LKYVVVASMLTVSDINPFAAREAKVFSDDKEIVAMSDLRQCLEANDLARFERTIKNKQNKILDEPFLMTYIQPLRRRMREQVLLNLTRPYKKVTVAFLARELALNVDEVESLLVDMILDQKLSAHIDQIKGHVILEQS 324
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BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: W7U093_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U093_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.070e-50
Identity = 90/162 (55.56%), Postives = 126/162 (77.78%), Query Frame = 1 
Query:    4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLT 489
            CLKY  L+N+L  S INPFAA EAKV+Q+++E++AMM+LR+AY+ NDL +FERTL  K N I DD F+  Y++ LRRR+RE VLL +T+PY K+T++ +A EL L R E+E+LL+DLILD+R+ G+IDQI G++LL    + SSS KH AL RW+++L++ T
Sbjct:  281 CLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFERTLEHKPNHILDDSFMAVYIEELRRRMREQVLLSITQPYSKMTLAHVAKELRLSREEIESLLVDLILDKRIKGQIDQIGGFVLLRPEGR-SSSGKHAALARWADALQAGT 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR5_ECTSI3.010e-9083.53COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A6H5JKQ1_9PHAE5.290e-8882.35COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A836CJA4_9STRA1.470e-6260.95COP9 signalosome complex subunit 2 n=1 Tax=Tribone... [more]
A0A6V1ITC2_HETAK1.480e-6057.40COP9 signalosome complex subunit 2 n=1 Tax=Heteros... [more]
A0A7S2B813_9STRA2.860e-6060.71COP9 signalosome complex subunit 2 n=1 Tax=Florenc... [more]
A0A7S2BKS2_9STRA7.890e-5960.71COP9 signalosome complex subunit 2 n=1 Tax=Dictyoc... [more]
A0A7S2W4K8_9STRA4.180e-5663.75COP9 signalosome complex subunit 2 n=2 Tax=Rhizoch... [more]
A0A7S2V3G5_9STRA1.810e-5352.43COP9 signalosome complex subunit 2 n=1 Tax=Fibroca... [more]
A0A7S3M6V7_9STRA5.740e-5364.49COP9 signalosome complex subunit 2 n=1 Tax=Spumell... [more]
W7U093_9STRA1.070e-5055.56COP9 signalosome complex subunit 2 n=2 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9494contigH-paniculata_contig9494:213..1634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue4.4e-67
Seed eggNOG ortholog2880.D7FRR5
Preferred nameCOPS2
KEGG koko:K12176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
Ec32 ortholog descriptionPCI domain protein
Ec32 orthologEc-00_003560.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons3
Model size519
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9494.17231.1prot_H-paniculata_contig9494.17231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9494 243..1634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.1655593-UTR-H-paniculata_contig9494:212..2421622931180.1655593-UTR-H-paniculata_contig9494:212..242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9494 213..242 +
1691481626.6038005-UTR-H-paniculata_contig9494:212..2421691481626.6038005-UTR-H-paniculata_contig9494:212..242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9494 213..242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.1854846-CDS-H-paniculata_contig9494:242..2921622931180.1854846-CDS-H-paniculata_contig9494:242..292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9494 243..292 +
1691481626.615427-CDS-H-paniculata_contig9494:242..2921691481626.615427-CDS-H-paniculata_contig9494:242..292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9494 243..292 +
1622931180.198338-CDS-H-paniculata_contig9494:984..12101622931180.198338-CDS-H-paniculata_contig9494:984..1210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9494 985..1210 +
1691481626.623905-CDS-H-paniculata_contig9494:984..12101691481626.623905-CDS-H-paniculata_contig9494:984..1210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9494 985..1210 +
1622931180.2743735-CDS-H-paniculata_contig9494:1421..16341622931180.2743735-CDS-H-paniculata_contig9494:1421..1634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9494 1422..1634 +
1691481626.632127-CDS-H-paniculata_contig9494:1421..16341691481626.632127-CDS-H-paniculata_contig9494:1421..1634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9494 1422..1634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9494.17231.1

>prot_H-paniculata_contig9494.17231.1 ID=prot_H-paniculata_contig9494.17231.1|Name=mRNA_H-paniculata_contig9494.17231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKR
NRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSE
VEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLR
SLTSHVVERVNW*
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mRNA from alignment at H-paniculata_contig9494:213..1634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9494.17231.1 ID=mRNA_H-paniculata_contig9494.17231.1|Name=mRNA_H-paniculata_contig9494.17231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig9494:213..1634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGTTTGAAGTACGTGGTGCTGGCGAACATGCTGGACCTGTCGGACAT
CAACCCATTCGCGGCGAGGGAGGCGAAAGTGTGAGTTACGAGAGTAGAGT
AGAGAATATTAGAGTACGTTGGGATAGAGCGAAGAAAGAAACGGTTAATT
GTACTGTTCTCTAGCCTTGTTGTGTATTTTGACGGCGCCGCACGTAGGCA
TTACCAGGAAGGAAGGGTCAACCAGAGTGTCGAACGCCAGCAAGAAGTGT
TTTTTTGGTCCGTTTTCTCTGAGAATTTTTCCCGTTCCACATCGACTGTT
GTTTCCATGTTCGAGTTTCGGTTGGATCATGCTTTCCTACAACTGTGATG
GGAGAATGTAGCACAGTACTACAATATCTTGGAACCCCTTCCCGCCACTG
TAGTGCCCAAAATGTTGACGATCCATAAGAACAAAATCACCGAGAAAAAA
AAGCCATTCGCATTTCATAACCCTGTCTCGGTACCTATGGTGTAGGGTTC
TTGACCGCGTTTTTTGGGTCTCCCCTTCCGGACCTATTTGTGTTGAGTTA
GGTCTTGTATTTTCCACGCCTTGTGACTATATATTCAACTCCTGCTGCCG
TCAAGAACACGCCAAAAATGAAATCAAATTGAATTCAAATAAGTACGTAA
CACATTCTGTAGGCATTATACAGATTATTGTTCCGAAAAATAAACAAGCA
CAAGCGTGAGAAAAAACAAATAAACGAAAACGTCTTGTTCTGCAAACATC
ACGCGCTCGCGCAAAAAAAAAGGTTTCAAGAGGAGAAGGAAATCGTGGCA
ATGATGGACCTGCGGATGGCTTACGAGGGCAACGACCTGGCCAAGTTTGA
ACGCACCCTACATGACAAACGGAACCGAATCACGGATGACCCATTCGTGA
TGACGTACCTCGACCCGTTAAGGCGACGCATCCGAGAGTCAGTGCTCCTG
CACCTGACGCGGCCGTACCAAAAGATCACAATGTCGTTCATGGCCGGGGT
AAGGAAGCTCTCGGCAAGTGGTTTTTCGCGTCAACGTTGTTTCTCATACA
TTCGTTGTTCGACAAAACTTGGGCCAAATAGCGTAAGAAAGATTGGAGCA
AATTTTTGCGATCGGAATTGTCTTTCGCTATTCATTTTCACTTATTTTGT
TTGTTTGTTTATCGATGGCTCTGTTTTCATCTTGTTTCTTTTTTTTGCGC
TCCTGGCAGGAGTTAAACTTAAAGCGATCTGAGGTGGAGGCCTTGCTGAT
CGACCTCATCTTGGATCGACGGTTGAACGGGAAAATCGACCAGATACAGG
GCTATTTGCTGCTGGAAGACTCTAAGCAGACTTCCTCTTCCAGAAAGCAC
GACGCGCTCGAGCGGTGGAGCGAGTCACTTCGATCTCTCACTTCTCACGT
CGTCGAGCGTGTTAATTGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9494:213..1634+

>mRNA_H-paniculata_contig9494.17231.1 ID=mRNA_H-paniculata_contig9494.17231.1|Name=mRNA_H-paniculata_contig9494.17231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig9494:213..1634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGACCTGTCGGACATCAACCCATTCGCGGCGAGGGAGGCGAAAGT
ATGCTGGACCTGTCGGACATCAACCCATTCGCGGCGAGGGAGGCGAAAGT
GTTTCAAGAGGAGAAGGAAATCGTGGCAATGATGGACCTGCGGATGGCTT
ACGAGGGCAACGACCTGGCCAAGTTTGAACGCACCCTACATGACAAACGG
AACCGAATCACGGATGACCCATTCGTGATGACGTACCTCGACCCGTTAAG
GCGACGCATCCGAGAGTCAGTGCTCCTGCACCTGACGCGGCCGTACCAAA
AGATCACAATGTCGTTCATGGCCGGGGTTTCAAGAGGAGAAGGAAATCGT
GGCAATGATGGACCTGCGGATGGCTTACGAGGGCAACGACCTGGCCAAGT
TTGAACGCACCCTACATGACAAACGGAACCGAATCACGGATGACCCATTC
GTGATGACGTACCTCGACCCGTTAAGGCGACGCATCCGAGAGTCAGTGCT
CCTGCACCTGACGCGGCCGTACCAAAAGATCACAATGTCGTTCATGGCCG
GGGAGTTAAACTTAAAGCGATCTGAGGTGGAGGCCTTGCTGATCGACCTC
ATCTTGGATCGACGGTTGAACGGGAAAATCGACCAGATACAGGGCTATTT
GCTGCTGGAAGACTCTAAGCAGACTTCCTCTTCCAGAAAGCACGACGCGC
TCGAGCGGTGGAGCGAGTCACTTCGATCTCTCACTTCTCACGTCGTCGAG
CGTGTTAATTGGTAGGAGTTAAACTTAAAGCGATCTGAGGTGGAGGCCTT
GCTGATCGACCTCATCTTGGATCGACGGTTGAACGGGAAAATCGACCAGA
TACAGGGCTATTTGCTGCTGGAAGACTCTAAGCAGACTTCCTCTTCCAGA
AAGCACGACGCGCTCGAGCGGTGGAGCGAGTCACTTCGATCTCTCACTTC
TCACGTCGTCGAGCGTGTTAATTGGTAG
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