mRNA_H-paniculata_contig9494.17231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI) HSP 1 Score: 276 bits (706), Expect = 3.010e-90 Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = 1 Query: 1 VCLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510 VCLKYVVLANMLDLS INPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRIT+DPFVMTYL PLR+RIRESVL+HL +PY+KITM FMAGEL+LK +EVE LLIDLILDRRLNGKIDQI+G+LLL+ +T++SRKHDA+ERWS SLRSL+S V RV Sbjct: 187 VCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPLETTTSRKHDAMERWSNSLRSLSSFVAARV 356
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE) HSP 1 Score: 273 bits (699), Expect = 5.290e-88 Identity = 140/170 (82.35%), Postives = 158/170 (92.94%), Query Frame = 1 Query: 1 VCLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510 VCLKYVVLANMLDLS INPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRIT+DPFVMTYL PLR+RIRESVL+HL +PY+KITM FMAGEL+LK +EVE LLI+LILDRRLNGKI+QI+G+LLL+ ++T++SRKHDA+ERWS SLRSL+S V RV Sbjct: 279 VCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTTEVEKLLINLILDRRLNGKINQIEGFLLLDGPQETATSRKHDAMERWSNSLRSLSSFVAARV 448
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A836CJA4_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA4_9STRA) HSP 1 Score: 207 bits (527), Expect = 1.470e-62 Identity = 103/169 (60.95%), Postives = 134/169 (79.29%), Query Frame = 1 Query: 4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510 CLKYVVLANML LSDINPFAAREAKV+QEEKE+ AMM+LRMAYE NDLA+FE+TL +K NRI DD F+M Y++PL+RR+RE VLL + RPY++I ++FMA ELNL VE LL++LILD RL+G IDQ+QG+L + + +S +K++AL WS+ LR T+ + R+ Sbjct: 239 CLKYVVLANMLALSDINPFAAREAKVYQEEKEVAAMMELRMAYETNDLARFEKTLQNKANRILDDNFIMAYVEPLKRRMREQVLLAIVRPYRRINLAFMARELNLPEPAVEGLLVELILDERLSGSIDQLQGFLQVGEDDADNSPKKYEALMGWSDELRKATTALTSRI 407
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK) HSP 1 Score: 203 bits (516), Expect = 1.480e-60 Identity = 97/169 (57.40%), Postives = 136/169 (80.47%), Query Frame = 1 Query: 4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510 CLKYVVLANML LSDINPFAAREAKV+QE++EI AMM LR AY+ N+LAKFERTL + RNRI DDPF+M+Y++PLR ++RE VL+ L +PY K++M F++ EL ++ EVE L++++ILD R GKIDQI G L+L KQ+ +++K++AL+RWS++L L + + +++ Sbjct: 279 CLKYVVLANMLALSDINPFAAREAKVYQEDREITAMMALRQAYDANELAKFERTLREDRNRILDDPFIMSYIEPLRHKMREQVLISLVQPYNKVSMKFLSQELKMEGKEVEQLIVNMILDGRFEGKIDQINGVLVLGGQKQSIATKKYEALQRWSDALEGLRNALPQKI 447
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2B813_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B813_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.860e-60 Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = 1 Query: 7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510 LKYVVLANML LSDINPFAA EA +QEEKEI+AM LR AYE NDL FER L DKRNRI DPF+M Y++PL+RR+RE VLL L +PY +I + F+A EL L+ SEVE LL+D+ILD+R+ GKIDQI G+LLL +K+DALE+W+ +L SL ++ RV Sbjct: 30 LKYVVLANMLALSDINPFAAPEALAYQEEKEIIAMRALRSAYEANDLVSFERALLDKRNRIISDPFIMQYVEPLQRRMREQVLLVLVKPYHRIRVEFVAAELKLEVSEVELLLVDMILDKRVFGKIDQINGFLLLGGESDNVVEKKYDALEKWTNTLSSLNKNLGARV 197
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA) HSP 1 Score: 199 bits (506), Expect = 7.890e-59 Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 1 Query: 7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLTSHVVERV 510 LKYVVLANML LS+INPF+AREA +QE+ EIVAM +LR AYE NDL FE+TL DK N+I DPF+MTY++PLRRR+RE VLL L RPY++I + F+A EL L+ VE LL+D+I+D+R++GKIDQIQG+LLL + + SS+K+DALE+W +L SLT+++ RV Sbjct: 305 LKYVVLANMLALSEINPFSAREAIAYQEDPEIVAMRNLRSAYEANDLGSFEKTLLDKSNKIIADPFIMTYVEPLRRRMREQVLLALLRPYKRIRIEFVAQELKLEVMAVELLLVDMIMDKRIDGKIDQIQGFLLLSGDQTSVSSKKYDALEKWCTTLESLTNNLSARV 472
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA) HSP 1 Score: 192 bits (489), Expect = 4.180e-56 Identity = 102/160 (63.75%), Postives = 122/160 (76.25%), Query Frame = 1 Query: 7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSL 486 LKYVVLANML LSDINPFAAREA FQEEKEIVAM LR AYE NDL FE TL DK NRI +DPF+MTY+ PLRRR+RE VLL L RPY +I +SF+A EL L EVE L++D+IL+ R+ GKIDQI+G+LLL D + +K DA+ W++SL +L Sbjct: 327 LKYVVLANMLALSDINPFAAREAIAFQEEKEIVAMRSLRTAYEANDLTTFESTLKDKSNRILEDPFIMTYVAPLRRRMREQVLLALVRPYHRIQLSFIARELELSDEEVERLVVDMILEGRVQGKIDQIKGFLLLGDRSNVLAVKKFDAMASWAKSLEAL 486
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S2V3G5_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3G5_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.810e-53 Identity = 97/185 (52.43%), Postives = 131/185 (70.81%), Query Frame = 1 Query: 4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDS----------------KQTSSSRKHDALERWSESLRSLTSHVVERV 510 CLKYVVLANML LSDINPFAAREAKV+Q+ +EI+ MM+LR AY+ +DL +FERTL D+RNRI DDPF+M Y+ PLR+R+RE V+L L RPY+ I + +A EL + EVE +++ +ILD RL+GKIDQI LLL S +S+++K+DAL +W+ S+ SL+ + ER+ Sbjct: 33 CLKYVVLANMLALSDINPFAAREAKVYQDAQEILGMMELRAAYDASDLGRFERTLRDRRNRILDDPFIMAYVAPLRQRMREQVVLRLCRPYKCILLKTLAKELAQEVQEVEKIVVAMILDGRLSGKIDQIAQALLLNKSFGSTAGSSSSETGSALTLSSNTKKYDALNQWTASVESLSQCIGERM 217
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: A0A7S3M6V7_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6V7_9STRA) HSP 1 Score: 181 bits (460), Expect = 5.740e-53 Identity = 89/138 (64.49%), Postives = 119/138 (86.23%), Query Frame = 1 Query: 7 LKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDS 420 LKYVV+A+ML +SDINPFAAREAKVF ++KEIVAM DLR E NDLA+FERT+ +K+N+I D+PF+MTY+ PLRRR+RE VLL+LTRPY+K+T++F+A EL L EVE+LL+D+ILD++L+ IDQI+G+++LE S Sbjct: 187 LKYVVVASMLTVSDINPFAAREAKVFSDDKEIVAMSDLRQCLEANDLARFERTIKNKQNKILDEPFLMTYIQPLRRRMREQVLLNLTRPYKKVTVAFLARELALNVDEVESLLVDMILDQKLSAHIDQIKGHVILEQS 324
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Match: W7U093_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U093_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.070e-50 Identity = 90/162 (55.56%), Postives = 126/162 (77.78%), Query Frame = 1 Query: 4 CLKYVVLANMLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITDDPFVMTYLDPLRRRIRESVLLHLTRPYQKITMSFMAGELNLKRSEVEALLIDLILDRRLNGKIDQIQGYLLLEDSKQTSSSRKHDALERWSESLRSLT 489 CLKY L+N+L S INPFAA EAKV+Q+++E++AMM+LR+AY+ NDL +FERTL K N I DD F+ Y++ LRRR+RE VLL +T+PY K+T++ +A EL L R E+E+LL+DLILD+R+ G+IDQI G++LL + SSS KH AL RW+++L++ T Sbjct: 281 CLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFERTLEHKPNHILDDSFMAVYIEELRRRMREQVLLSITQPYSKMTLAHVAKELRLSREEIESLLVDLILDKRIKGQIDQIGGFVLLRPEGR-SSSGKHAALARWADALQAGT 441 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9494.17231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9494.17231.1 >prot_H-paniculata_contig9494.17231.1 ID=prot_H-paniculata_contig9494.17231.1|Name=mRNA_H-paniculata_contig9494.17231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp MLDLSDINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRback to top mRNA from alignment at H-paniculata_contig9494:213..1634+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9494.17231.1 ID=mRNA_H-paniculata_contig9494.17231.1|Name=mRNA_H-paniculata_contig9494.17231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig9494:213..1634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9494:213..1634+ >mRNA_H-paniculata_contig9494.17231.1 ID=mRNA_H-paniculata_contig9494.17231.1|Name=mRNA_H-paniculata_contig9494.17231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig9494:213..1634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |