mRNA_H-paniculata_contig9492.17230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9492.17230.1
Unique NamemRNA_H-paniculata_contig9492.17230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: D7FQZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ5_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 5.000e-71
Identity = 130/200 (65.00%), Postives = 151/200 (75.50%), Query Frame = 3 
Query:   33 YDPYDDRKAPKRAXXXXXXXX-----DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRKKSGRGKQKRPS---RQAPPRYDDDYGYXXXXXXNGGGGWGGYDD 608
            YDPY++R+   ++             DLTGTI +GNKKYG+YALAGSVLLTMMG+SLMFE+NLIRLGNLGFVAGM+LFIGPSNV+RYFTQASKLRG++IF VGFFFVFTGHPI+GLA+EVFGFLNLFGNMLPM+WAMASNMPFIK+I+ SG ++ K              R AP R  DDY Y        GGG+G YDD
Sbjct:  183 YDPYEERRGSSKSGGRGRGKSGAGGFDLTGTIANGNKKYGIYALAGSVLLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIMGSGSSKGKXXXXXXXXXXXXXXRAAPSR--DDYDYDRQ-----GGGYG-YDD 374
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A6H5KWX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX1_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 3.440e-68
Identity = 109/130 (83.85%), Postives = 126/130 (96.92%), Query Frame = 3 
Query:   96 DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRK 485
            DLTGTIT+GNKKYG+YALAGS+LLTMMG+SLMFE+NLIRLGNLGFVAGM+LFIGPSNV+RYFTQASKLRG++IF VGFFFVFTGHPI+GLA+EVFGFLNLFGNMLPM+WAMASNMPF+K+I+ SG ++ K
Sbjct:  263 DLTGTITNGNKKYGIYALAGSILLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIMGSGSSKGK 392
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S1XYC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYC5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.400e-40
Identity = 84/167 (50.30%), Postives = 108/167 (64.67%), Query Frame = 3 
Query:  111 ITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDII-DSGGNQRKKSGRGKQKRPSRQAPPRYDDDYGYXXXXXXNGGGGWGGYDD 608
            +  GNKKYGV  L G  ++TM+G++LMFERNL+RLGNL  VAG+AL +GP  ++RY  Q SKLRGT +F +GF  +  G P VG+ +E+FG +NLFGNM PM+WA+   MP +K++  DSGG   K  GRG  +RP R     YD D GY       G  G  GY D
Sbjct:   39 LKKGNKKYGVVCLGGGTVVTMLGMTLMFERNLMRLGNLLQVAGLALLMGPPRLVRYLLQKSKLRGTTVFSLGFLLMLNGRPFVGMILELFGIINLFGNMFPMVWAVVQRMPIVKELFRDSGG---KAGGRG-ARRPQRG----YDRDSGYDDQQPYGGDDGDRGYYD 197
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A835Z8R7_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.070e-37
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 3 
Query:   96 DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGG 473
            DL   +T G+K +G   +A  VLLT MGISL F + LIRLGNL  V G++L IGPS  ++YFT  +KLRGTIIF +GFF VFTGHPI+G+A EVFGFLNLFGNMLP+L  MA  +P + D+I   G
Sbjct:  520 DLGSVVTKGHKTWGGMCIAAGVLLTGMGISLFFNKFLIRLGNLALVLGVSLLIGPSRCVKYFTHPTKLRGTIIFALGFFLVFTGHPILGIAAEVFGFLNLFGNMLPLLTMMARQLPVVGDLIPQPG 645
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A6V1NTD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NTD6_HETAK)

HSP 1 Score: 142 bits (358), Expect = 1.210e-35
Identity = 70/151 (46.36%), Postives = 98/151 (64.90%), Query Frame = 3 
Query:   99 LTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRKKSGRGKQKRPSRQAPPRYDDDY 551
            L G   +  KKYG   +   +L T++G+SL FE+NL+RLGN+ F+ G AL IGP   + +FT   +LR T  F VG FFV  G P++G+  E+FGFLNLFGNM P++W+M  NMPF++D++   GN  + S  G +++P RQ     DDDY
Sbjct:  120 LGGLAGNKTKKYGFMFVGAGLLFTILGMSLFFEKNLLRLGNVLFLTGAALVIGPGRTVGWFTAKQRLRATGTFAVGVFFVLIGKPVIGMIFEIFGFLNLFGNMFPLVWSMTKNMPFVRDLV---GNSPRSSKGGSRQKPKRQQNYYDDDDY 267
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7R9U9B3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9B3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.080e-34
Identity = 60/142 (42.25%), Postives = 93/142 (65.49%), Query Frame = 3 
Query:   33 YDPYDDRKAPKRAXXXXXXXXDLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDI 458
            Y+  ++R  P+R          ++  +  GNKKYG+  + G  ++TM+GI+LMFE+NL+RLGNL  VAG+AL +GP+ ++ Y  Q SKLRG ++F  GF F+  G   +G  +E+FG +NLFGNM P+LW +   MP ++++
Sbjct:   49 YEEEEERYEPRRQRRPQRDHVGMSA-LRKGNKKYGIMCIGGGTVVTMLGITLMFEKNLMRLGNLLQVAGLALLLGPARLVSYMMQRSKLRGAMVFATGFTFIMNGRSFIGFFLELFGIINLFGNMFPVLWNLVQRMPIVREL 189
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S2XZL7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.610e-32
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 3 
Query:   96 DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRK 485
            D T  +T GNKK G   L    +LTM+G++L FE+NL+RLGNL F+AG++  +GP  +I YF    K RG + F +G   VF GHP++G+ +E FG LNLFGNM P++W+M   MPFI+D++   G+ RK
Sbjct:  123 DATMFLTQGNKKVGFALLGSGSVLTMLGMTLFFEKNLLRLGNLLFLAGVSQVMGPKRMIGYFMAPDKRRGGVTFCLGVVLVFMGHPVLGMLLEFFGILNLFGNMFPIVWSMVKKMPFIRDLV---GDDRK 249
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S1UWW3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWW3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.670e-29
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 3 
Query:   33 YDPYDDRKAPKRAXXXXXXXX---DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSG 470
            YD YDDR +  R+            ++  + +G+K+ G+  L G  +LT++GISL F ++L+R+GNL  V G+ + IGP   + YF Q  K R T     G F VF G P+ G+A+EVFG LNLFGNM P+L A+   MPF+K +   G
Sbjct:   60 YDYYDDRGSSSRSQSPRSSTPLPGGISKILRNGDKRIGMMLLGGGGILTLLGISLFFNKSLLRMGNLLLVGGVPITIGPGRTMGYFFQPKKSRATACLCAGIFLVFIGWPVFGIALEVFGLLNLFGNMFPVLMAVLKQMPFVKSVFGGG 208
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S4NBY5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBY5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.090e-28
Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 3 
Query:    6 RDRGSGGGGYDPYDDRKAPKRAXXXXXXXXDLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRKKSG 494
            R  GSG GG  P    K P+               + +GN+K G+  L+G   LT++G++L F ++L+RLGNL FVAG+ L +GP     YF Q SK R T     G F VF G P+VG+A+EVFG LNLFGNM P+  A+A N+P +  ++ +G   + +SG
Sbjct:  252 RSXGSGNGGGSPLSGVKLPEM--------------MKTGNRKVGLALLSGGAALTLLGVTLFFNKSLLRLGNLLFVAGVPLTLGPGRTAGYFLQPSKARATGCLAAGMFLVFVGWPVVGIALEVFGLLNLFGNMFPVAMALARNVPVLGSLLGNGNGGKSRSG 400
[Close]
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: F0YIZ2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIZ2_AURAN)

HSP 1 Score: 116 bits (290), Expect = 5.470e-28
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 3 
Query:  126 KKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFI 449
            +K G+   A     TM+G+SL FE+NLIRLGN+  VAG  + +GP    RY    +KLRG++ F  GF  + +GHP++G+ VE+FGFLNLFGN+ P+  AM  N+PF+
Sbjct:    1 RKTGLIMCAAGAASTMLGVSLFFEKNLIRLGNVLLVAGAPIVVGPQRASRYVLNPAKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ5_ECTSI5.000e-7165.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWX1_9PHAE3.440e-6883.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XYC5_9STRA1.400e-4050.30Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835Z8R7_9STRA8.070e-3759.52Mitochondrial carrier domain-containing protein n=... [more]
A0A6V1NTD6_HETAK1.210e-3546.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U9B3_9STRA8.080e-3442.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2XZL7_9STRA4.610e-3248.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1UWW3_9STRA6.670e-2941.61Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4NBY5_9STRA1.090e-2841.72Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0YIZ2_AURAN5.470e-2848.15Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9492contigH-paniculata_contig9492:2294..8334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue9.7e-45
Seed eggNOG ortholog2880.D7FQZ5
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0284@1,KOG1743@2759
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Ec32 orthologEc-09_003160.1
EC2.5.1.18
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons6
Model size1284
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9492.17230.1prot_H-paniculata_contig9492.17230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9492 3348..7673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.0164108-UTR-H-paniculata_contig9492:2293..24221622931180.0164108-UTR-H-paniculata_contig9492:2293..2422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9492 2294..2422 +
1691481626.5177274-UTR-H-paniculata_contig9492:2293..24221691481626.5177274-UTR-H-paniculata_contig9492:2293..2422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9492 2294..2422 +
1622931180.0295534-UTR-H-paniculata_contig9492:3306..33471622931180.0295534-UTR-H-paniculata_contig9492:3306..3347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9492 3307..3347 +
1691481626.5305371-UTR-H-paniculata_contig9492:3306..33471691481626.5305371-UTR-H-paniculata_contig9492:3306..3347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9492 3307..3347 +
1622931180.1309376-UTR-H-paniculata_contig9492:7673..83341622931180.1309376-UTR-H-paniculata_contig9492:7673..8334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9492 7674..8334 +
1691481626.5923252-UTR-H-paniculata_contig9492:7673..83341691481626.5923252-UTR-H-paniculata_contig9492:7673..8334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9492 7674..8334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.0530674-CDS-H-paniculata_contig9492:3347..33981622931180.0530674-CDS-H-paniculata_contig9492:3347..3398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 3348..3398 +
1691481626.540422-CDS-H-paniculata_contig9492:3347..33981691481626.540422-CDS-H-paniculata_contig9492:3347..3398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 3348..3398 +
1622931180.0721288-CDS-H-paniculata_contig9492:3710..37761622931180.0721288-CDS-H-paniculata_contig9492:3710..3776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 3711..3776 +
1691481626.5505457-CDS-H-paniculata_contig9492:3710..37761691481626.5505457-CDS-H-paniculata_contig9492:3710..3776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 3711..3776 +
1622931180.0879722-CDS-H-paniculata_contig9492:4556..46691622931180.0879722-CDS-H-paniculata_contig9492:4556..4669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 4557..4669 +
1691481626.560899-CDS-H-paniculata_contig9492:4556..46691691481626.560899-CDS-H-paniculata_contig9492:4556..4669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 4557..4669 +
1622931180.1062622-CDS-H-paniculata_contig9492:5580..56461622931180.1062622-CDS-H-paniculata_contig9492:5580..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 5581..5646 +
1691481626.5721157-CDS-H-paniculata_contig9492:5580..56461691481626.5721157-CDS-H-paniculata_contig9492:5580..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 5581..5646 +
1622931180.1184154-CDS-H-paniculata_contig9492:7516..76731622931180.1184154-CDS-H-paniculata_contig9492:7516..7673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 7517..7673 +
1691481626.5821135-CDS-H-paniculata_contig9492:7516..76731691481626.5821135-CDS-H-paniculata_contig9492:7516..7673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9492 7517..7673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9492.17230.1

>prot_H-paniculata_contig9492.17230.1 ID=prot_H-paniculata_contig9492.17230.1|Name=mRNA_H-paniculata_contig9492.17230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFM
VGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSG
GNQRKKSGRGKQKRPSRQAPPRYDDDYGYDDDGWDNGGGGWGGYDDYERR
*
back to top

mRNA from alignment at H-paniculata_contig9492:2294..8334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9492.17230.1 ID=mRNA_H-paniculata_contig9492.17230.1|Name=mRNA_H-paniculata_contig9492.17230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6041bp|location=Sequence derived from alignment at H-paniculata_contig9492:2294..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAAGAGACAGAGGATCAGGCGGGGGGGGCTATGACCCTTACGATGAT
AGGAAAGCGCCGAAACGCGCGAGAGGATCAGGCGGGGGTGGTTTCGACCT
AACGGGGACCATCACGAGCGGCAATAAAAGTAGGTCCAACTGGGGCCCCG
CTCTAGACGTTATGTTTTCCCTCTCCCTCCGTTCTCCTATTAATAGTGTT
TCGATTCTTCGAGTTTTCGACTTTCGAAAACAATCGCAAGAATTTCGGAA
TTTCGGAATTTCGAAAGTAAAAGTACGATTTGCGGCTGCAATCAGTGCGT
ACATTAATTACGATATTTCAAACGTTTCCGATTTCACAAACCTCATCCCG
CTACAATTGTGTATCGTCCTCGCACTGGAGAAATGGTGAATAACAATATT
AACACGACAGCATTTAGAGCCGCCCTTTCGCATTTTTTTCAATCCTTTTC
TTTCCGTGCTCTCTTACTGTATTGTTGATGTAGCCTCCAGACGTCGTCTG
GAGGTTGTTGACGCCGTTTCAAGTCCGAACCGAGTTTGCACTCATTCTAG
TACAGCATGTTGATCGACCTATCTAACAAGCGCACCGCAACTTCATACTT
TAGTAGTGGTTTTGCCCCATCCCCGTGATGCCGTTAAGCCACACAGTCAG
AGCGATGATTTTGTTAGCTCTCGATAATTCGCCTTCCTATCTTCATCGAA
TGCCGAGAGTGACCATCCAAAAGCGCATTATGGCAAGGCCTGCGTCATGT
TTTTTCATCACCATAATGTAGACCTTTCAGCACCAGTGCGTAAGTGCCCT
GTTGCACCATTATGCGTGCGGCAGAGTGAAGATTCAGCTCCACCCCCCGC
TTGTGCACGAACCCTCCCCTCTTGTGTTTCAGACCAATTGAGGGAGACCC
GACGCAAGAAAATACATGGCGCGGTAGACTTCAGAGCAATATCTTGTGAT
ATATTCCTAATTCTCGGATTGCCCTGCTTTGGTACTGCGCGTCTGGGCCC
TTGCTTCCTGCAGAGTACGGGGTGTATGCTCTAGCGGGATCTGTTCTTCT
GACCATGATGGGGATCTCGCTCATGTTCGAGAGGAACCTCATCCGGTTGG
GCAACGTGAGTTGCGTCATCTGTTTGCCTGATGCACCCTTCTACTCCTGA
CGTACTTGTATAACGGGATATGGGTATCTCCCCCGCCCCGCGCTCAACTC
TGTACGTTGCTTTGACAAGAGACAATCCATGATCCGTATTGTTGTTCTGT
CTCTTGGAGCTGGTATCTTTTTGGTTGGCGGAAACAATCGTTGTTGTTCT
GTTACTCGTGGATTTCCCTTTCCCTTCTACTTTCGCTACGCTTGAATAAT
ACTCTGATCCAGCGCTGCCTCTCTGCCTTCGTCTTCGCGTGTAATGTTTT
GCGATCGACCTTCGCAGCTGGGATTCGTTGCCGGGATGGCTCTCTTCATC
GGACCCAGTAATGTGATACGATACTTCACTCAGGTAAAATTTATGCCGTT
GTTGGCATGCACGACGACGGGCAGGACCTTCGCACTTTCGATTACAATAT
GAAAATCGAGAGGGGAAAGACGGGGGGAGGTGGTGCGCGCGACGAAGATG
TATACAGTCAGAGTTTATTTTCAAATCCACGAAATGGGTACGCACGATAA
AACAGGAGTAATAATAGGATGGTGGATGGTGGTAGAGTGAAAAAATGGGA
AAGGCAGTGTCTGCGACTCTTTTTTGTGTGGAAAAATTCCATCCAAAAAA
CTTTGATCTCATCACAAATTACATGCTGCAAGTAAAGGGTCTTGTCTTCC
TCATGTTTCGCACGCCTTATTTAGCCATTGAACGATTTCGATGCCACTGT
TTACAAGAGGCGGAGTGGTGTGGAGGATGGAGGGACTGAGCAAGACGCTA
AATGTCGTTTCTGTCACGGGTTAAATAACTTTTCATGTGCCATCACGTAT
CGCAGTCCTCCTAGTACATTTGATTCAAACTGTGGTTGGCTGTCTATCCC
AACCCACATCACTACCACAGACATCTAACCCACCTCTGACAGCCTTGTGG
GGAGAGATCTGGCATGCAGACATACCACTATAGTAAATGATCTTCCGGAG
CGATCCACATAAACGGTGTCGAACCAACGATGGAGTCGAAACATCAGCGT
ACCTCATTTTCCTATCGGCCATTTTCCGGTGCTCTTTTGCGAATTCTGTT
TCCGCCTGTAGCTGCTTGTTTTCTTCTCCGGACTGACTGCCCCCTCGGTT
CCCCGTTTCGCAGGCGTCTAAGCTAAGGGGTACGATTATTTTCATGGTCG
GCTTCTTTTTTGTGTTCACCGGACATCCCATTGTAGGCCTCGCCGTCGAA
GTCTTCGGCTTCCTCAATCTGTTCGGGTGAGCTACCAAAATAGCATGCCA
CCAGAAAAAATGCGATGAAGATGGCTTCAAAAGATTGTCGAGCGCAATTG
TGTTCGACGGTTTCACGTCCTGACCTCTCCGTTGTGTCCTCTGCTACGGT
TGTTGCTTCGGACAAAGAAATTATGTATTTCCTTCACTCGTATTACGTGC
CGTGATAACGTCATCTCGGCATGACCACTCTCTTACAACAAATGCATTTC
GTTGTTATTCCTATGACGTAGTCATTTTTTTCTTTTATACAGTAGGACCT
ACATTTCTGTTTTTTCGAGAAGACAACGTGAAGCCGTTGCCACCTAATTT
TTTTTCTGTGCTAGAAAGAGTTATTTTCAAGAAAAAAAAAAAAACGCGAC
ATCGTGCCATTTGGTCATTGGTGAACCCCTCGCCGGCGATCGATCTTGTC
GTGTGCCTGTCGATGAGTCCGTGGATCTGGCGATTGTTGAAGGAGGCGAG
GTCACGAAGAAACGTAGGCACCTGTTGACTGGATTCCCTCATAAGCAGAA
ACTTTTGCTAAACTCAGTCCGCATCAAGCTAGAAACGCACTTCGTACCGT
TCGGTGTCATTTGTGCACAATAGTCCGCCCTCCCCCCCTCGGCTACTGTT
ACTCAAAGCAGCCGCCGTTACACTTCTGCATATAGCCATGCCTCCATTGC
TTTTCTCCTCTTTTCACGCAGGCATCGCCCCGGGGAATCAGCCATTTTAT
CCCCAATAATTGACGTAAATTATCACCAACCAATTTTGCAGCATGTTTCA
CACTGTCTTCGTCATGTGTGGTGACGAGATATCAATGAGTTTTTGTAGCC
ATTTTTTCCCGTCCTGGCTGATTCAGCCCTTGACCCGAAACTCCATTACC
CCTGCGTTGCAATTTTTCGGCTTATTCGGAGTACCAGGAACATGCTCCCC
ATGCTATGGGCGATGGCCAGCAACATGCCCTTCATCAAGGACATCATTGA
CAGGCAAGTGCAGCGCTCAGAAAAATATGCTTGTCTCTTGAGGTTTACTC
GTTATTGTTACCCTGAGTGATAAATCACCGTTGGACCTCGGTATTATTGA
AGACCAAGGTGGTCTTCAGTGACACTGAACCTTTGTCGTTGCCAATATTT
TGTCGAGATATATCTGTTATTTGTTAGGCGCGCTCTCTCGACAGGTCGGT
GCAGGGTGTTCCCTCTCCAGAAAACCTAGGTTCCAAGAAGTTGAAGTTAT
CATCTGAGTGTTACACTACCTGATATATATATATATATGCATATATAACC
TGGAGTATGACAAGTGCGTTATATGTACATAGTTAATAGTGTTCACTGCT
CCGAAATGAACGTTCGAGTATTTTCTCTTGTGTTCGCAGAAAACCGTGTT
TATGTTGAGCGCGAAAACGGTGATACTATTGCGTATAACTTCGGATTCAA
GATATCACAATTGCAAGGAAACCTGCGCGTTCTATGTAAGTTGCTTTCGT
TATCTTCGTCTTTCTACACGTCTATCAAATCCGCTTGCCGTGGCTCATGC
CTATGTAGTGTCTGTAACCTGTCACGTACGTCAATAAGTCGTAGGATCAA
TCCTGTGGTTCCTTGGTGTGTGTGTGTGTGTGTTTGTGTGTGTTTTTTTT
GCTTGTGTACGCTTTTGTATTGGTGTCCGGCCATTATATATTACAAGATC
TTCGATGTGGTGTGGACTTGCGTACTGATAGTTGGCTCATGTGGAGACAT
AGCTATTCATCACCTATGGTTGAAATATTCATTACGTTCCATGGCTCCTC
CAGTAAAGATCCCAACCGAGTGGGTGGGGTGGCACGTTAGGGGTTGAGCT
GCTTTGTAAATTGGATAGTGATGGAATGATTCCTCTATAGCGGGGAGAAT
ATGGCAGCGTTTCTTGATATCGTGGAGAGATCCGCGTTTCTGTTGCCGTG
TCGAGTGCCATCCCATCCGCCCATGATTATATACATACATCTCTCTCTAT
AGCCATGATTATGGATGGATTATATAAACCAGGGCTTTTCACATAATCGA
CTGTAAGTCAGACATGACATGACCAACCGCGAACCGATTTGTAAAAATAG
GATACTTCACATAATCCTACCGCGTACTGGTTCCTGTTCTGGTCACATTT
AAGCCTAAAAAAAGAATTCTCCGTCTCGCGAAGAGCGTCAAATATTTGAT
TGTCGACAGAATAGCTCCTTTTTTTTTTTTTTCACGTGACCGAGATTAAA
AACACATGATGAACTTGCCAGATTTTTCACCGGTACAATCGGTTTTGCCG
TAGGGTTTTGTCATACATTTCATTTCTAAATACGATCGGTTCGCGGTCCT
TTTTGTCTGATTCAATCCGGTCCGGTCCGCGGTAGGGCTAGTCAGATATG
TCATTTCTTGAACCGGCTTGCGGTCGCTCCTGTCATGCCGTGTTTCATTT
ACAGCCGGCCATGTAAGCAGCCCTGAGATAAACCTCACCTTAAAACGCAC
TCATTTGTAAAGTACTGTATATGTATACAATAAATAGAAAAGTCGTGGTA
GCGTATCATGTGCATCGATATTTTTTTGCCTATGTGCAAAGTTTTATCAT
GTGCCTCTTTGGACTTTTGGCAACGTACGTGTATTCTATCCGTTAGACAT
GCGAGTGATATTGAGTTGTCCTTCCTGTCAGATGATGTAGTGGCCACGTG
CTATGTGTCCAATTGAGTTGCCCTCTACCCCACCCCACCCGCTGCCTTGC
ATGCACAATATTACATATACATACGTACGTGCTCCTTCTGATAGTATCCC
CGCTCGTTCCTGACTCTGTAGCGGACTGATACGGACTTCGTGTTTTTTGC
CATAACTCAACTTAACTAACCAGCGGAGGGAATCAGCGAAAGAAGTCGGG
ACGAGGCAAGCAAAAGCGACCTTCGCGGCAGGCGCCGCCGCGTTACGATG
ACGACTATGGCTATGACGACGACGGCTGGGACAACGGAGGGGGCGGCTGG
GGGGGGTATGATGACTACGAGCGACGTTGACATGACTGTGGAAAGTAACT
CGGGGGGACAGGCTATTGCTATTAAGTCGGCCCGTCTTTTGTTGTTGATT
TTTTTTTTGTTGTTGTTATCAATGTCGCACGGTATTTGTCGTTCTGTGTG
TTGTTCTTTTTGCTTGACAAGTCGAGTAGTTCGTGATGGAGTTTTTTTTT
TAAAATAGGGGATCGTGGCGACGGCTGTTCACTCTCGTTGTTCCGCCGCA
ATGACCTATGGGCCAATCGAGTGAGGCGTGTGTATTAAAGCAGCATGGTT
TGTCCGGGTTTCAAGACTGAAAATGGTCATGCCTCTTTTTGTGGAAGCAA
GCATTAGGGTAGTCTGGAGCTTGCGGGAGTTTAGATGCTGTCACGTCGAA
AGTGCGATGCGCATCCTTTGTCTGTCTTGCTGTCGTCTCTCTTGGCGACC
TTGCTTTGTTTTGATGGGTACTAAAGTTACACGCGTGAGCGCACACAGTG
TTCGAGTTTAGAAATGGAGTGCTGCGGCAAACATTATCGTGTCATAGAGT
TAATATTATGCCGTAGTTTCGTTCATCGATTGACGGGTTTGTTTGCTCAC
TCTACACGACTGCACGGGATTGTCATTGTCCAGTCTATATTCGCATAGAC
AACATGGGGTGTTCCTCAATCATGGCCCAAGTTGACGGGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9492:2294..8334+

>mRNA_H-paniculata_contig9492.17230.1 ID=mRNA_H-paniculata_contig9492.17230.1|Name=mRNA_H-paniculata_contig9492.17230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig9492:2294..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGGATCTCGCTCATGTTCGAGAGGAACCTCATCCGGTTGGGCAA
CATGATGGGGATCTCGCTCATGTTCGAGAGGAACCTCATCCGGTTGGGCA
ACCTGGGATTCGTTGCCGGGATGGCTCTCTTCATCGGACCCAGTAATGTG
ATACGATACTTCACTCAGCTGGGATTCGTTGCCGGGATGGCTCTCTTCAT
CGGACCCAGTAATGTGATACGATACTTCACTCAGGCGTCTAAGCTAAGGG
GTACGATTATTTTCATGGTCGGCTTCTTTTTTGTGTTCACCGGACATCCC
ATTGTAGGCCTCGCCGTCGAAGTCTTCGGCTTCCTCAATCTGTTCGGGCG
TCTAAGCTAAGGGGTACGATTATTTTCATGGTCGGCTTCTTTTTTGTGTT
CACCGGACATCCCATTGTAGGCCTCGCCGTCGAAGTCTTCGGCTTCCTCA
ATCTGTTCGGGAACATGCTCCCCATGCTATGGGCGATGGCCAGCAACATG
CCCTTCATCAAGGACATCATTGACAGGAACATGCTCCCCATGCTATGGGC
GATGGCCAGCAACATGCCCTTCATCAAGGACATCATTGACAGCGGAGGGA
ATCAGCGAAAGAAGTCGGGACGAGGCAAGCAAAAGCGACCTTCGCGGCAG
GCGCCGCCGCGTTACGATGACGACTATGGCTATGACGACGACGGCTGGGA
CAACGGAGGGGGCGGCTGGGGGGGGTATGATGACTACGAGCGACGTTGAC
GGAGGGAATCAGCGAAAGAAGTCGGGACGAGGCAAGCAAAAGCGACCTTC
GCGGCAGGCGCCGCCGCGTTACGATGACGACTATGGCTATGACGACGACG
GCTGGGACAACGGAGGGGGCGGCTGGGGGGGGTATGATGACTACGAGCGA
CGTTGA
back to top