mRNA_H-paniculata_contig949.17227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig949.17227.1
Unique NamemRNA_H-paniculata_contig949.17227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5K836_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K836_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.590e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  550 RYS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            +YS  + ++       DEVPKHLH ++   +CT+K+LTV R RRFARRTRD+CRAY ++
Sbjct:   53 KYSWGLSKQKFRRKINDEVPKHLHANIEKSLCTDKYLTVGRVRRFARRTRDHCRAYRDI 111
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BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KM16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM16_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.430e-10
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            YS    ++       DEVPKHLH ++   +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct:   30 YSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 87
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BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.270e-9
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLELQKG 735
            DEVPKHLH ++   MC EK LT+ R RRFARRTRDYCRAY E+Q G
Sbjct:  305 DEVPKHLHANIEKSMCREKHLTIGRVRRFARRTRDYCRAYREIQLG 350
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.310e-9
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            DEVPKHLH ++   +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct:  131 DEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 173
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.790e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            YS    ++       DEVPKHLH ++   +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct:  481 YSWGFSKQKFRRRINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 538
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KLA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.820e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            DEVPKHLH ++   +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct:  292 DEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 334
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.870e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            YS    ++       DEVPKHLH ++   +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct:  549 YSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 606
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.080e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            YS    ++       DEVPKHLH ++   +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct:  895 YSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 952
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.570e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
            YS    ++       DEVPKHLH ++   +C  K+LT+ R RRFARRTRDYCRAY E+
Sbjct:  286 YSWGFSKQKFRRKINDEVPKHLHDNIEESLCIHKYLTIGRVRRFARRTRDYCRAYREI 343
[Close]
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.820e-8
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLELQKG 735
            DEVPKHLH ++   MC EK L + R RRFARRTRDYCRAY E Q G
Sbjct:  955 DEVPKHLHANIEKSMCREKHLMIGRVRRFARRTRDYCRAYRETQLG 1000
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K836_9PHAE6.590e-1050.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM16_9PHAE7.430e-1051.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K769_9PHAE1.270e-969.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU7_9PHAE5.310e-965.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB9_9PHAE1.790e-851.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA1_9PHAE1.820e-865.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL0_9PHAE1.870e-851.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE2.080e-851.72Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH4_9PHAE2.570e-851.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE2.820e-867.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig949contigH-paniculata_contig949:8817..9553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size737
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.6738853-UTR-H-paniculata_contig949:8816..91271622931179.6738853-UTR-H-paniculata_contig949:8816..9127Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig949 8817..9127 +
1691481626.3765156-UTR-H-paniculata_contig949:8816..91271691481626.3765156-UTR-H-paniculata_contig949:8816..9127Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig949 8817..9127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.6936092-CDS-H-paniculata_contig949:9127..95531622931179.6936092-CDS-H-paniculata_contig949:9127..9553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig949 9128..9553 +
1691481626.3876467-CDS-H-paniculata_contig949:9127..95531691481626.3876467-CDS-H-paniculata_contig949:9127..9553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig949 9128..9553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig949.17227.1prot_H-paniculata_contig949.17227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig949 9128..9553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig949.17227.1

>prot_H-paniculata_contig949.17227.1 ID=prot_H-paniculata_contig949.17227.1|Name=mRNA_H-paniculata_contig949.17227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MLLCIAVCAAVCTYLQCCYYDTNAVGACLDCCTPRPPCCFLYPTGKSHHS
LHRLGAPQERAFKKQRREGANVTRADWMASILLNYRERSGASRVRRRGAK
APAPGHGRLDVHGKIPDSSAGAPLRAPHARLLPGVLGASEG*
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mRNA from alignment at H-paniculata_contig949:8817..9553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig949.17227.1 ID=mRNA_H-paniculata_contig949.17227.1|Name=mRNA_H-paniculata_contig949.17227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig949:8817..9553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGCAATCGAAGCTTTTCGACACCCAGGAGGAGGCAGAGGCAACCAA
AGAGTGGTGGTGGACGAGTTGGGAGCAGGGGTACAAGGGAACGCAGGTTG
ACCCGTCCCCTCCTTCAGATCAACAGCGCAGCTCGGCCTCCGCGTCAATA
GCAGGTTCCGCAGTTGGAAGGTTACCCGAAGGCGAGTTCCATCAGGTTCT
GCCGCTGTTGTCTTATTGTTTTTGTGGCTGTCTGCTTTCATTTGTACTGT
TGTTTGTACTGTTGCTTGTACTTCTGTCTGTATTGTGGTCTGTTTGAACT
ATTGCTTTGTAATGTTGCTTTGTATTGCTGTCTGTGCTGCTGTATGCACG
TACTTGCAGTGCTGTTACTACGACACGAATGCTGTTGGTGCATGTCTTGA
CTGCTGTACGCCCCGTCCCCCCTGTTGCTTCCTTTATCCAACAGGGAAGT
CTCACCACAGCTTGCATCGACTGGGCGCCCCACAGGAGAGGGCGTTCAAG
AAACAGCGCAGGGAGGGAGCTAATGTAACACGTGCGGATTGGATGGCGTC
GATACTCCTGAACTATCGAGAGAGAAGCGGTGCCTCACGCGTGCGTAGAC
GAGGTGCCAAAGCACCTGCACCAGGACATGGTCGCCTTGATGTGCACGGA
AAAATTCCTGACAGTTCAGCGGGCGCGCCGCTTCGCGCGCCGCACGCGAG
ACTACTGCCGGGCGTACTTGGAGCTTCAGAAGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig949:8817..9553+

>mRNA_H-paniculata_contig949.17227.1 ID=mRNA_H-paniculata_contig949.17227.1|Name=mRNA_H-paniculata_contig949.17227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig949:8817..9553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTTTGTATTGCTGTCTGTGCTGCTGTATGCACGTACTTGCAGTG
CTGTTACTACGACACGAATGCTGTTGGTGCATGTCTTGACTGCTGTACGC
CCCGTCCCCCCTGTTGCTTCCTTTATCCAACAGGGAAGTCTCACCACAGC
TTGCATCGACTGGGCGCCCCACAGGAGAGGGCGTTCAAGAAACAGCGCAG
GGAGGGAGCTAATGTAACACGTGCGGATTGGATGGCGTCGATACTCCTGA
ACTATCGAGAGAGAAGCGGTGCCTCACGCGTGCGTAGACGAGGTGCCAAA
GCACCTGCACCAGGACATGGTCGCCTTGATGTGCACGGAAAAATTCCTGA
CAGTTCAGCGGGCGCGCCGCTTCGCGCGCCGCACGCGAGACTACTGCCGG
GCGTACTTGGAGCTTCAGAAGGGTGAATGTTGCTTTGTATTGCTGTCTGT
GCTGCTGTATGCACGTACTTGCAGTGCTGTTACTACGACACGAATGCTGT
TGGTGCATGTCTTGACTGCTGTACGCCCCGTCCCCCCTGTTGCTTCCTTT
ATCCAACAGGGAAGTCTCACCACAGCTTGCATCGACTGGGCGCCCCACAG
GAGAGGGCGTTCAAGAAACAGCGCAGGGAGGGAGCTAATGTAACACGTGC
GGATTGGATGGCGTCGATACTCCTGAACTATCGAGAGAGAAGCGGTGCCT
CACGCGTGCGTAGACGAGGTGCCAAAGCACCTGCACCAGGACATGGTCGC
CTTGATGTGCACGGAAAAATTCCTGACAGTTCAGCGGGCGCGCCGCTTCG
CGCGCCGCACGCGAGACTACTGCCGGGCGTACTTGGAGCTTCAGAAGGGT
GA
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