mRNA_H-paniculata_contig9483.17226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9483.17226.1
Unique NamemRNA_H-paniculata_contig9483.17226.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 2.130e-154
Identity = 215/328 (65.55%), Postives = 256/328 (78.05%), Query Frame = 2
Query:    2 LRRIDITGLGPSEVRSLVDFSQPVILSGVLPGRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKESL-PARFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENL 982
            L RID+TGL  ++V  LVDFS+P IL+GVL    CE WC+ L++DL +E   FQIR N   RSEVF  SL DFV  LQ+ESTH+ SWYLLDEHLLD P+ARP+L  +L   Q LLG DEF+ FPP+VRPQ  C I+GGVGARSFLHSDPMEWMGWN+LLEG+KLWTFLPPL +LD+ LGTYRL PNAFGSHN+SAGWQSNVDLY++   T       SWP +  GQEV+ HA+SGVQE GE+V+IPPR+WHQVYHLEPS+AVASQYMD RVRDRVFRH+L+WCG   + L  +RFD L   +Q +EVLK +LVAR+G  KGL+AF+ L
Sbjct:   84 LPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDLGEETCAFQIRDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATA------SWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGL 405          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.420e-54
Identity = 127/376 (33.78%), Postives = 180/376 (47.87%), Query Frame = 2
Query:    8 RIDITGLGPSEVRSLVDFSQPVILSGVLPG--------RKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAF--GSHNISAGWQSNVDLYRN------------------APPTV--DHRNGV-------SWPMSSPGQEVLAHAISG----------VQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKESLPARFDFLPPAE----QAREVLKTSLVARYGEPKGLKAFENL 982
            + D+    P + RS VD  +  ++   L G           E W  A  E  A E V    + +    +     SL  FV  L  +S H +S+YLLDE LL    + P LA  L   +   G D F  FP  ++P++ C+++GG G+RS LH+DPMEW GWN LLEG KLWTFLPP    +  LG+ R+    +  G +NISAGWQS+VDLY                      P++  D+  G+         P       VL   + G          +Q EG++V IPP +WHQ YHLEPS+AVA QY+  +   +V  H+  WC        + F  +   E      +E+L  +L A++G+ KG + F +L
Sbjct:   76 QFDVVTGRPEQFRSEVDGRRVGVIKNALWGDMGAARSAEAMEAWTAAFFEAFAQERVTCHTKDSTTGETTALDLSLSHFVD-LAFKSNHQHSYYLLDESLLS---SAPSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYMEKIAGKGRSGDWPSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQYLSSQNFQKVAAHVCKWCDASIGDAGSHFQQVADTEGYETAIQELLLLALRAQHGQAKGDELFSSL 447          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A8J5Y022_DIALT (JmjC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y022_DIALT)

HSP 1 Score: 181 bits (460), Expect = 1.500e-50
Identity = 116/293 (39.59%), Postives = 153/293 (52.22%), Query Frame = 2
Query:   68 PVILSGVLP-GRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQE--ESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFE-HFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN--ISAGWQSNVDLYRN----APPT----------------VDHRNGVSWPMSSPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKES 868
            P++L+  L  G   E W + L+E  A   V+ Q+R     RS   RE     + G  E   ++H + W LL +  L   +A P L   L     L   D FE HFPP +RP   CVI+GG GARS LH+DP EW+G N+ LEG+KLW FLPP PEL A L  YRL   A+GS    +SAGWQS+ DLY      AP                   D R G+  P +    +     +  VQ  GE+++IPP +WHQ Y+ EPS   A QY+D   R  VF+H+L+W  TG+ +
Sbjct:    5 PLLLTHALADGSALETWADRLVEHAAAARVEVQVRRG---RSTELREVT---LSGACELAYASHHSEWSLLFDERLVSARA-PQLERELALRPGLFEPDWFEAHFPPELRPSRTCVIVGGEGARSTLHADPFEWVGTNVCLEGRKLWRFLPPEPELSAQLRGYRLPSIAWGSQGGALSAGWQSDFDLYATRRAGAPGARALRDSARADEQLRAMADVRTGLLRPDARLPADAARRLVGCVQRAGELLLIPPGWWHQSYYPEPSFCAAGQYLDSFCRASVFQHVLDWTRTGRRA 290          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA)

HSP 1 Score: 173 bits (439), Expect = 8.320e-47
Identity = 112/339 (33.04%), Postives = 172/339 (50.74%), Query Frame = 2
Query:  107 ELWCEALMEDLADEYVDFQIRSNAD-CRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLG-VDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQS-NVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHAISGVQ----EEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNW----------------------------------------CGTGKESLPARFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENL 982
            + + +   E+  D  ++ Q++ N+   +  ++  +L   V G+ ++STH+ +WYLL+E LL+  + R  +    R   +L G +D F+ FP  +RP++HC+I+GG GARSFLH DP EW G N LLEG+K+WTF PP     A LG  R+ P A+    +SAGW+S + DLY   P   +    +  P      EVLA  + GVQ    EEGE+V+IPP + HQVYHL+P +++A Q  +      V  H+L W                                        C    E +  R   +   E+A   L+ +++ R+G  +GL+A+E L
Sbjct:   74 DTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRK-IKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPC---SADLGLKRVLPEAWEGE-VSAGWKSTDFDLYYKVPEIFEGAVTLDLP------EVLAD-VEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKA---LRQAMILRHGPERGLQAYERL 397          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.990e-40
Identity = 86/177 (48.59%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  476 LEGQKLWTFLPPLPELDAPLGTYRLTPNAFG-SHNISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPG------QEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQ-YMDERVRDRVFRHILNWCGTGKESLPARFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENL 982
            +EG+KLWTFLPP PE    L  YRL PNA+G S+N+SAGWQS VDLYR  P +    +G    M S        ++V A     VQ EGE V+IPPR+WHQV HL PSIAVASQ Y   R R R+F+HI +WCG G  + P      PP +Q   VL+  L A++G   G + F+ L
Sbjct:    1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYR--PFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKEL 173          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A8J2SEA1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.190e-37
Identity = 101/279 (36.20%), Postives = 135/279 (48.39%), Query Frame = 2
Query:   41 VRSLVDFSQPVILSGVLPGRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEF-EHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQSNVDLY-------RNAPPTVDHRNGVSWPMS----SPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHIL 841
            +R+ +D  QP + +G L    C+ W   LME   D  V  QI  +       F   L +F       STH+   +L DE LL+        A I        G + + + FP   RP + CV+  G GARS LH DP +W G +L LEG K+W FL  L   DA L  Y+L   AFG    SAG QS++DLY        +A    D R+ V         +P  +V     + +Q  G+VVI+PP+ WHQ Y LEPS AVASQ+   R    VF H++
Sbjct:   32 IRAALDSGQPFVAAGALSPEACDAWTGNLMEGFGDAIVTQQIAGDP------FDAPLAEFFYDALA-STHETPHFLFDEALLE---GNLRAAAIAPQRAIFEGEESWLDAFPAERRPADACVVCAGAGARSPLHRDPYDWTGTSLCLEGSKVWRFL--LDVDDADLEAYKLPSEAFGDD--SAGTQSDIDLYCVQEGDWPDAADFEDDRDLVKAKAGPENFTPSTQVPGRFCTALQFAGDVVIVPPKSWHQTYALEPSCAVASQFCGRRDAPTVFEHMI 296          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO)

HSP 1 Score: 141 bits (356), Expect = 1.490e-35
Identity = 84/260 (32.31%), Postives = 130/260 (50.00%), Query Frame = 2
Query:  116 CEALMEDLADEYVDFQIRSNADCR--SEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN-------ISAGWQSNVDLYRN-----APPTVDHRNGVSWPMSS-PGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWC 850
            C+ L+E+   + V+++  ++ +    +++  + L DFV      S H++   L+DE+++        L   L +    L  D F  FP  +RP   C+++GG GARS LH DP+ W GWN LL+G+KLW F P +P+       +R     FG          I +GW+S+VDL+ N     A P  D    +S  +   P  +  +  +  VQE GE +I P  +WHQ YHL P+   A Q ++     RV  HI+ WC
Sbjct:   39 CKTLLEEAGCQEVEYKRATHGELNLATDLLSKVLCDFV----PNSYHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---NAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLFANRTHPAAEPLCDSFGSLSPDLGQFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC 288          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN)

HSP 1 Score: 140 bits (352), Expect = 3.470e-35
Identity = 98/268 (36.57%), Postives = 128/268 (47.76%), Query Frame = 2
Query:   41 VRSLVDFSQPVILSGVLPGRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDE---FEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQSNVDLYRNA-------PPTVDHRNGVSWPMSSPGQEV-------LAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVAS 793
            + + +D  +P I +  L  R CE W +ALM  L D  V  Q R       E     LG F       S+H    +L DE LLD      DL       Q  +   E   F+HFP + RP++ CV+  G GARS LH DP +W G +L +EG K+W F   L   DA LG Y L   AFG    SAG QS+ DLY          P   D    ++   S+  +          A  ++ +Q  G+VV++PPR WHQ Y LEPS+AVAS
Sbjct:   42 IAAALDAGEPFIAAEALSARDCEAWTDALMMRLGDAPVRRQRRG------EALEMPLGAFFEDALT-SSHALPSFLFDEFLLD---GDDDLRGAAVGPQRAIFGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFA--LDVADADLGAYELASEAFGGD--SAGTQSDADLYARRVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A830HZM1_9CHLO (JmjC domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZM1_9CHLO)

HSP 1 Score: 140 bits (354), Expect = 3.890e-35
Identity = 93/259 (35.91%), Postives = 134/259 (51.74%), Query Frame = 2
Query:  113 WCEALMEDLADEYVDFQIRSNADCRSEV--FRESLGDFVGGLQEESTHDNSWYLLDEHLL-DLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLP----PLPELDAPLGTYRLTPNAFGSHN--ISAGWQSNVDLY--RNAPPT-VDHRNGVSWPMSSPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCG 853
            W   L+    + +V+  +R N    S V  F E+LG+        S HD+S  +++E LL + P    D A   R  + +   ++ +  PP++RP   CV+ GG G+RS LH+D   W+GWN L+EG+K WTF+P    P  E+       R+ P A+   N  I AGWQ+ VD Y  R+A  T    R G      +  + +  H I+  Q EGE+VIIPP  +HQVYH   ++A+A QY D      V RH+  W G
Sbjct:   53 WLSDLVASAENTHVEVLLRENNHTSSFVAPFMEALGEIA----HASDHDSSVLIVEEDLLANSPAHVQDAA---RLPKEICAENKLDQLPPSLRPGT-CVLFGGAGSRSSLHADAFGWVGWNYLVEGEKTWTFIPHDAFPADEV-----CVRVPPAAWAGDNTSIGAGWQTAVDAYAERSADGTSFTARGGTQEHARAVEEAIQNHGITVHQSEGELVIIPPECFHQVYHHTATVAIAGQYADNTNWPIVCRHVGRWVG 298          
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO)

HSP 1 Score: 144 bits (364), Expect = 9.050e-35
Identity = 92/294 (31.29%), Postives = 136/294 (46.26%), Query Frame = 2
Query:   20 TGLGPSEVRSLVDFSQPVILSGVLPGRKCE----LWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN-------ISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHA------ISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWC 850
            TGL P +     DF+       VLP    E      C+ L+E+   + V+++  +  +    +  +SL   +      S H++   L+DE+++        L   L +    L  D F  FP  +RP + C+++GG GARS LH DP+ W GWN LL+G+KLW F P +P+       +R     FG          I +GW+S+VDL+ N   T       S+   SP      H       +  VQE GE +I P  +WHQ YHL P+   A Q ++     RV  HI+ WC
Sbjct:    8 TGLDPED-----DFTSAADCLLVLPNSFQEASSNFCCKTLLEEAGCQEVEYKRAAQGELS--LATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQI0_ECTSI2.130e-15465.55JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2R9P6_9STRA2.420e-5433.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5Y022_DIALT1.500e-5039.59JmjC domain-containing protein n=2 Tax=Diacronema ... [more]
W7TWL4_9STRA8.320e-4733.04F-box protein n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A835YWS3_9STRA2.990e-4048.59JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8J2SEA1_9STRA5.190e-3736.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A812KFH2_9DINO1.490e-3532.31PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
F0YQV8_AURAN3.470e-3536.57Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
A0A830HZM1_9CHLO3.890e-3535.91JmjC domain-containing protein n=2 Tax=Pycnococcus... [more]
A0A812XB14_9DINO9.050e-3531.29PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9483contigH-paniculata_contig9483:4204..6225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2.1e-109
Seed eggNOG ortholog2880.D8LQI0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZ69@1,2S8PH@2759
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-10_005720.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1120
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9483.17226.1prot_H-paniculata_contig9483.17226.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9483 4336..6098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.4997554-UTR-H-paniculata_contig9483:4203..43351622931179.4997554-UTR-H-paniculata_contig9483:4203..4335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9483 4204..4335 -
1691481626.3030465-UTR-H-paniculata_contig9483:4203..43351691481626.3030465-UTR-H-paniculata_contig9483:4203..4335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9483 4204..4335 -
1622931179.6161246-UTR-H-paniculata_contig9483:6098..62251622931179.6161246-UTR-H-paniculata_contig9483:6098..6225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9483 6099..6225 -
1691481626.3658712-UTR-H-paniculata_contig9483:6098..62251691481626.3658712-UTR-H-paniculata_contig9483:6098..6225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9483 6099..6225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.5388656-CDS-H-paniculata_contig9483:4335..45661622931179.5388656-CDS-H-paniculata_contig9483:4335..4566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 4336..4566 -
1691481626.3160164-CDS-H-paniculata_contig9483:4335..45661691481626.3160164-CDS-H-paniculata_contig9483:4335..4566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 4336..4566 -
1622931179.5582411-CDS-H-paniculata_contig9483:4744..50601622931179.5582411-CDS-H-paniculata_contig9483:4744..5060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 4745..5060 -
1691481626.329645-CDS-H-paniculata_contig9483:4744..50601691481626.329645-CDS-H-paniculata_contig9483:4744..5060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 4745..5060 -
1622931179.5751095-CDS-H-paniculata_contig9483:5515..56951622931179.5751095-CDS-H-paniculata_contig9483:5515..5695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 5516..5695 -
1691481626.345311-CDS-H-paniculata_contig9483:5515..56951691481626.345311-CDS-H-paniculata_contig9483:5515..5695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 5516..5695 -
1622931179.5972235-CDS-H-paniculata_contig9483:5964..60981622931179.5972235-CDS-H-paniculata_contig9483:5964..6098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 5965..6098 -
1691481626.3564222-CDS-H-paniculata_contig9483:5964..60981691481626.3564222-CDS-H-paniculata_contig9483:5964..6098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9483 5965..6098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9483.17226.1

>prot_H-paniculata_contig9483.17226.1 ID=prot_H-paniculata_contig9483.17226.1|Name=mRNA_H-paniculata_contig9483.17226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
MEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDE
HLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGAR
SFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN
ISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHAISGVQEEGEV
VIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKESLPA
RFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENLQ*
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mRNA from alignment at H-paniculata_contig9483:4204..6225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9483.17226.1 ID=mRNA_H-paniculata_contig9483.17226.1|Name=mRNA_H-paniculata_contig9483.17226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig9483:4204..6225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCAGAAGAATAGACATCACCGGGCTCGGACCCTCAGAAGTGCGTAGTC TTGTGGATTTCTCTCAGCCCGTTATCTTATCAGGGGTCCTCCCAGGGCGG AAGTGCGAGCTGTGGTGTGAGGCTCTAATGGAGGATTTGGCCGATGAATA CGTAGATTTTCAAATTAGGAGCAATGCCGATTGTCGAAGCGAGGTCTTTC GTGAGAGCCTTGGCGACTTTGTAGGTGGGCTGCAGGAGGAGAGCACTCAC GACAACAGTTGGTGAGTTAAAACCAACACTTTTAAACAGAGAGAGAGCAC ATATTTGCAAAGCAGGCGGTTCAATGTCGCATCGCGAAGAGTACACTTCA AGATGCCGTTCGGCCCTGCTGACATGTTTTTGTGGTGTCATTCTCATGAG GTGCTCAGGCGTTTCTTTGCTGCGAGCAAATCTGGTAATATAGCCGTGTG GGTAAGATACGTACTGTACACACGTGCCTGCATCTGAAATAACACCTCAC ACAGCGCTTTTTTGTGCGCATCAACCCCAGGTACCTGTTGGACGAGCACT TATTAGACCTACCTAAAGCGAGACCCGATCTGGCCTGGATCCTTCGATCG GTGCAGACTCTGCTTGGAGTGGACGAATTCGAACACTTTCCGCCCGCGGT ACGACCACAAGAGCATTGCGTCATCATTGGGGGTGTTGGAGCACGCTCAT TTCTCCACAGGTAAGAGCTGCACTGCCCCGTGATGCAGTGGTGGGAACAT TGGAGTATTTGCAGATAGCAGACAGCAGTTCACCTGTCGTGGAATCAAAG AACATCTTGTTTTCACCAGCTGTGCCGATTTCTTGTCGTCACAGCAAATA TAAGTTGTTTGTGAAATGCTGAATTCTGTGTGGTACGGATGGGCAGAGAA TCGTGTATTCTACTGTTTTTTCCCGATTGCTCAGGTGCGTATGCACGACG TGTTTCTCGGATCCTTAGTTCGTCGCGACATCGCCTTCAAGCACTCGACT GCAAAGGCCCGAAGGGAGTATCGACCGTTTCGATACGTGGGCATGTACCT CATATTTTCTCGCTTATACAGTCCACCCTGCCCGACTAAGCAAGCCTATA CTGTGCTGCACGTGACTCACGTGATCTTGTCTGCTTCTTTGCCTAAATCT TTTGACGGTGCGCAGTGACCCAATGGAATGGATGGGATGGAATCTGTTGC TGGAAGGACAGAAATTGTGGACGTTTTTACCCCCTTTGCCGGAGCTCGAC GCTCCTCTAGGAACTTATCGTCTCACCCCGAATGCATTCGGTTCCCATAA CATCTCTGCAGGCTGGCAGAGTAACGTCGATCTGTACCGAAATGCGCCGC CGACTGTCGACCACCGAAACGGTGTCTCCTGGCCGATGTCTAGCCCAGGA CAAGAGGTGTTGGCACATGCCATTAGCGGCGTGCAGGAGGAAGGGGAGGT AGTTATCATCCCTCCGCGATACTGGCACCAGGTTGGTCTGGTGTTTGTTC GTTGTTCCGATCGCGCGCTCGTCGTTCATACGATTAATCCAAGATACAAC AAAAACAGCCTTTGGCAGGATGCGTCATGTTGGCAGTGGCCCAAAGCAGT GCTAAACGTAGAGCTCACATATGTTGTTCTTTATCCTAAAACACTTATCC ACACCCCAGGTGTACCACCTAGAACCCTCTATTGCGGTGGCTTCGCAGTA CATGGATGAGCGAGTGAGGGATCGCGTGTTCCGGCATATCCTCAACTGGT GTGGCACAGGGAAGGAGTCACTGCCCGCACGATTCGACTTCTTACCACCG GCGGAGCAAGCACGAGAAGTGTTGAAGACTTCCCTGGTGGCTCGTTATGG TGAACCAAAGGGTTTGAAAGCTTTCGAGAATCTACAGTAGAAGGTGGTGC GCTCCCATCTGGAGGCTTCGGCGGTGGTGTTTTGGGCACCCCACCCTTCG TTTAGTTTAATGAATACCATTATCTTCCTCGTGCTTCTGCCGAAGATCGG GGCCCGCAAATGTATTTGTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig9483:4204..6225-

>mRNA_H-paniculata_contig9483.17226.1 ID=mRNA_H-paniculata_contig9483.17226.1|Name=mRNA_H-paniculata_contig9483.17226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig9483:4204..6225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGATTTGGCCGATGAATACGTAGATTTTCAAATTAGGAGCAATGC
CGATTGTCGAAGCGAGGTCTTTCGTGAGAGCCTTGGCGACTTTGTAGGTG
GGCTGCAGGAGGAGAGCACTCACGACAACAGTTGATGGAGGATTTGGCCG
ATGAATACGTAGATTTTCAAATTAGGAGCAATGCCGATTGTCGAAGCGAG
GTCTTTCGTGAGAGCCTTGGCGACTTTGTAGGTGGGCTGCAGGAGGAGAG
CACTCACGACAACAGTTGGTACCTGTTGGACGAGCACTTATTAGACCTAC
CTAAAGCGAGACCCGATCTGGCCTGGATCCTTCGATCGGTGCAGACTCTG
CTTGGAGTGGACGAATTCGAACACTTTCCGCCCGCGGTACGACCACAAGA
GCATTGCGTCATCATTGGGGGTGTTGGAGCACGCTCATTTCTCCACAGGT
ACCTGTTGGACGAGCACTTATTAGACCTACCTAAAGCGAGACCCGATCTG
GCCTGGATCCTTCGATCGGTGCAGACTCTGCTTGGAGTGGACGAATTCGA
ACACTTTCCGCCCGCGGTACGACCACAAGAGCATTGCGTCATCATTGGGG
GTGTTGGAGCACGCTCATTTCTCCACAGTGACCCAATGGAATGGATGGGA
TGGAATCTGTTGCTGGAAGGACAGAAATTGTGGACGTTTTTACCCCCTTT
GCCGGAGCTCGACGCTCCTCTAGGAACTTATCGTCTCACCCCGAATGCAT
TCGGTTCCCATAACATCTCTGCAGGCTGGCAGAGTAACGTCGATCTGTAC
CGAAATGCGCCGCCGACTGTCGACCACCGAAACGGTGTCTCCTGGCCGAT
GTCTAGCCCAGGACAAGAGGTGTTGGCACATGCCATTAGCGGCGTGCAGG
AGGAAGGGGAGGTAGTTATCATCCCTCCGCGATACTGGCACCAGTGACCC
AATGGAATGGATGGGATGGAATCTGTTGCTGGAAGGACAGAAATTGTGGA
CGTTTTTACCCCCTTTGCCGGAGCTCGACGCTCCTCTAGGAACTTATCGT
CTCACCCCGAATGCATTCGGTTCCCATAACATCTCTGCAGGCTGGCAGAG
TAACGTCGATCTGTACCGAAATGCGCCGCCGACTGTCGACCACCGAAACG
GTGTCTCCTGGCCGATGTCTAGCCCAGGACAAGAGGTGTTGGCACATGCC
ATTAGCGGCGTGCAGGAGGAAGGGGAGGTAGTTATCATCCCTCCGCGATA
CTGGCACCAGGTGTACCACCTAGAACCCTCTATTGCGGTGGCTTCGCAGT
ACATGGATGAGCGAGTGAGGGATCGCGTGTTCCGGCATATCCTCAACTGG
TGTGGCACAGGGAAGGAGTCACTGCCCGCACGATTCGACTTCTTACCACC
GGCGGAGCAAGCACGAGAAGTGTTGAAGACTTCCCTGGTGGCTCGTTATG
GTGAACCAAAGGGTTTGAAAGCTTTCGAGAATCTACAGTAGGTGTACCAC
CTAGAACCCTCTATTGCGGTGGCTTCGCAGTACATGGATGAGCGAGTGAG
GGATCGCGTGTTCCGGCATATCCTCAACTGGTGTGGCACAGGGAAGGAGT
CACTGCCCGCACGATTCGACTTCTTACCACCGGCGGAGCAAGCACGAGAA
GTGTTGAAGACTTCCCTGGTGGCTCGTTATGGTGAACCAAAGGGTTTGAA
AGCTTTCGAGAATCTACAGTAG
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